Wall clock time and date at job start Tue Mar 31 2020 17:18:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08995 * 109.87805 * 2 1 4 4 C 1.54329 * 109.88259 * 238.98324 * 2 1 3 5 5 C 1.55160 * 102.94218 * 262.77721 * 4 2 1 6 6 H 1.08997 * 111.00443 * 82.57183 * 5 4 2 7 7 N 1.46495 * 111.00207 * 206.38532 * 5 4 2 8 8 C 1.36936 * 119.99745 * 205.00177 * 7 5 4 9 9 H 1.07996 * 120.00284 * 359.97438 * 8 7 5 10 10 C 1.38818 * 119.99809 * 180.02562 * 8 7 5 11 11 N 1.31622 * 119.99744 * 179.97438 * 10 8 7 12 12 Si 1.86795 * 120.00103 * 359.97438 * 10 8 7 13 13 H 1.48493 * 109.47383 * 90.00201 * 12 10 8 14 14 H 1.48505 * 109.46950 * 209.99905 * 12 10 8 15 15 H 1.48502 * 109.47053 * 329.99769 * 12 10 8 16 16 C 1.54912 * 101.58007 * 324.49950 * 5 4 2 17 17 N 1.47019 * 109.88172 * 121.17638 * 2 1 3 18 18 C 1.34776 * 125.65033 * 300.42703 * 17 2 1 19 19 O 1.21711 * 119.99810 * 358.18051 * 18 17 2 20 20 C 1.46610 * 120.00270 * 178.17249 * 18 17 2 21 21 C 1.38028 * 126.00748 * 188.15955 * 20 18 17 22 22 C 1.39395 * 107.42873 * 180.02562 * 21 20 18 23 23 C 1.37755 * 107.65174 * 359.97438 * 22 21 20 24 24 C 1.47916 * 125.82114 * 180.02562 * 23 22 21 25 25 N 1.34213 * 126.70317 * 180.02562 * 24 23 22 26 26 N 1.28981 * 107.24728 * 179.97438 * 25 24 23 27 27 N 1.28719 * 108.99793 * 359.97438 * 26 25 24 28 28 H 0.97000 * 125.31200 * 180.02562 * 27 26 25 29 29 N 1.28865 * 109.36445 * 359.73164 * 27 26 25 30 30 N 1.36387 * 108.36099 * 359.73717 * 23 22 21 31 31 H 0.97003 * 125.71692 * 180.25771 * 30 23 22 32 32 H 1.09005 * 109.47784 * 181.01595 * 1 2 3 33 33 H 1.09000 * 109.47268 * 61.01555 * 1 2 3 34 34 H 1.09000 * 109.47125 * 301.01494 * 1 2 3 35 35 H 1.08997 * 110.71809 * 21.13646 * 4 2 1 36 36 H 1.08993 * 110.71998 * 144.23840 * 4 2 1 37 37 H 0.97003 * 120.00218 * 24.99918 * 7 5 4 38 38 H 0.96998 * 119.99734 * 180.02562 * 11 10 8 39 39 H 1.09006 * 110.36496 * 155.85041 * 16 5 4 40 40 H 1.09002 * 110.36204 * 278.05998 * 16 5 4 41 41 H 1.07994 * 126.28887 * 359.96718 * 21 20 18 42 42 H 1.07994 * 126.17904 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9005 1.0250 0.0000 4 6 2.0548 -0.7478 -1.2438 5 6 2.3518 -2.1686 -0.6954 6 1 1.4451 -2.7728 -0.6643 7 7 3.3929 -2.8296 -1.4861 8 6 3.4556 -4.1968 -1.5291 9 1 2.7378 -4.7878 -0.9797 10 6 4.4425 -4.8231 -2.2779 11 7 4.5031 -6.1373 -2.3188 12 14 5.6845 -3.8009 -3.2275 13 1 6.8617 -3.5256 -2.3653 14 1 6.1195 -4.5471 -4.4355 15 1 5.0597 -2.5174 -3.6368 16 6 2.8567 -1.8509 0.7342 17 7 2.0299 -0.7157 1.1829 18 6 1.7755 -0.3878 2.4652 19 8 1.1041 0.5948 2.7203 20 6 2.3072 -1.2148 3.5527 21 6 1.9978 -1.0908 4.8921 22 6 2.7176 -2.0672 5.5790 23 6 3.4539 -2.7724 4.6527 24 6 4.3621 -3.9021 4.9473 25 7 5.0875 -4.6007 4.0601 26 7 5.7417 -5.4949 4.7204 27 7 5.4575 -5.3837 5.9709 28 1 5.8187 -5.9390 6.6795 29 7 4.6229 -4.4156 6.1350 30 7 3.1979 -2.2556 3.4168 31 1 3.5815 -2.5671 2.5821 32 1 -0.3635 -1.0275 0.0182 33 1 -0.3634 0.4980 -0.8989 34 1 -0.3633 0.5295 0.8807 35 1 1.2917 -0.7863 -2.0211 36 1 2.9639 -0.2791 -1.6205 37 1 4.0379 -2.2987 -1.9793 38 1 5.1929 -6.5750 -2.8417 39 1 2.7086 -2.7101 1.3885 40 1 3.9095 -1.5697 0.7109 41 1 1.3229 -0.3692 5.3281 42 1 2.7009 -2.2397 6.6450 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001603859236.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:18:52 Heat of formation + Delta-G solvation = 168.384994 kcal Electronic energy + Delta-G solvation = -28266.101974 eV Core-core repulsion = 24286.158420 eV Total energy + Delta-G solvation = -3979.943554 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.150 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -44.57776 -41.47495 -39.64097 -37.51800 -34.49135 -34.43173 -33.55664 -32.31978 -31.60143 -30.95340 -29.22575 -28.88286 -25.84489 -24.92927 -24.71960 -23.71632 -22.53530 -21.13995 -20.85457 -20.01673 -19.78990 -19.27110 -17.81758 -17.59618 -17.29044 -16.39491 -15.86627 -15.37523 -14.92303 -14.56878 -14.25850 -14.12612 -13.90152 -13.67663 -13.48533 -13.15126 -12.96193 -12.86312 -12.78716 -12.68293 -12.19029 -12.06974 -11.97543 -11.60993 -11.52402 -11.29158 -11.17221 -11.08070 -10.92617 -10.75278 -10.44350 -10.15629 -10.01400 -9.71305 -9.19751 -9.12403 -8.64911 -8.16159 -7.48714 -5.89742 -3.29434 0.70638 1.14929 1.92443 1.99744 2.75757 2.87662 3.01947 3.28931 3.31532 3.37411 3.38378 3.62070 4.14822 4.42903 4.47514 4.85485 4.88660 5.05136 5.06605 5.15660 5.19272 5.25420 5.35105 5.38867 5.45242 5.60422 5.66740 5.73933 5.79127 5.87840 5.94536 6.00044 6.09847 6.20154 6.20972 6.33321 6.41050 6.53898 6.59651 6.73160 7.14626 7.53786 7.82314 7.99790 8.15616 8.28025 9.03609 9.75590 9.92303 11.27465 Molecular weight = 331.15amu Principal moments of inertia in cm(-1) A = 0.007806 B = 0.005054 C = 0.003199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3586.184432 B = 5538.398252 C = 8750.356240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.141 3.859 3 H 0.075 0.925 4 C -0.142 4.142 5 C 0.184 3.816 6 H 0.080 0.920 7 N -0.733 5.733 8 C -0.260 4.260 9 H 0.092 0.908 10 C 0.015 3.985 11 N -0.924 5.924 12 Si 0.882 3.118 13 H -0.282 1.282 14 H -0.289 1.289 15 H -0.276 1.276 16 C 0.055 3.945 17 N -0.608 5.608 18 C 0.602 3.398 19 O -0.532 6.532 20 C -0.012 4.012 21 C -0.116 4.116 22 C -0.146 4.146 23 C 0.102 3.898 24 C 0.240 3.760 25 N -0.264 5.264 26 N -0.039 5.039 27 N -0.228 5.228 28 H 0.476 0.524 29 N -0.283 5.283 30 N -0.515 5.515 31 H 0.432 0.568 32 H 0.059 0.941 33 H 0.064 0.936 34 H 0.068 0.932 35 H 0.086 0.914 36 H 0.075 0.925 37 H 0.365 0.635 38 H 0.262 0.738 39 H 0.072 0.928 40 H 0.074 0.926 41 H 0.157 0.843 42 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.125 7.853 15.319 17.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.038 3.962 3 H 0.093 0.907 4 C -0.180 4.180 5 C 0.071 3.929 6 H 0.098 0.902 7 N -0.374 5.374 8 C -0.390 4.390 9 H 0.110 0.890 10 C -0.182 4.182 11 N -0.570 5.570 12 Si 0.712 3.288 13 H -0.209 1.209 14 H -0.215 1.215 15 H -0.202 1.202 16 C -0.072 4.072 17 N -0.342 5.342 18 C 0.391 3.609 19 O -0.409 6.409 20 C -0.130 4.130 21 C -0.142 4.142 22 C -0.173 4.173 23 C -0.018 4.018 24 C -0.040 4.040 25 N -0.138 5.138 26 N -0.034 5.034 27 N -0.074 5.074 28 H 0.331 0.669 29 N -0.136 5.136 30 N -0.118 5.118 31 H 0.279 0.721 32 H 0.078 0.922 33 H 0.083 0.917 34 H 0.087 0.913 35 H 0.105 0.895 36 H 0.094 0.906 37 H 0.199 0.801 38 H 0.072 0.928 39 H 0.089 0.911 40 H 0.092 0.908 41 H 0.174 0.826 42 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -2.012 7.573 15.126 17.035 hybrid contribution 1.312 0.160 -0.488 1.408 sum -0.700 7.733 14.638 16.570 Atomic orbital electron populations 1.22149 0.94583 1.02614 1.02694 1.21515 0.94754 0.95950 0.83998 0.90701 1.23085 1.01983 0.96754 0.96222 1.21192 0.92769 0.91487 0.87435 0.90217 1.42677 1.34012 1.04543 1.56199 1.19045 1.13054 0.80372 1.26505 0.88978 1.24676 0.98633 0.95274 0.99640 1.69696 1.35855 1.06966 1.44485 0.86602 0.82267 0.79758 0.80176 1.20865 1.21545 1.20188 1.23749 0.95389 0.87218 1.00829 1.48525 1.50318 1.30623 1.04720 1.16640 0.80180 0.83835 0.80263 1.90814 1.40236 1.26884 1.83008 1.20567 1.01238 0.95142 0.96024 1.21179 1.02216 1.00648 0.90143 1.21081 0.99682 0.97598 0.98984 1.16959 1.02209 0.96469 0.86127 1.22497 0.98670 0.97590 0.85268 1.76342 1.07981 1.03772 1.25679 1.78987 1.17514 1.16992 0.89886 1.47773 1.28285 1.22431 1.08899 0.66917 1.74930 1.10697 1.03744 1.24184 1.43014 1.34490 1.25337 1.08934 0.72054 0.92218 0.91693 0.91260 0.89530 0.90636 0.80117 0.92802 0.91050 0.90764 0.82581 0.82874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.03 9.05 37.15 0.34 -1.69 16 2 C 0.14 1.89 3.48 -66.95 -0.23 1.66 16 3 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 4 C -0.14 -1.95 6.14 -24.89 -0.15 -2.10 16 5 C 0.18 3.13 3.71 -65.78 -0.24 2.89 16 6 H 0.08 1.43 8.09 -51.93 -0.42 1.01 16 7 N -0.73 -15.62 5.05 -51.35 -0.26 -15.88 16 8 C -0.26 -6.82 10.44 -15.06 -0.16 -6.98 16 9 H 0.09 2.61 8.06 -52.49 -0.42 2.18 16 10 C 0.01 0.42 5.50 -17.43 -0.10 0.32 16 11 N -0.92 -27.88 13.97 55.49 0.78 -27.10 16 12 Si 0.88 20.95 27.73 -169.99 -4.71 16.23 16 13 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 14 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 15 H -0.28 -6.07 6.52 56.52 0.37 -5.71 16 16 C 0.05 0.85 5.14 -2.53 -0.01 0.84 16 17 N -0.61 -8.96 3.08 -164.57 -0.51 -9.46 16 18 C 0.60 9.36 7.58 -12.88 -0.10 9.26 16 19 O -0.53 -9.23 15.86 5.18 0.08 -9.14 16 20 C -0.01 -0.17 6.84 -81.95 -0.56 -0.73 16 21 C -0.12 -1.45 10.61 -39.23 -0.42 -1.86 16 22 C -0.15 -1.70 10.79 -39.33 -0.42 -2.13 16 23 C 0.10 1.38 7.12 -82.06 -0.58 0.80 16 24 C 0.24 3.30 8.21 -156.24 -1.28 2.02 16 25 N -0.26 -4.12 12.54 32.09 0.40 -3.71 16 26 N -0.04 -0.50 13.46 60.35 0.81 0.31 16 27 N -0.23 -2.07 7.90 60.35 0.48 -1.60 16 28 H 0.48 1.79 8.96 -340.34 -3.05 -1.26 16 29 N -0.28 -3.18 12.39 32.10 0.40 -2.78 16 30 N -0.51 -7.27 5.41 -5.81 -0.03 -7.30 16 31 H 0.43 6.33 5.18 -40.82 -0.21 6.12 16 32 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 33 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.07 0.95 6.82 -51.93 -0.35 0.60 16 35 H 0.09 1.10 7.83 -51.93 -0.41 0.69 16 36 H 0.07 1.01 8.01 -51.93 -0.42 0.60 16 37 H 0.37 7.66 5.63 -40.82 -0.23 7.43 16 38 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 39 H 0.07 1.14 5.53 -51.93 -0.29 0.85 16 40 H 0.07 1.17 8.11 -51.93 -0.42 0.74 16 41 H 0.16 1.71 8.06 -52.49 -0.42 1.28 16 42 H 0.15 1.42 8.06 -52.49 -0.42 1.00 16 LS Contribution 353.82 15.07 5.33 5.33 Total: -1.00 -33.21 353.82 -8.66 -41.87 By element: Atomic # 1 Polarization: 18.46 SS G_CDS: -7.50 Total: 10.95 kcal Atomic # 6 Polarization: 6.21 SS G_CDS: -3.93 Total: 2.29 kcal Atomic # 7 Polarization: -69.60 SS G_CDS: 2.07 Total: -67.53 kcal Atomic # 8 Polarization: -9.23 SS G_CDS: 0.08 Total: -9.14 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -4.71 Total: 16.23 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -33.21 -8.66 -41.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001603859236.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 210.257 kcal (2) G-P(sol) polarization free energy of solvation -33.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 177.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.872 kcal (6) G-S(sol) free energy of system = (1) + (5) 168.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds