Wall clock time and date at job start Tue Mar 31 2020 17:18:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.99534 * 2 1 4 4 C 1.54338 * 109.99250 * 238.96087 * 2 1 3 5 5 C 1.55154 * 103.01877 * 218.66599 * 4 2 1 6 6 H 1.09003 * 111.00740 * 277.23426 * 5 4 2 7 7 N 1.46503 * 111.00342 * 153.38018 * 5 4 2 8 8 C 1.36939 * 119.99844 * 161.34862 * 7 5 4 9 9 H 1.07996 * 120.00255 * 0.02562 * 8 7 5 10 10 C 1.38814 * 119.99609 * 180.02562 * 8 7 5 11 11 N 1.31619 * 120.00351 * 0.02562 * 10 8 7 12 12 Si 1.86803 * 119.99809 * 180.02562 * 10 8 7 13 13 H 1.48500 * 109.47238 * 59.99832 * 12 10 8 14 14 H 1.48500 * 109.47242 * 180.02562 * 12 10 8 15 15 H 1.48504 * 109.47091 * 300.00086 * 12 10 8 16 16 C 1.54914 * 101.58454 * 35.30655 * 5 4 2 17 17 N 1.47029 * 109.87871 * 121.09530 * 2 1 3 18 18 C 1.34775 * 125.64796 * 298.39238 * 17 2 1 19 19 O 1.21711 * 119.99895 * 1.52605 * 18 17 2 20 20 C 1.46602 * 119.99886 * 181.52517 * 18 17 2 21 21 C 1.38032 * 126.00783 * 171.93010 * 20 18 17 22 22 C 1.39395 * 107.42749 * 179.77276 * 21 20 18 23 23 C 1.37753 * 107.65405 * 0.36675 * 22 21 20 24 24 C 1.47913 * 125.81765 * 179.89903 * 23 22 21 25 25 N 1.34208 * 126.69957 * 179.71412 * 24 23 22 26 26 N 1.28983 * 107.25204 * 179.73728 * 25 24 23 27 27 N 1.28720 * 108.99243 * 359.97438 * 26 25 24 28 28 H 0.97000 * 125.31698 * 179.97438 * 27 26 25 29 29 N 1.28869 * 109.36543 * 0.02562 * 27 26 25 30 30 N 1.36387 * 108.35812 * 359.63015 * 23 22 21 31 31 H 0.97003 * 125.71338 * 180.25022 * 30 23 22 32 32 H 1.08993 * 109.47542 * 300.35989 * 1 2 3 33 33 H 1.09005 * 109.46900 * 60.36316 * 1 2 3 34 34 H 1.09007 * 109.46890 * 180.35659 * 1 2 3 35 35 H 1.08998 * 110.84800 * 100.20292 * 4 2 1 36 36 H 1.08998 * 110.66904 * 337.04969 * 4 2 1 37 37 H 0.97000 * 119.99799 * 341.35134 * 7 5 4 38 38 H 0.96997 * 119.99898 * 180.02562 * 11 10 8 39 39 H 1.08993 * 110.36749 * 204.15285 * 16 5 4 40 40 H 1.09009 * 110.36177 * 81.82771 * 16 5 4 41 41 H 1.07996 * 126.28617 * 0.02562 * 21 20 18 42 42 H 1.07999 * 126.17290 * 180.22863 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0577 -0.7478 -1.2427 5 6 3.2864 -1.5183 -0.6914 6 1 4.1670 -0.8769 -0.6578 7 7 3.5476 -2.7243 -1.4812 8 6 4.7735 -3.3313 -1.4189 9 1 5.5476 -2.9213 -0.7872 10 6 5.0211 -4.4737 -2.1676 11 7 4.0779 -4.9731 -2.9378 12 14 6.6932 -5.3022 -2.0821 13 1 6.9662 -5.7231 -0.6844 14 1 6.7014 -6.4933 -2.9689 15 1 7.7415 -4.3483 -2.5255 16 6 2.8099 -1.8825 0.7370 17 7 2.0300 -0.7141 1.1840 18 6 1.8073 -0.3620 2.4658 19 8 1.1178 0.6083 2.7193 20 6 2.3956 -1.1479 3.5546 21 6 2.3816 -0.8160 4.8943 22 6 3.0424 -1.8320 5.5830 23 6 3.4570 -2.7635 4.6567 24 6 4.2011 -4.0070 4.9530 25 7 4.6086 -4.9284 4.0663 26 7 5.2237 -5.8495 4.7272 27 7 5.2172 -5.5434 5.9775 28 1 5.6147 -6.0728 6.6865 29 7 4.5993 -4.4243 6.1402 30 7 3.0591 -2.3466 3.4206 31 1 3.2169 -2.8162 2.5866 32 1 -0.3634 0.5194 0.8867 33 1 -0.3633 0.5082 -0.8933 34 1 -0.3633 -1.0277 0.0064 35 1 2.3599 -0.0450 -2.0191 36 1 1.3067 -1.4405 -1.6225 37 1 2.8522 -3.0927 -2.0482 38 1 4.2509 -5.7715 -3.4607 39 1 3.6655 -2.0411 1.3934 40 1 2.1801 -2.7719 0.7115 41 1 1.9366 0.0665 5.3295 42 1 3.2026 -1.8791 6.6500 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001603859118.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:18:38 Heat of formation + Delta-G solvation = 140.681542 kcal Electronic energy + Delta-G solvation = -28250.930784 eV Core-core repulsion = 24269.785919 eV Total energy + Delta-G solvation = -3981.144865 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.150 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -45.55163 -42.53154 -40.77557 -38.75359 -36.03469 -35.48084 -34.55044 -33.47469 -33.16895 -31.99743 -30.30631 -30.00732 -27.00527 -26.10577 -25.74141 -25.52104 -23.73033 -22.26739 -21.93055 -21.18507 -20.95635 -20.22099 -19.26735 -18.54281 -18.25719 -17.81207 -17.24260 -16.57012 -16.28046 -15.72609 -15.59736 -15.40191 -15.16521 -14.96120 -14.77103 -14.54753 -14.14556 -13.92830 -13.82286 -13.72220 -13.46216 -13.16860 -13.06485 -12.86638 -12.82523 -12.53125 -12.38593 -12.29865 -12.16372 -12.08775 -12.02273 -11.77381 -11.55175 -11.22089 -10.97369 -10.18747 -9.84709 -9.20952 -9.08391 -7.96945 -5.26832 -0.28406 0.11712 0.86702 1.20282 1.47939 1.50346 1.55072 1.72917 1.86483 1.94083 2.24234 2.54699 2.60374 3.14822 3.27993 3.33379 3.68938 3.75612 3.91014 4.02683 4.13218 4.17741 4.21091 4.25238 4.35238 4.41310 4.46906 4.52875 4.70785 4.78873 4.90200 5.01508 5.06158 5.09829 5.22350 5.32052 5.38219 5.51865 5.53781 5.56838 5.76988 6.05190 6.23954 6.35060 6.96718 7.00749 7.32964 8.02204 8.26816 9.25288 Molecular weight = 331.15amu Principal moments of inertia in cm(-1) A = 0.007079 B = 0.005459 C = 0.003187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3954.383298 B = 5127.922029 C = 8783.253770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.139 3.861 3 H 0.085 0.915 4 C -0.123 4.123 5 C 0.169 3.831 6 H 0.066 0.934 7 N -0.719 5.719 8 C -0.246 4.246 9 H 0.076 0.924 10 C -0.060 4.060 11 N -0.962 5.962 12 Si 0.961 3.039 13 H -0.282 1.282 14 H -0.296 1.296 15 H -0.278 1.278 16 C 0.072 3.928 17 N -0.607 5.607 18 C 0.599 3.401 19 O -0.554 6.554 20 C -0.035 4.035 21 C -0.108 4.108 22 C -0.131 4.131 23 C 0.091 3.909 24 C 0.228 3.772 25 N -0.308 5.308 26 N -0.055 5.055 27 N -0.192 5.192 28 H 0.498 0.502 29 N -0.268 5.268 30 N -0.522 5.522 31 H 0.426 0.574 32 H 0.056 0.944 33 H 0.088 0.912 34 H 0.049 0.951 35 H 0.099 0.901 36 H 0.078 0.922 37 H 0.379 0.621 38 H 0.252 0.748 39 H 0.066 0.934 40 H 0.065 0.935 41 H 0.173 0.827 42 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.969 5.138 18.264 19.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.036 3.964 3 H 0.103 0.897 4 C -0.161 4.161 5 C 0.058 3.942 6 H 0.084 0.916 7 N -0.359 5.359 8 C -0.377 4.377 9 H 0.094 0.906 10 C -0.254 4.254 11 N -0.611 5.611 12 Si 0.791 3.209 13 H -0.208 1.208 14 H -0.222 1.222 15 H -0.204 1.204 16 C -0.054 4.054 17 N -0.340 5.340 18 C 0.390 3.610 19 O -0.433 6.433 20 C -0.152 4.152 21 C -0.134 4.134 22 C -0.159 4.159 23 C -0.029 4.029 24 C -0.052 4.052 25 N -0.180 5.180 26 N -0.049 5.049 27 N -0.044 5.044 28 H 0.358 0.642 29 N -0.122 5.122 30 N -0.124 5.124 31 H 0.272 0.728 32 H 0.075 0.925 33 H 0.106 0.894 34 H 0.069 0.931 35 H 0.117 0.883 36 H 0.097 0.903 37 H 0.212 0.788 38 H 0.061 0.939 39 H 0.084 0.916 40 H 0.083 0.917 41 H 0.191 0.809 42 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -1.825 4.952 18.097 18.851 hybrid contribution 0.842 -1.328 -0.345 1.610 sum -0.983 3.624 17.752 18.144 Atomic orbital electron populations 1.22073 0.93766 1.02078 1.03245 1.21671 0.95262 0.96258 0.83158 0.89662 1.22934 0.97159 0.99550 0.96504 1.21404 0.96342 0.88204 0.88277 0.91602 1.42397 1.13211 1.28716 1.51536 1.19490 0.91199 1.05932 1.21088 0.90649 1.25407 1.00732 0.99474 0.99770 1.69771 1.34157 1.24559 1.32645 0.85405 0.80515 0.77827 0.77201 1.20799 1.22200 1.20384 1.23429 0.94116 0.88151 0.99727 1.48565 1.51891 1.28385 1.05110 1.16827 0.80040 0.83573 0.80583 1.90791 1.40383 1.28794 1.83347 1.20588 1.08018 0.90091 0.96457 1.21477 1.01630 1.00956 0.89341 1.21392 1.01924 0.92644 0.99927 1.17265 1.06080 0.93362 0.86205 1.22588 1.00842 0.96085 0.85669 1.76309 1.13326 1.01170 1.27227 1.78907 1.15271 1.19723 0.91031 1.47846 1.34189 1.13667 1.08680 0.64220 1.74906 1.13712 1.00511 1.23035 1.42983 1.42083 1.18246 1.09107 0.72827 0.92481 0.89351 0.93137 0.88280 0.90315 0.78770 0.93914 0.91590 0.91713 0.80946 0.80059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.82 9.11 71.98 0.66 -3.16 16 2 C 0.14 3.76 3.47 45.35 0.16 3.92 16 3 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 4 C -0.12 -3.49 6.11 31.79 0.19 -3.30 16 5 C 0.17 6.00 3.69 46.38 0.17 6.17 16 6 H 0.07 2.38 8.13 -2.39 -0.02 2.36 16 7 N -0.72 -33.04 5.28 -316.36 -1.67 -34.71 16 8 C -0.25 -12.76 9.98 84.03 0.84 -11.92 16 9 H 0.08 3.79 7.83 -2.91 -0.02 3.77 16 10 C -0.06 -3.32 5.50 84.86 0.47 -2.85 16 11 N -0.96 -56.29 13.06 21.65 0.28 -56.01 16 12 Si 0.96 45.01 29.55 68.60 2.03 47.03 16 13 H -0.28 -13.02 7.11 99.48 0.71 -12.32 16 14 H -0.30 -14.02 7.11 99.48 0.71 -13.31 16 15 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 16 C 0.07 2.38 5.13 86.86 0.45 2.82 16 17 N -0.61 -18.35 3.06 -792.73 -2.43 -20.78 16 18 C 0.60 18.90 7.61 86.43 0.66 19.56 16 19 O -0.55 -19.29 15.87 -4.38 -0.07 -19.36 16 20 C -0.03 -0.99 6.83 40.36 0.28 -0.72 16 21 C -0.11 -2.54 10.61 22.50 0.24 -2.30 16 22 C -0.13 -2.80 10.79 22.43 0.24 -2.56 16 23 C 0.09 2.36 7.12 40.89 0.29 2.65 16 24 C 0.23 6.01 8.21 137.11 1.13 7.13 16 25 N -0.31 -9.41 12.54 -52.41 -0.66 -10.07 16 26 N -0.05 -1.35 13.46 37.02 0.50 -0.85 16 27 N -0.19 -3.04 7.90 37.02 0.29 -2.75 16 28 H 0.50 2.29 8.96 -347.51 -3.12 -0.83 16 29 N -0.27 -5.40 12.39 -52.36 -0.65 -6.05 16 30 N -0.52 -14.90 5.41 -172.29 -0.93 -15.83 16 31 H 0.43 13.05 5.20 -92.71 -0.48 12.57 16 32 H 0.06 1.57 6.83 -2.39 -0.02 1.55 16 33 H 0.09 1.77 8.14 -2.38 -0.02 1.75 16 34 H 0.05 1.31 8.14 -2.38 -0.02 1.29 16 35 H 0.10 2.50 8.14 -2.39 -0.02 2.48 16 36 H 0.08 2.29 7.70 -2.39 -0.02 2.28 16 37 H 0.38 18.73 7.71 -92.71 -0.71 18.01 16 38 H 0.25 14.48 8.31 -92.71 -0.77 13.71 16 39 H 0.07 2.19 5.55 -2.39 -0.01 2.18 16 40 H 0.06 2.28 8.10 -2.38 -0.02 2.26 16 41 H 0.17 3.44 8.06 -2.91 -0.02 3.41 16 42 H 0.18 2.74 8.06 -2.91 -0.02 2.72 16 Total: -1.00 -68.96 357.01 -0.74 -69.70 By element: Atomic # 1 Polarization: 37.43 SS G_CDS: -3.20 Total: 34.24 kcal Atomic # 6 Polarization: 9.68 SS G_CDS: 5.76 Total: 15.44 kcal Atomic # 7 Polarization: -141.78 SS G_CDS: -5.26 Total: -147.05 kcal Atomic # 8 Polarization: -19.29 SS G_CDS: -0.07 Total: -19.36 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.03 kcal Total: -68.96 -0.74 -69.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001603859118.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 210.380 kcal (2) G-P(sol) polarization free energy of solvation -68.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 141.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.699 kcal (6) G-S(sol) free energy of system = (1) + (5) 140.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds