Wall clock time and date at job start Tue Mar 31 2020 17:18:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.99534 * 2 1 4 4 C 1.54338 * 109.99250 * 238.96087 * 2 1 3 5 5 C 1.55154 * 103.01877 * 218.66599 * 4 2 1 6 6 H 1.09003 * 111.00740 * 277.23426 * 5 4 2 7 7 N 1.46503 * 111.00342 * 153.38018 * 5 4 2 8 8 C 1.36939 * 119.99844 * 161.34862 * 7 5 4 9 9 H 1.07996 * 120.00255 * 0.02562 * 8 7 5 10 10 C 1.38814 * 119.99609 * 180.02562 * 8 7 5 11 11 N 1.31619 * 120.00351 * 0.02562 * 10 8 7 12 12 Si 1.86803 * 119.99809 * 180.02562 * 10 8 7 13 13 H 1.48500 * 109.47238 * 59.99832 * 12 10 8 14 14 H 1.48500 * 109.47242 * 180.02562 * 12 10 8 15 15 H 1.48504 * 109.47091 * 300.00086 * 12 10 8 16 16 C 1.54914 * 101.58454 * 35.30655 * 5 4 2 17 17 N 1.47029 * 109.87871 * 121.09530 * 2 1 3 18 18 C 1.34775 * 125.64796 * 298.39238 * 17 2 1 19 19 O 1.21711 * 119.99895 * 1.52605 * 18 17 2 20 20 C 1.46602 * 119.99886 * 181.52517 * 18 17 2 21 21 C 1.38032 * 126.00783 * 171.93010 * 20 18 17 22 22 C 1.39395 * 107.42749 * 179.77276 * 21 20 18 23 23 C 1.37753 * 107.65405 * 0.36675 * 22 21 20 24 24 C 1.47913 * 125.81765 * 179.89903 * 23 22 21 25 25 N 1.34208 * 126.69957 * 179.71412 * 24 23 22 26 26 N 1.28983 * 107.25204 * 179.73728 * 25 24 23 27 27 N 1.28720 * 108.99243 * 359.97438 * 26 25 24 28 28 H 0.97000 * 125.31698 * 179.97438 * 27 26 25 29 29 N 1.28869 * 109.36543 * 0.02562 * 27 26 25 30 30 N 1.36387 * 108.35812 * 359.63015 * 23 22 21 31 31 H 0.97003 * 125.71338 * 180.25022 * 30 23 22 32 32 H 1.08993 * 109.47542 * 300.35989 * 1 2 3 33 33 H 1.09005 * 109.46900 * 60.36316 * 1 2 3 34 34 H 1.09007 * 109.46890 * 180.35659 * 1 2 3 35 35 H 1.08998 * 110.84800 * 100.20292 * 4 2 1 36 36 H 1.08998 * 110.66904 * 337.04969 * 4 2 1 37 37 H 0.97000 * 119.99799 * 341.35134 * 7 5 4 38 38 H 0.96997 * 119.99898 * 180.02562 * 11 10 8 39 39 H 1.08993 * 110.36749 * 204.15285 * 16 5 4 40 40 H 1.09009 * 110.36177 * 81.82771 * 16 5 4 41 41 H 1.07996 * 126.28617 * 0.02562 * 21 20 18 42 42 H 1.07999 * 126.17290 * 180.22863 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0577 -0.7478 -1.2427 5 6 3.2864 -1.5183 -0.6914 6 1 4.1670 -0.8769 -0.6578 7 7 3.5476 -2.7243 -1.4812 8 6 4.7735 -3.3313 -1.4189 9 1 5.5476 -2.9213 -0.7872 10 6 5.0211 -4.4737 -2.1676 11 7 4.0779 -4.9731 -2.9378 12 14 6.6932 -5.3022 -2.0821 13 1 6.9662 -5.7231 -0.6844 14 1 6.7014 -6.4933 -2.9689 15 1 7.7415 -4.3483 -2.5255 16 6 2.8099 -1.8825 0.7370 17 7 2.0300 -0.7141 1.1840 18 6 1.8073 -0.3620 2.4658 19 8 1.1178 0.6083 2.7193 20 6 2.3956 -1.1479 3.5546 21 6 2.3816 -0.8160 4.8943 22 6 3.0424 -1.8320 5.5830 23 6 3.4570 -2.7635 4.6567 24 6 4.2011 -4.0070 4.9530 25 7 4.6086 -4.9284 4.0663 26 7 5.2237 -5.8495 4.7272 27 7 5.2172 -5.5434 5.9775 28 1 5.6147 -6.0728 6.6865 29 7 4.5993 -4.4243 6.1402 30 7 3.0591 -2.3466 3.4206 31 1 3.2169 -2.8162 2.5866 32 1 -0.3634 0.5194 0.8867 33 1 -0.3633 0.5082 -0.8933 34 1 -0.3633 -1.0277 0.0064 35 1 2.3599 -0.0450 -2.0191 36 1 1.3067 -1.4405 -1.6225 37 1 2.8522 -3.0927 -2.0482 38 1 4.2509 -5.7715 -3.4607 39 1 3.6655 -2.0411 1.3934 40 1 2.1801 -2.7719 0.7115 41 1 1.9366 0.0665 5.3295 42 1 3.2026 -1.8791 6.6500 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001603859118.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:18:40 Heat of formation + Delta-G solvation = 163.489442 kcal Electronic energy + Delta-G solvation = -28249.941759 eV Core-core repulsion = 24269.785919 eV Total energy + Delta-G solvation = -3980.155841 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.150 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -44.59843 -41.44322 -39.54607 -37.40596 -34.50982 -34.29004 -33.56849 -32.24257 -31.48025 -30.92168 -29.16958 -28.46984 -25.77542 -24.86593 -24.71612 -23.88707 -22.56124 -21.10830 -20.60915 -20.05467 -19.86792 -19.25023 -17.47187 -17.31032 -17.29905 -16.53314 -15.93622 -15.14924 -14.85223 -14.57800 -14.26671 -14.06274 -13.80818 -13.73140 -13.32163 -13.20447 -12.95126 -12.77197 -12.70696 -12.45754 -12.20867 -12.18523 -11.75545 -11.54646 -11.31110 -11.20227 -11.10672 -11.04717 -10.81117 -10.70880 -10.40540 -10.11266 -9.94261 -9.80953 -9.17623 -9.08092 -8.57744 -8.13644 -7.17553 -5.90567 -3.22623 0.70114 1.13894 1.93558 1.98221 2.78108 2.88011 3.08627 3.38999 3.41194 3.43861 3.44916 3.61713 4.13732 4.43614 4.58103 4.94305 4.98049 5.05735 5.16530 5.17274 5.25553 5.34436 5.40571 5.43877 5.58422 5.70280 5.72405 5.82424 5.89654 5.99175 6.01786 6.09199 6.18613 6.25330 6.31622 6.36098 6.48274 6.59013 6.71074 6.75310 7.16909 7.57592 7.62003 7.97636 8.20833 8.26629 9.39120 9.90008 10.25040 11.30911 Molecular weight = 331.15amu Principal moments of inertia in cm(-1) A = 0.007079 B = 0.005459 C = 0.003187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3954.383298 B = 5127.922029 C = 8783.253770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.141 3.859 3 H 0.076 0.924 4 C -0.136 4.136 5 C 0.176 3.824 6 H 0.068 0.932 7 N -0.710 5.710 8 C -0.255 4.255 9 H 0.072 0.928 10 C -0.002 4.002 11 N -0.927 5.927 12 Si 0.906 3.094 13 H -0.282 1.282 14 H -0.290 1.290 15 H -0.285 1.285 16 C 0.056 3.944 17 N -0.607 5.607 18 C 0.600 3.400 19 O -0.534 6.534 20 C -0.010 4.010 21 C -0.117 4.117 22 C -0.145 4.145 23 C 0.099 3.901 24 C 0.241 3.759 25 N -0.265 5.265 26 N -0.040 5.040 27 N -0.228 5.228 28 H 0.476 0.524 29 N -0.283 5.283 30 N -0.514 5.514 31 H 0.432 0.568 32 H 0.068 0.932 33 H 0.064 0.936 34 H 0.056 0.944 35 H 0.082 0.918 36 H 0.080 0.920 37 H 0.388 0.612 38 H 0.258 0.742 39 H 0.067 0.933 40 H 0.075 0.925 41 H 0.157 0.843 42 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.354 4.357 16.324 17.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.038 3.962 3 H 0.094 0.906 4 C -0.175 4.175 5 C 0.064 3.936 6 H 0.086 0.914 7 N -0.350 5.350 8 C -0.386 4.386 9 H 0.090 0.910 10 C -0.199 4.199 11 N -0.574 5.574 12 Si 0.736 3.264 13 H -0.208 1.208 14 H -0.216 1.216 15 H -0.211 1.211 16 C -0.071 4.071 17 N -0.341 5.341 18 C 0.389 3.611 19 O -0.411 6.411 20 C -0.127 4.127 21 C -0.143 4.143 22 C -0.173 4.173 23 C -0.021 4.021 24 C -0.038 4.038 25 N -0.139 5.139 26 N -0.036 5.036 27 N -0.074 5.074 28 H 0.331 0.669 29 N -0.136 5.136 30 N -0.117 5.117 31 H 0.280 0.720 32 H 0.087 0.913 33 H 0.083 0.917 34 H 0.075 0.925 35 H 0.101 0.899 36 H 0.098 0.902 37 H 0.223 0.777 38 H 0.068 0.932 39 H 0.085 0.915 40 H 0.094 0.906 41 H 0.174 0.826 42 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -2.223 4.142 16.114 16.786 hybrid contribution 0.950 -1.115 0.084 1.467 sum -1.273 3.027 16.198 16.528 Atomic orbital electron populations 1.22142 0.94814 1.02344 1.02662 1.21551 0.94450 0.96149 0.84088 0.90563 1.23016 0.98880 0.99707 0.95861 1.21242 0.94895 0.89623 0.87882 0.91438 1.42321 1.14347 1.27441 1.50848 1.19162 0.90218 1.06512 1.22681 0.91033 1.24748 0.97900 0.98261 0.99008 1.69641 1.32563 1.24067 1.31113 0.86296 0.83570 0.78912 0.77622 1.20825 1.21556 1.21129 1.23825 0.94206 0.88152 1.00895 1.48569 1.52061 1.28768 1.04677 1.16649 0.80387 0.83736 0.80350 1.90810 1.39382 1.27854 1.83089 1.20600 1.06508 0.89566 0.96055 1.21180 1.02542 1.00497 0.90127 1.21076 1.03356 0.93950 0.98912 1.16953 1.05998 0.92936 0.86169 1.22498 1.00152 0.95942 0.85254 1.76335 1.11796 1.00050 1.25708 1.78976 1.14817 1.19856 0.89906 1.47770 1.36234 1.14494 1.08902 0.66929 1.74936 1.14170 1.00243 1.24208 1.43026 1.41543 1.18175 1.08973 0.72004 0.91332 0.91698 0.92497 0.89943 0.90160 0.77700 0.93184 0.91537 0.90642 0.82586 0.82908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.12 9.11 37.16 0.34 -1.78 16 2 C 0.14 1.99 3.47 -66.94 -0.23 1.76 16 3 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 4 C -0.14 -2.01 6.11 -24.89 -0.15 -2.16 16 5 C 0.18 3.16 3.69 -65.78 -0.24 2.92 16 6 H 0.07 1.24 8.13 -51.93 -0.42 0.82 16 7 N -0.71 -16.18 5.28 -51.35 -0.27 -16.45 16 8 C -0.26 -6.60 9.98 -15.06 -0.15 -6.75 16 9 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 10 C 0.00 -0.05 5.50 -17.43 -0.10 -0.15 16 11 N -0.93 -26.63 13.06 55.49 0.72 -25.91 16 12 Si 0.91 21.69 29.55 -169.99 -5.02 16.67 16 13 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 14 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 15 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 16 C 0.06 0.91 5.13 -2.53 -0.01 0.90 16 17 N -0.61 -9.35 3.06 -164.55 -0.50 -9.85 16 18 C 0.60 9.63 7.61 -12.89 -0.10 9.53 16 19 O -0.53 -9.51 15.87 5.18 0.08 -9.43 16 20 C -0.01 -0.14 6.83 -81.95 -0.56 -0.70 16 21 C -0.12 -1.50 10.61 -39.23 -0.42 -1.91 16 22 C -0.15 -1.72 10.79 -39.33 -0.42 -2.14 16 23 C 0.10 1.36 7.12 -82.06 -0.58 0.77 16 24 C 0.24 3.32 8.21 -156.25 -1.28 2.04 16 25 N -0.27 -4.11 12.54 32.08 0.40 -3.70 16 26 N -0.04 -0.52 13.46 60.35 0.81 0.29 16 27 N -0.23 -2.04 7.90 60.35 0.48 -1.57 16 28 H 0.48 1.73 8.96 -340.34 -3.05 -1.32 16 29 N -0.28 -3.16 12.39 32.10 0.40 -2.77 16 30 N -0.51 -7.40 5.41 -5.81 -0.03 -7.44 16 31 H 0.43 6.51 5.20 -40.82 -0.21 6.30 16 32 H 0.07 0.98 6.83 -51.93 -0.35 0.63 16 33 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 36 H 0.08 1.20 7.70 -51.93 -0.40 0.80 16 37 H 0.39 9.44 7.71 -40.82 -0.31 9.12 16 38 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 39 H 0.07 1.09 5.55 -51.93 -0.29 0.80 16 40 H 0.08 1.30 8.10 -51.92 -0.42 0.88 16 41 H 0.16 1.74 8.06 -52.49 -0.42 1.32 16 42 H 0.15 1.43 8.06 -52.49 -0.42 1.01 16 LS Contribution 357.01 15.07 5.38 5.38 Total: -1.00 -32.07 357.01 -9.01 -41.08 By element: Atomic # 1 Polarization: 18.91 SS G_CDS: -7.55 Total: 11.37 kcal Atomic # 6 Polarization: 6.24 SS G_CDS: -3.91 Total: 2.33 kcal Atomic # 7 Polarization: -69.40 SS G_CDS: 2.01 Total: -67.39 kcal Atomic # 8 Polarization: -9.51 SS G_CDS: 0.08 Total: -9.43 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -32.07 -9.01 -41.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001603859118.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 204.572 kcal (2) G-P(sol) polarization free energy of solvation -32.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 172.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.082 kcal (6) G-S(sol) free energy of system = (1) + (5) 163.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds