Wall clock time and date at job start Tue Mar 31 2020 17:18:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 110.41140 * 2 1 4 4 C 1.55133 * 110.34222 * 122.43503 * 2 1 3 5 5 C 1.55160 * 101.48349 * 156.05745 * 4 2 1 6 6 H 1.09007 * 110.71656 * 82.70053 * 5 4 2 7 7 N 1.46492 * 110.72229 * 205.97100 * 5 4 2 8 8 C 1.36934 * 120.00060 * 199.98149 * 7 5 4 9 9 H 1.08004 * 120.00346 * 359.97438 * 8 7 5 10 10 C 1.38816 * 120.00038 * 179.97438 * 8 7 5 11 11 N 1.31618 * 119.99997 * 359.97438 * 10 8 7 12 12 Si 1.86805 * 120.00034 * 179.97438 * 10 8 7 13 13 H 1.48503 * 109.46703 * 60.00522 * 12 10 8 14 14 H 1.48501 * 109.46948 * 180.02562 * 12 10 8 15 15 H 1.48493 * 109.47181 * 300.00208 * 12 10 8 16 16 C 1.54321 * 102.94522 * 324.33852 * 5 4 2 17 17 N 1.47028 * 107.27061 * 22.19048 * 16 5 4 18 18 C 1.34772 * 125.64438 * 181.02327 * 17 16 5 19 19 O 1.21720 * 119.99785 * 180.02562 * 18 17 16 20 20 C 1.46606 * 120.00362 * 0.02562 * 18 17 16 21 21 C 1.38035 * 126.00789 * 180.02562 * 20 18 17 22 22 C 1.39390 * 107.42574 * 179.73510 * 21 20 18 23 23 C 1.37748 * 107.65494 * 359.97438 * 22 21 20 24 24 C 1.47919 * 125.81992 * 180.02562 * 23 22 21 25 25 N 1.34202 * 126.70577 * 179.65942 * 24 23 22 26 26 N 1.28978 * 107.25540 * 179.83668 * 25 24 23 27 27 N 1.28724 * 108.99292 * 0.44016 * 26 25 24 28 28 H 0.97003 * 125.31749 * 179.68923 * 27 26 25 29 29 N 1.28869 * 109.36621 * 359.71762 * 27 26 25 30 30 N 1.36381 * 108.35955 * 359.97438 * 23 22 21 31 31 H 0.97007 * 125.70752 * 180.02562 * 30 23 22 32 32 H 1.09006 * 109.47072 * 180.84533 * 1 2 3 33 33 H 1.09001 * 109.47580 * 300.84241 * 1 2 3 34 34 H 1.08992 * 109.47467 * 60.84571 * 1 2 3 35 35 H 1.09007 * 111.18946 * 37.96039 * 4 2 1 36 36 H 1.08994 * 110.94238 * 274.05772 * 4 2 1 37 37 H 0.97007 * 119.99861 * 19.98126 * 7 5 4 38 38 H 0.97002 * 120.00113 * 179.97438 * 11 10 8 39 39 H 1.09003 * 109.88348 * 262.77157 * 16 5 4 40 40 H 1.09001 * 110.00946 * 141.67801 * 16 5 4 41 41 H 1.08000 * 126.28403 * 359.73709 * 21 20 18 42 42 H 1.08003 * 126.17196 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9101 1.0216 0.0000 4 6 2.0693 -0.7802 1.2277 5 6 3.4797 -1.1972 0.7334 6 1 4.1930 -0.3848 0.8729 7 7 3.9320 -2.4096 1.4200 8 6 5.2652 -2.7204 1.4538 9 1 5.9833 -2.0719 0.9738 10 6 5.6939 -3.8690 2.1049 11 7 4.8190 -4.6591 2.6902 12 14 7.5126 -4.2933 2.1503 13 1 8.2592 -3.1999 2.8227 14 1 7.7067 -5.5601 2.9004 15 1 8.0173 -4.4575 0.7634 16 6 3.2525 -1.4725 -0.7679 17 7 2.0431 -0.7384 -1.1682 18 6 1.4973 -0.7364 -2.4005 19 8 0.4902 -0.0886 -2.6189 20 6 2.1165 -1.5144 -3.4778 21 6 1.6651 -1.6006 -4.7794 22 6 2.5425 -2.4339 -5.4712 23 6 3.5151 -2.8436 -4.5860 24 6 4.6494 -3.7396 -4.8998 25 7 5.6095 -4.1447 -4.0541 26 7 6.4025 -4.9164 -4.7168 27 7 5.9860 -5.0011 -5.9319 28 1 6.4097 -5.5176 -6.6352 29 7 4.9184 -4.2923 -6.0681 30 7 3.2546 -2.2814 -3.3711 31 1 3.7825 -2.4023 -2.5663 32 1 -0.3633 -1.0276 0.0152 33 1 -0.3634 0.5268 0.8823 34 1 -0.3634 0.5006 -0.8974 35 1 1.4549 -1.6554 1.4393 36 1 2.1372 -0.1325 2.1017 37 1 3.2871 -2.9923 1.8508 38 1 5.1185 -5.4619 3.1449 39 1 3.1090 -2.5406 -0.9315 40 1 4.1076 -1.1208 -1.3452 41 1 0.7924 -1.1120 -5.1868 42 1 2.4729 -2.7081 -6.5135 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001603859233.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:18:44 Heat of formation + Delta-G solvation = 139.343814 kcal Electronic energy + Delta-G solvation = -28292.249434 eV Core-core repulsion = 24311.046561 eV Total energy + Delta-G solvation = -3981.202874 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.150 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -45.55248 -42.51224 -40.78979 -38.71239 -36.00367 -35.48406 -34.55194 -33.46348 -33.16160 -31.99887 -30.29726 -30.00420 -26.94597 -26.07358 -25.74283 -25.49616 -23.73346 -22.27462 -21.91631 -21.18084 -20.94972 -20.23446 -19.24518 -18.41469 -18.25836 -17.77836 -17.27430 -16.62246 -16.32909 -15.68425 -15.58091 -15.44219 -15.15862 -14.94630 -14.82396 -14.43650 -14.38300 -13.92510 -13.68648 -13.57522 -13.31721 -13.17300 -13.09691 -12.91803 -12.80801 -12.53358 -12.40459 -12.30232 -12.19728 -12.14150 -12.04861 -11.76502 -11.59232 -11.06078 -10.82815 -10.18541 -9.80480 -9.19863 -9.10439 -7.96479 -5.26656 -0.28393 0.11672 0.86926 1.20432 1.48453 1.51414 1.55747 1.75036 1.87037 1.95167 2.25869 2.55387 2.60664 3.14908 3.30535 3.34587 3.74277 3.79604 3.81018 4.02298 4.11738 4.20960 4.23597 4.25765 4.35101 4.43763 4.48113 4.57991 4.70044 4.80971 4.90318 5.04184 5.09205 5.10965 5.22947 5.30216 5.50201 5.52964 5.54717 5.57194 5.77603 6.06465 6.23882 6.37110 6.99631 7.00749 7.32722 8.02539 8.26173 9.25928 Molecular weight = 331.15amu Principal moments of inertia in cm(-1) A = 0.007011 B = 0.005564 C = 0.003195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3992.785828 B = 5031.425901 C = 8760.698447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.138 3.862 3 H 0.094 0.906 4 C -0.124 4.124 5 C 0.169 3.831 6 H 0.076 0.924 7 N -0.722 5.722 8 C -0.244 4.244 9 H 0.080 0.920 10 C -0.064 4.064 11 N -0.965 5.965 12 Si 0.962 3.038 13 H -0.275 1.275 14 H -0.298 1.298 15 H -0.281 1.281 16 C 0.073 3.927 17 N -0.608 5.608 18 C 0.599 3.401 19 O -0.549 6.549 20 C -0.036 4.036 21 C -0.108 4.108 22 C -0.132 4.132 23 C 0.090 3.910 24 C 0.228 3.772 25 N -0.308 5.308 26 N -0.055 5.055 27 N -0.192 5.192 28 H 0.498 0.502 29 N -0.268 5.268 30 N -0.521 5.521 31 H 0.425 0.575 32 H 0.042 0.958 33 H 0.085 0.915 34 H 0.073 0.927 35 H 0.068 0.932 36 H 0.103 0.897 37 H 0.377 0.623 38 H 0.251 0.749 39 H 0.055 0.945 40 H 0.065 0.935 41 H 0.174 0.826 42 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.209 5.077 -17.729 18.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.036 3.964 3 H 0.112 0.888 4 C -0.163 4.163 5 C 0.058 3.942 6 H 0.094 0.906 7 N -0.361 5.361 8 C -0.376 4.376 9 H 0.098 0.902 10 C -0.257 4.257 11 N -0.614 5.614 12 Si 0.792 3.208 13 H -0.201 1.201 14 H -0.225 1.225 15 H -0.207 1.207 16 C -0.054 4.054 17 N -0.341 5.341 18 C 0.389 3.611 19 O -0.429 6.429 20 C -0.153 4.153 21 C -0.134 4.134 22 C -0.160 4.160 23 C -0.030 4.030 24 C -0.052 4.052 25 N -0.180 5.180 26 N -0.049 5.049 27 N -0.044 5.044 28 H 0.358 0.642 29 N -0.122 5.122 30 N -0.122 5.122 31 H 0.269 0.731 32 H 0.061 0.939 33 H 0.104 0.896 34 H 0.092 0.908 35 H 0.086 0.914 36 H 0.121 0.879 37 H 0.209 0.791 38 H 0.060 0.940 39 H 0.073 0.927 40 H 0.083 0.917 41 H 0.191 0.809 42 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -2.898 5.062 -17.550 18.494 hybrid contribution 1.161 -1.207 0.351 1.711 sum -1.737 3.855 -17.199 17.711 Atomic orbital electron populations 1.22088 0.93251 1.02065 1.03889 1.22097 0.95607 0.95728 0.83006 0.88806 1.23122 0.95144 1.00502 0.97513 1.21339 0.95295 0.89581 0.87992 0.90566 1.42496 1.04977 1.25055 1.63567 1.19552 0.85171 1.04891 1.27955 0.90197 1.25447 1.01135 0.98024 1.01078 1.69787 1.34251 1.15677 1.41724 0.85380 0.80971 0.76951 0.77517 1.20131 1.22470 1.20703 1.23191 0.85973 0.95424 1.00773 1.48575 1.27954 1.48254 1.09364 1.16825 0.83187 0.80614 0.80430 1.90752 1.25179 1.44915 1.82015 1.20663 0.92678 1.04367 0.97581 1.21477 1.01299 1.00719 0.89948 1.21390 0.93510 1.00700 1.00364 1.17266 0.96301 1.02096 0.87329 1.22596 0.96194 0.99813 0.86596 1.76305 1.03781 1.11131 1.26799 1.78903 1.20081 1.14008 0.91942 1.47844 1.15296 1.30711 1.10530 0.64216 1.74910 1.04261 1.10333 1.22668 1.42825 1.22022 1.36130 1.11228 0.73052 0.93927 0.89642 0.90831 0.91353 0.87865 0.79067 0.94026 0.92671 0.91664 0.80901 0.80067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.96 8.71 71.98 0.63 -3.33 16 2 C 0.14 3.69 3.78 45.55 0.17 3.86 16 3 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 4 C -0.12 -3.58 6.12 32.07 0.20 -3.38 16 5 C 0.17 5.93 3.59 46.18 0.17 6.09 16 6 H 0.08 2.60 8.12 -2.38 -0.02 2.58 16 7 N -0.72 -33.37 5.18 -317.33 -1.64 -35.01 16 8 C -0.24 -12.66 9.98 84.03 0.84 -11.82 16 9 H 0.08 3.95 7.83 -2.91 -0.02 3.93 16 10 C -0.06 -3.52 5.50 84.86 0.47 -3.05 16 11 N -0.96 -57.10 13.06 21.65 0.28 -56.82 16 12 Si 0.96 45.08 29.55 68.60 2.03 47.10 16 13 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16 14 H -0.30 -14.23 7.11 99.48 0.71 -13.52 16 15 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 16 C 0.07 2.40 4.86 86.73 0.42 2.83 16 17 N -0.61 -18.50 3.24 -792.45 -2.57 -21.07 16 18 C 0.60 18.99 7.60 86.43 0.66 19.65 16 19 O -0.55 -18.84 14.52 -4.41 -0.06 -18.90 16 20 C -0.04 -1.05 6.88 40.37 0.28 -0.77 16 21 C -0.11 -2.61 10.60 22.50 0.24 -2.37 16 22 C -0.13 -2.90 10.79 22.43 0.24 -2.66 16 23 C 0.09 2.41 7.12 40.89 0.29 2.70 16 24 C 0.23 6.16 8.21 137.11 1.13 7.29 16 25 N -0.31 -9.61 12.54 -52.40 -0.66 -10.26 16 26 N -0.05 -1.38 13.46 37.02 0.50 -0.88 16 27 N -0.19 -3.13 7.90 37.02 0.29 -2.84 16 28 H 0.50 2.49 8.96 -347.50 -3.12 -0.63 16 29 N -0.27 -5.55 12.39 -52.35 -0.65 -6.20 16 30 N -0.52 -15.28 5.64 -172.30 -0.97 -16.25 16 31 H 0.42 13.40 4.88 -92.70 -0.45 12.95 16 32 H 0.04 1.18 8.14 -2.38 -0.02 1.16 16 33 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 34 H 0.07 2.09 5.88 -2.39 -0.01 2.08 16 35 H 0.07 2.14 7.93 -2.38 -0.02 2.12 16 36 H 0.10 2.58 8.14 -2.39 -0.02 2.56 16 37 H 0.38 19.01 7.71 -92.70 -0.72 18.30 16 38 H 0.25 14.60 8.31 -92.71 -0.77 13.83 16 39 H 0.06 2.06 6.98 -2.39 -0.02 2.04 16 40 H 0.07 2.06 7.20 -2.39 -0.02 2.05 16 41 H 0.17 3.51 8.06 -2.91 -0.02 3.49 16 42 H 0.18 2.85 8.06 -2.91 -0.02 2.82 16 Total: -1.00 -69.40 355.04 -0.90 -70.30 By element: Atomic # 1 Polarization: 38.97 SS G_CDS: -3.17 Total: 35.81 kcal Atomic # 6 Polarization: 9.31 SS G_CDS: 5.72 Total: 15.03 kcal Atomic # 7 Polarization: -143.92 SS G_CDS: -5.42 Total: -149.34 kcal Atomic # 8 Polarization: -18.84 SS G_CDS: -0.06 Total: -18.90 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.10 kcal Total: -69.40 -0.90 -70.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001603859233.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 209.641 kcal (2) G-P(sol) polarization free energy of solvation -69.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 140.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.297 kcal (6) G-S(sol) free energy of system = (1) + (5) 139.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds