Wall clock time and date at job start Tue Mar 31 2020 17:31:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 109.52218 * 2 1 4 4 C 1.53192 * 109.49929 * 239.92385 * 2 1 3 5 5 N 1.46926 * 108.77619 * 294.68354 * 4 2 1 6 6 C 1.34775 * 120.63444 * 126.36706 * 5 4 2 7 7 O 1.21276 * 119.99636 * 0.02562 * 6 5 4 8 8 C 1.50697 * 120.00106 * 180.02562 * 6 5 4 9 9 H 1.09007 * 109.46826 * 299.99808 * 8 6 5 10 10 C 1.50696 * 109.47441 * 60.00110 * 8 6 5 11 11 H 1.08001 * 119.99933 * 235.44448 * 10 8 6 12 12 C 1.37877 * 119.99728 * 55.44166 * 10 8 6 13 13 N 1.31512 * 120.00347 * 2.11898 * 12 10 8 14 14 Si 1.86799 * 119.99830 * 182.11435 * 12 10 8 15 15 H 1.48502 * 109.47391 * 0.02562 * 14 12 10 16 16 H 1.48506 * 109.47190 * 119.99967 * 14 12 10 17 17 H 1.48495 * 109.47328 * 240.00238 * 14 12 10 18 18 C 1.50694 * 109.47189 * 180.02562 * 8 6 5 19 19 C 1.38239 * 120.00213 * 226.80532 * 18 8 6 20 20 C 1.38238 * 120.00239 * 179.78341 * 19 18 8 21 21 C 1.38231 * 119.99692 * 0.46729 * 20 19 18 22 22 C 1.38236 * 120.00313 * 359.76855 * 21 20 19 23 23 C 1.38234 * 119.99876 * 0.02562 * 22 21 20 24 24 C 1.46928 * 118.73496 * 306.39412 * 5 4 2 25 25 C 1.53183 * 108.78043 * 53.60737 * 24 5 4 26 26 C 1.53042 * 109.49824 * 120.08438 * 2 1 3 27 27 H 1.08995 * 109.45853 * 178.61265 * 26 2 1 28 28 C 1.50701 * 109.45579 * 298.56819 * 26 2 1 29 29 O 1.20826 * 120.00554 * 359.97438 * 28 26 2 30 30 O 1.34235 * 119.99751 * 179.97438 * 28 26 2 31 31 H 1.09007 * 109.46916 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47413 * 300.07823 * 1 2 3 33 33 H 1.09003 * 109.47057 * 60.08119 * 1 2 3 34 34 H 1.08998 * 109.58685 * 54.46871 * 4 2 1 35 35 H 1.08997 * 109.58812 * 174.75418 * 4 2 1 36 36 H 0.96997 * 119.99997 * 179.97438 * 13 12 10 37 37 H 1.07994 * 119.99469 * 0.02562 * 19 18 8 38 38 H 1.08001 * 119.99679 * 180.25404 * 20 19 18 39 39 H 1.08001 * 120.00169 * 179.78716 * 21 20 19 40 40 H 1.08005 * 120.00243 * 180.02562 * 22 21 20 41 41 H 1.08001 * 119.99594 * 179.97438 * 23 22 21 42 42 H 1.08997 * 109.58692 * 173.39692 * 24 5 4 43 43 H 1.09006 * 109.58313 * 293.81691 * 24 5 4 44 44 H 1.08997 * 109.50186 * 65.31531 * 25 24 5 45 45 H 1.08998 * 109.50426 * 185.38208 * 25 24 5 46 46 H 0.96702 * 116.99970 * 179.97438 * 30 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0274 0.0000 4 6 2.0414 -0.7237 -1.2496 5 7 1.6516 -2.1381 -1.1698 6 6 0.9741 -2.7217 -2.1781 7 8 0.6808 -2.0787 -3.1636 8 6 0.5810 -4.1732 -2.0809 9 1 1.4764 -4.7859 -1.9760 10 6 -0.3083 -4.3737 -0.8809 11 1 -0.0433 -5.1012 -0.1279 12 6 -1.4601 -3.6282 -0.7443 13 7 -1.8044 -2.7721 -1.6813 14 14 -2.5316 -3.8343 0.7719 15 1 -1.9284 -4.8517 1.6699 16 1 -2.6292 -2.5375 1.4891 17 1 -3.8886 -4.2770 0.3626 18 6 -0.1603 -4.5776 -3.3291 19 6 -1.3391 -5.2931 -3.2318 20 6 -2.0214 -5.6601 -4.3767 21 6 -1.5199 -5.3200 -5.6191 22 6 -0.3386 -4.6087 -5.7166 23 6 0.3415 -4.2380 -4.5716 24 6 2.0141 -2.9039 0.0306 25 6 1.5031 -2.1559 1.2658 26 6 2.0408 -0.7232 1.2483 27 1 3.1305 -0.7444 1.2353 28 6 1.5678 0.0058 2.4796 29 8 0.8922 1.0015 2.3701 30 8 1.8972 -0.4511 3.6980 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5150 0.8893 33 1 -0.3633 0.5126 -0.8907 34 1 1.6008 -0.2730 -2.1389 35 1 3.1273 -0.6440 -1.2994 36 1 -2.6149 -2.2480 -1.5853 37 1 -1.7289 -5.5619 -2.2612 38 1 -2.9445 -6.2156 -4.3004 39 1 -2.0511 -5.6097 -6.5136 40 1 0.0530 -4.3426 -6.6873 41 1 1.2646 -3.6827 -4.6479 42 1 1.5555 -3.8918 -0.0140 43 1 3.0981 -3.0042 0.0865 44 1 0.4133 -2.1356 1.2540 45 1 1.8476 -2.6632 2.1669 46 1 1.5709 0.0502 4.4578 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001603439858.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:31:51 Heat of formation + Delta-G solvation = -97.626778 kcal Electronic energy + Delta-G solvation = -30613.533951 eV Core-core repulsion = 26661.010103 eV Total energy + Delta-G solvation = -3952.523848 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.65643 -39.30285 -38.00470 -36.59337 -35.92586 -33.82588 -32.62502 -31.37508 -30.72699 -29.66624 -27.58148 -26.89643 -25.57919 -23.74097 -22.51444 -21.94973 -21.26952 -20.53874 -19.12971 -17.99717 -17.89029 -17.15007 -16.36032 -15.84288 -15.45586 -15.35141 -14.93527 -14.79972 -14.43139 -13.97873 -13.85971 -13.63013 -13.30613 -13.20788 -12.80676 -12.53035 -12.32706 -12.15771 -12.03600 -11.78766 -11.57428 -11.44314 -11.29651 -11.20489 -11.12208 -10.86181 -10.77318 -10.61375 -10.37008 -10.22817 -10.10007 -10.04946 -9.84975 -9.68417 -9.38127 -8.72208 -8.28756 -7.68743 -7.64179 -7.38644 -6.16400 -4.30323 2.30484 2.55515 2.62260 3.12703 3.14416 3.25616 3.27436 3.96050 4.17650 4.32831 4.77720 4.97592 5.01925 5.08628 5.20130 5.43303 5.52968 5.59938 5.79217 5.86519 5.94955 5.96429 6.02552 6.04739 6.07497 6.18476 6.28122 6.39245 6.44270 6.50910 6.59124 6.61904 6.65086 6.69146 6.75712 6.78896 6.87920 7.12021 7.13961 7.21534 7.52820 7.57398 7.63502 7.66751 7.77085 7.98548 8.16123 8.26062 8.51360 8.73080 9.32738 9.65773 10.83250 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.016399 B = 0.004890 C = 0.004246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1707.005742 B = 5725.102699 C = 6592.306677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.085 4.085 3 H 0.074 0.926 4 C 0.122 3.878 5 N -0.613 5.613 6 C 0.555 3.445 7 O -0.545 6.545 8 C 0.057 3.943 9 H 0.056 0.944 10 C -0.538 4.538 11 H 0.069 0.931 12 C 0.081 3.919 13 N -0.832 5.832 14 Si 0.871 3.129 15 H -0.268 1.268 16 H -0.282 1.282 17 H -0.282 1.282 18 C -0.014 4.014 19 C -0.064 4.064 20 C -0.148 4.148 21 C -0.145 4.145 22 C -0.144 4.144 23 C -0.100 4.100 24 C 0.113 3.887 25 C -0.125 4.125 26 C -0.073 4.073 27 H 0.103 0.897 28 C 0.482 3.518 29 O -0.511 6.511 30 O -0.518 6.518 31 H 0.078 0.922 32 H 0.059 0.941 33 H 0.050 0.950 34 H 0.091 0.909 35 H 0.051 0.949 36 H 0.264 0.736 37 H 0.128 0.872 38 H 0.100 0.900 39 H 0.099 0.901 40 H 0.100 0.900 41 H 0.106 0.894 42 H 0.125 0.875 43 H 0.046 0.954 44 H 0.082 0.918 45 H 0.076 0.924 46 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.916 0.203 5.525 9.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.104 4.104 3 H 0.093 0.907 4 C -0.002 4.002 5 N -0.348 5.348 6 C 0.346 3.654 7 O -0.421 6.421 8 C 0.036 3.964 9 H 0.074 0.926 10 C -0.576 4.576 11 H 0.087 0.913 12 C -0.128 4.128 13 N -0.464 5.464 14 Si 0.698 3.302 15 H -0.193 1.193 16 H -0.208 1.208 17 H -0.208 1.208 18 C -0.015 4.015 19 C -0.082 4.082 20 C -0.166 4.166 21 C -0.163 4.163 22 C -0.163 4.163 23 C -0.118 4.118 24 C -0.011 4.011 25 C -0.163 4.163 26 C -0.092 4.092 27 H 0.121 0.879 28 C 0.324 3.676 29 O -0.399 6.399 30 O -0.330 6.330 31 H 0.097 0.903 32 H 0.078 0.922 33 H 0.069 0.931 34 H 0.109 0.891 35 H 0.069 0.931 36 H 0.075 0.925 37 H 0.145 0.855 38 H 0.119 0.881 39 H 0.117 0.883 40 H 0.118 0.882 41 H 0.124 0.876 42 H 0.143 0.857 43 H 0.064 0.936 44 H 0.100 0.900 45 H 0.095 0.905 46 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges 7.548 0.747 4.516 8.827 hybrid contribution -1.174 0.751 1.522 2.064 sum 6.373 1.498 6.038 8.906 Atomic orbital electron populations 1.22027 0.93451 1.04098 1.01637 1.21345 0.98226 0.98266 0.92580 0.90726 1.21367 0.97715 0.83278 0.97830 1.47832 1.58448 1.09378 1.19110 1.21029 0.73142 0.90772 0.80407 1.90532 1.53346 1.66029 1.32185 1.17905 0.95540 0.89366 0.93582 0.92633 1.20615 1.07124 1.23857 1.05994 0.91257 1.24946 0.97254 0.95028 0.95564 1.70061 1.23504 1.21921 1.30916 0.86860 0.81221 0.78328 0.83825 1.19280 1.20838 1.20780 1.19802 0.94666 0.93502 0.93481 1.21127 0.93689 0.95701 0.97711 1.20985 0.99741 1.02630 0.93246 1.20765 0.97138 1.01727 0.96683 1.20818 0.96700 1.01192 0.97543 1.20970 1.00105 0.98282 0.92487 1.21827 0.97793 0.98363 0.83091 1.21942 1.03015 0.91733 0.99639 1.21158 1.01957 0.97012 0.89044 0.87865 1.23791 0.76478 0.82632 0.84654 1.90664 1.36050 1.26161 1.87050 1.84568 1.73075 1.58370 1.16943 0.90283 0.92186 0.93070 0.89068 0.93060 0.92509 0.85467 0.88142 0.88303 0.88186 0.87561 0.85734 0.93591 0.89963 0.90531 0.73823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.99 8.40 37.16 0.31 -2.67 16 2 C -0.08 -1.35 2.36 -90.50 -0.21 -1.56 16 3 H 0.07 1.11 8.07 -51.93 -0.42 0.69 16 4 C 0.12 2.05 5.83 -3.71 -0.02 2.03 16 5 N -0.61 -11.40 2.41 -172.78 -0.42 -11.82 16 6 C 0.56 12.36 5.40 -10.99 -0.06 12.30 16 7 O -0.54 -13.90 13.36 5.56 0.07 -13.82 16 8 C 0.06 1.25 1.99 -94.08 -0.19 1.07 16 9 H 0.06 1.12 7.94 -51.92 -0.41 0.71 16 10 C -0.54 -11.97 4.84 -34.44 -0.17 -12.13 16 11 H 0.07 1.49 7.51 -52.49 -0.39 1.10 16 12 C 0.08 1.90 4.01 -17.82 -0.07 1.83 16 13 N -0.83 -21.37 10.90 55.43 0.60 -20.77 16 14 Si 0.87 18.94 29.54 -169.99 -5.02 13.92 16 15 H -0.27 -5.65 7.11 56.52 0.40 -5.24 16 16 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 17 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 18 C -0.01 -0.31 4.51 -104.62 -0.47 -0.78 16 19 C -0.06 -1.45 8.20 -39.58 -0.32 -1.77 16 20 C -0.15 -3.03 10.05 -39.58 -0.40 -3.43 16 21 C -0.14 -2.83 10.05 -39.58 -0.40 -3.23 16 22 C -0.14 -2.92 10.05 -39.58 -0.40 -3.32 16 23 C -0.10 -2.21 8.21 -39.58 -0.33 -2.54 16 24 C 0.11 1.77 5.88 -3.71 -0.02 1.75 16 25 C -0.12 -1.87 4.96 -26.62 -0.13 -2.00 16 26 C -0.07 -1.01 2.37 -91.73 -0.22 -1.23 16 27 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 28 C 0.48 6.84 7.34 36.01 0.26 7.10 16 29 O -0.51 -8.69 14.51 -18.75 -0.27 -8.96 16 30 O -0.52 -5.77 13.30 -39.27 -0.52 -6.29 16 31 H 0.08 1.72 5.97 -51.93 -0.31 1.41 16 32 H 0.06 1.17 5.65 -51.93 -0.29 0.87 16 33 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.09 1.76 7.00 -51.93 -0.36 1.39 16 35 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 36 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 37 H 0.13 2.94 6.04 -52.49 -0.32 2.62 16 38 H 0.10 1.82 8.06 -52.49 -0.42 1.40 16 39 H 0.10 1.64 8.06 -52.49 -0.42 1.22 16 40 H 0.10 1.76 8.06 -52.48 -0.42 1.34 16 41 H 0.11 2.33 7.00 -52.49 -0.37 1.97 16 42 H 0.12 2.13 4.38 -51.93 -0.23 1.90 16 43 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.08 1.50 6.33 -51.93 -0.33 1.17 16 45 H 0.08 0.98 8.08 -51.93 -0.42 0.56 16 46 H 0.40 2.79 9.10 45.56 0.41 3.20 16 LS Contribution 357.91 15.07 5.39 5.39 Total: -1.00 -29.61 357.91 -8.52 -38.14 By element: Atomic # 1 Polarization: 18.33 SS G_CDS: -5.53 Total: 12.80 kcal Atomic # 6 Polarization: -5.77 SS G_CDS: -2.83 Total: -8.60 kcal Atomic # 7 Polarization: -32.78 SS G_CDS: 0.19 Total: -32.59 kcal Atomic # 8 Polarization: -28.35 SS G_CDS: -0.72 Total: -29.07 kcal Atomic # 14 Polarization: 18.94 SS G_CDS: -5.02 Total: 13.92 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -29.61 -8.52 -38.14 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001603439858.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.491 kcal (2) G-P(sol) polarization free energy of solvation -29.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds