Wall clock time and date at job start Tue Mar 31 2020 17:18:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 110.41140 * 2 1 4 4 C 1.55133 * 110.34222 * 122.43503 * 2 1 3 5 5 C 1.55160 * 101.48349 * 156.05745 * 4 2 1 6 6 H 1.09007 * 110.71656 * 82.70053 * 5 4 2 7 7 N 1.46492 * 110.72229 * 205.97100 * 5 4 2 8 8 C 1.36934 * 120.00060 * 199.98149 * 7 5 4 9 9 H 1.08004 * 120.00346 * 359.97438 * 8 7 5 10 10 C 1.38816 * 120.00038 * 179.97438 * 8 7 5 11 11 N 1.31618 * 119.99997 * 359.97438 * 10 8 7 12 12 Si 1.86805 * 120.00034 * 179.97438 * 10 8 7 13 13 H 1.48503 * 109.46703 * 60.00522 * 12 10 8 14 14 H 1.48501 * 109.46948 * 180.02562 * 12 10 8 15 15 H 1.48493 * 109.47181 * 300.00208 * 12 10 8 16 16 C 1.54321 * 102.94522 * 324.33852 * 5 4 2 17 17 N 1.47028 * 107.27061 * 22.19048 * 16 5 4 18 18 C 1.34772 * 125.64438 * 181.02327 * 17 16 5 19 19 O 1.21720 * 119.99785 * 180.02562 * 18 17 16 20 20 C 1.46606 * 120.00362 * 0.02562 * 18 17 16 21 21 C 1.38035 * 126.00789 * 180.02562 * 20 18 17 22 22 C 1.39390 * 107.42574 * 179.73510 * 21 20 18 23 23 C 1.37748 * 107.65494 * 359.97438 * 22 21 20 24 24 C 1.47919 * 125.81992 * 180.02562 * 23 22 21 25 25 N 1.34202 * 126.70577 * 179.65942 * 24 23 22 26 26 N 1.28978 * 107.25540 * 179.83668 * 25 24 23 27 27 N 1.28724 * 108.99292 * 0.44016 * 26 25 24 28 28 H 0.97003 * 125.31749 * 179.68923 * 27 26 25 29 29 N 1.28869 * 109.36621 * 359.71762 * 27 26 25 30 30 N 1.36381 * 108.35955 * 359.97438 * 23 22 21 31 31 H 0.97007 * 125.70752 * 180.02562 * 30 23 22 32 32 H 1.09006 * 109.47072 * 180.84533 * 1 2 3 33 33 H 1.09001 * 109.47580 * 300.84241 * 1 2 3 34 34 H 1.08992 * 109.47467 * 60.84571 * 1 2 3 35 35 H 1.09007 * 111.18946 * 37.96039 * 4 2 1 36 36 H 1.08994 * 110.94238 * 274.05772 * 4 2 1 37 37 H 0.97007 * 119.99861 * 19.98126 * 7 5 4 38 38 H 0.97002 * 120.00113 * 179.97438 * 11 10 8 39 39 H 1.09003 * 109.88348 * 262.77157 * 16 5 4 40 40 H 1.09001 * 110.00946 * 141.67801 * 16 5 4 41 41 H 1.08000 * 126.28403 * 359.73709 * 21 20 18 42 42 H 1.08003 * 126.17196 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9101 1.0216 0.0000 4 6 2.0693 -0.7802 1.2277 5 6 3.4797 -1.1972 0.7334 6 1 4.1930 -0.3848 0.8729 7 7 3.9320 -2.4096 1.4200 8 6 5.2652 -2.7204 1.4538 9 1 5.9833 -2.0719 0.9738 10 6 5.6939 -3.8690 2.1049 11 7 4.8190 -4.6591 2.6902 12 14 7.5126 -4.2933 2.1503 13 1 8.2592 -3.1999 2.8227 14 1 7.7067 -5.5601 2.9004 15 1 8.0173 -4.4575 0.7634 16 6 3.2525 -1.4725 -0.7679 17 7 2.0431 -0.7384 -1.1682 18 6 1.4973 -0.7364 -2.4005 19 8 0.4902 -0.0886 -2.6189 20 6 2.1165 -1.5144 -3.4778 21 6 1.6651 -1.6006 -4.7794 22 6 2.5425 -2.4339 -5.4712 23 6 3.5151 -2.8436 -4.5860 24 6 4.6494 -3.7396 -4.8998 25 7 5.6095 -4.1447 -4.0541 26 7 6.4025 -4.9164 -4.7168 27 7 5.9860 -5.0011 -5.9319 28 1 6.4097 -5.5176 -6.6352 29 7 4.9184 -4.2923 -6.0681 30 7 3.2546 -2.2814 -3.3711 31 1 3.7825 -2.4023 -2.5663 32 1 -0.3633 -1.0276 0.0152 33 1 -0.3634 0.5268 0.8823 34 1 -0.3634 0.5006 -0.8974 35 1 1.4549 -1.6554 1.4393 36 1 2.1372 -0.1325 2.1017 37 1 3.2871 -2.9923 1.8508 38 1 5.1185 -5.4619 3.1449 39 1 3.1090 -2.5406 -0.9315 40 1 4.1076 -1.1208 -1.3452 41 1 0.7924 -1.1120 -5.1868 42 1 2.4729 -2.7081 -6.5135 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001603859233.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:18:45 Heat of formation + Delta-G solvation = 162.306559 kcal Electronic energy + Delta-G solvation = -28291.253695 eV Core-core repulsion = 24311.046561 eV Total energy + Delta-G solvation = -3980.207134 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.150 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -44.58066 -41.41213 -39.56084 -37.36209 -34.49452 -34.26402 -33.55252 -32.21922 -31.47410 -30.91791 -29.13321 -28.47075 -25.70855 -24.81295 -24.68108 -23.88557 -22.53993 -21.11542 -20.58534 -20.04996 -19.84898 -19.25660 -17.42391 -17.29389 -17.17309 -16.49713 -16.01521 -15.19099 -14.85696 -14.53198 -14.28098 -14.02046 -13.78990 -13.67037 -13.43354 -13.24729 -12.94807 -12.85359 -12.62606 -12.25849 -12.17411 -11.97217 -11.82779 -11.53006 -11.30442 -11.28602 -11.08382 -11.06830 -10.82454 -10.74500 -10.41845 -10.12733 -9.80873 -9.66159 -9.15278 -9.06237 -8.55141 -8.11807 -7.17860 -5.89856 -3.22131 0.71742 1.15624 1.95252 1.99634 2.80821 2.90002 3.10691 3.39568 3.43403 3.44428 3.45563 3.63787 4.15725 4.46490 4.57968 4.94810 5.04244 5.07848 5.16886 5.19011 5.27043 5.35684 5.39611 5.46936 5.53821 5.75130 5.79017 5.87025 5.90941 6.00682 6.03241 6.09247 6.20164 6.31514 6.33736 6.38206 6.56976 6.60536 6.72741 6.78275 7.20000 7.57930 7.64250 7.99338 8.23679 8.27194 9.39533 9.90720 10.25499 11.31578 Molecular weight = 331.15amu Principal moments of inertia in cm(-1) A = 0.007011 B = 0.005564 C = 0.003195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3992.785828 B = 5031.425901 C = 8760.698447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.139 3.861 3 H 0.077 0.923 4 C -0.136 4.136 5 C 0.176 3.824 6 H 0.069 0.931 7 N -0.711 5.711 8 C -0.256 4.256 9 H 0.073 0.927 10 C -0.003 4.003 11 N -0.928 5.928 12 Si 0.906 3.094 13 H -0.284 1.284 14 H -0.290 1.290 15 H -0.281 1.281 16 C 0.056 3.944 17 N -0.608 5.608 18 C 0.601 3.399 19 O -0.533 6.533 20 C -0.011 4.011 21 C -0.117 4.117 22 C -0.146 4.146 23 C 0.100 3.900 24 C 0.242 3.758 25 N -0.265 5.265 26 N -0.041 5.041 27 N -0.228 5.228 28 H 0.476 0.524 29 N -0.283 5.283 30 N -0.513 5.513 31 H 0.432 0.568 32 H 0.054 0.946 33 H 0.060 0.940 34 H 0.085 0.915 35 H 0.078 0.922 36 H 0.083 0.917 37 H 0.388 0.612 38 H 0.258 0.742 39 H 0.075 0.925 40 H 0.059 0.941 41 H 0.157 0.843 42 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.327 4.141 -15.915 16.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.036 3.964 3 H 0.095 0.905 4 C -0.175 4.175 5 C 0.063 3.937 6 H 0.087 0.913 7 N -0.351 5.351 8 C -0.386 4.386 9 H 0.091 0.909 10 C -0.200 4.200 11 N -0.574 5.574 12 Si 0.736 3.264 13 H -0.211 1.211 14 H -0.216 1.216 15 H -0.208 1.208 16 C -0.070 4.070 17 N -0.341 5.341 18 C 0.390 3.610 19 O -0.410 6.410 20 C -0.128 4.128 21 C -0.143 4.143 22 C -0.174 4.174 23 C -0.020 4.020 24 C -0.038 4.038 25 N -0.138 5.138 26 N -0.036 5.036 27 N -0.074 5.074 28 H 0.331 0.669 29 N -0.136 5.136 30 N -0.114 5.114 31 H 0.278 0.722 32 H 0.073 0.927 33 H 0.079 0.921 34 H 0.103 0.897 35 H 0.097 0.903 36 H 0.102 0.898 37 H 0.223 0.777 38 H 0.068 0.932 39 H 0.093 0.907 40 H 0.077 0.923 41 H 0.174 0.826 42 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -3.026 4.084 -15.696 16.499 hybrid contribution 1.216 -0.935 -0.046 1.535 sum -1.810 3.150 -15.742 16.156 Atomic orbital electron populations 1.22174 0.93996 1.02698 1.03284 1.21949 0.95036 0.95289 0.84142 0.90550 1.23204 0.97438 1.00469 0.96376 1.21126 0.93505 0.91375 0.87651 0.91263 1.42387 1.06096 1.23673 1.62933 1.19180 0.83735 1.05610 1.30105 0.90936 1.24761 0.97803 0.97384 1.00031 1.69647 1.32813 1.15156 1.39792 0.86291 0.84771 0.77496 0.77825 1.21091 1.21615 1.20777 1.23598 0.85189 0.96355 1.01886 1.48564 1.28328 1.48312 1.08920 1.16652 0.83398 0.80761 0.80195 1.90765 1.24517 1.44049 1.81700 1.20635 0.91916 1.03239 0.97053 1.21178 1.01080 1.01324 0.90758 1.21071 0.94878 1.01950 0.99460 1.16942 0.95784 1.01987 0.87289 1.22503 0.96063 0.99139 0.86131 1.76333 1.02579 1.09655 1.25264 1.78975 1.19987 1.13769 0.90855 1.47770 1.16491 1.32308 1.10845 0.66940 1.74941 1.04048 1.10740 1.23841 1.42851 1.21922 1.35593 1.11076 0.72194 0.92660 0.92141 0.89666 0.90291 0.89822 0.77735 0.93204 0.90729 0.92278 0.82579 0.82916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.21 8.71 37.16 0.32 -1.88 16 2 C 0.14 1.96 3.78 -66.30 -0.25 1.71 16 3 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 4 C -0.14 -2.04 6.12 -24.46 -0.15 -2.19 16 5 C 0.18 3.15 3.59 -66.10 -0.24 2.91 16 6 H 0.07 1.23 8.12 -51.92 -0.42 0.81 16 7 N -0.71 -16.31 5.18 -51.65 -0.27 -16.57 16 8 C -0.26 -6.62 9.98 -15.06 -0.15 -6.77 16 9 H 0.07 1.81 7.83 -52.48 -0.41 1.40 16 10 C 0.00 -0.07 5.50 -17.43 -0.10 -0.17 16 11 N -0.93 -26.83 13.06 55.49 0.72 -26.11 16 12 Si 0.91 21.70 29.55 -169.99 -5.02 16.67 16 13 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 14 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 15 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 16 C 0.06 0.93 4.86 -3.06 -0.01 0.91 16 17 N -0.61 -9.42 3.24 -164.46 -0.53 -9.96 16 18 C 0.60 9.69 7.60 -12.89 -0.10 9.59 16 19 O -0.53 -9.34 14.52 5.17 0.08 -9.26 16 20 C -0.01 -0.16 6.88 -81.95 -0.56 -0.72 16 21 C -0.12 -1.52 10.60 -39.23 -0.42 -1.93 16 22 C -0.15 -1.76 10.79 -39.33 -0.42 -2.18 16 23 C 0.10 1.39 7.12 -82.06 -0.58 0.81 16 24 C 0.24 3.38 8.21 -156.24 -1.28 2.10 16 25 N -0.26 -4.17 12.54 32.09 0.40 -3.76 16 26 N -0.04 -0.53 13.46 60.35 0.81 0.28 16 27 N -0.23 -2.09 7.90 60.35 0.48 -1.61 16 28 H 0.48 1.80 8.96 -340.33 -3.05 -1.25 16 29 N -0.28 -3.22 12.39 32.10 0.40 -2.83 16 30 N -0.51 -7.54 5.64 -5.81 -0.03 -7.58 16 31 H 0.43 6.67 4.88 -40.82 -0.20 6.47 16 32 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 33 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.08 1.27 5.88 -51.93 -0.31 0.96 16 35 H 0.08 1.25 7.93 -51.93 -0.41 0.84 16 36 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 37 H 0.39 9.58 7.71 -40.82 -0.31 9.27 16 38 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 39 H 0.07 1.35 6.98 -51.93 -0.36 0.99 16 40 H 0.06 0.94 7.20 -51.93 -0.37 0.56 16 41 H 0.16 1.76 8.06 -52.49 -0.42 1.34 16 42 H 0.15 1.46 8.06 -52.48 -0.42 1.04 16 LS Contribution 355.04 15.07 5.35 5.35 Total: -1.00 -32.04 355.04 -9.08 -41.13 By element: Atomic # 1 Polarization: 19.59 SS G_CDS: -7.52 Total: 12.06 kcal Atomic # 6 Polarization: 6.13 SS G_CDS: -3.94 Total: 2.19 kcal Atomic # 7 Polarization: -70.12 SS G_CDS: 1.98 Total: -68.14 kcal Atomic # 8 Polarization: -9.34 SS G_CDS: 0.08 Total: -9.26 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -32.04 -9.08 -41.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001603859233.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 203.432 kcal (2) G-P(sol) polarization free energy of solvation -32.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 171.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.125 kcal (6) G-S(sol) free energy of system = (1) + (5) 162.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds