Wall clock time and date at job start Tue Mar 31 2020 17:18:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08995 * 109.87805 * 2 1 4 4 C 1.54329 * 109.88259 * 238.98324 * 2 1 3 5 5 C 1.55160 * 102.94218 * 262.77721 * 4 2 1 6 6 H 1.08997 * 111.00443 * 82.57183 * 5 4 2 7 7 N 1.46495 * 111.00207 * 206.38532 * 5 4 2 8 8 C 1.36936 * 119.99745 * 205.00177 * 7 5 4 9 9 H 1.07996 * 120.00284 * 359.97438 * 8 7 5 10 10 C 1.38818 * 119.99809 * 180.02562 * 8 7 5 11 11 N 1.31622 * 119.99744 * 179.97438 * 10 8 7 12 12 Si 1.86795 * 120.00103 * 359.97438 * 10 8 7 13 13 H 1.48493 * 109.47383 * 90.00201 * 12 10 8 14 14 H 1.48505 * 109.46950 * 209.99905 * 12 10 8 15 15 H 1.48502 * 109.47053 * 329.99769 * 12 10 8 16 16 C 1.54912 * 101.58007 * 324.49950 * 5 4 2 17 17 N 1.47019 * 109.88172 * 121.17638 * 2 1 3 18 18 C 1.34776 * 125.65033 * 300.42703 * 17 2 1 19 19 O 1.21711 * 119.99810 * 358.18051 * 18 17 2 20 20 C 1.46610 * 120.00270 * 178.17249 * 18 17 2 21 21 C 1.38028 * 126.00748 * 188.15955 * 20 18 17 22 22 C 1.39395 * 107.42873 * 180.02562 * 21 20 18 23 23 C 1.37755 * 107.65174 * 359.97438 * 22 21 20 24 24 C 1.47916 * 125.82114 * 180.02562 * 23 22 21 25 25 N 1.34213 * 126.70317 * 180.02562 * 24 23 22 26 26 N 1.28981 * 107.24728 * 179.97438 * 25 24 23 27 27 N 1.28719 * 108.99793 * 359.97438 * 26 25 24 28 28 H 0.97000 * 125.31200 * 180.02562 * 27 26 25 29 29 N 1.28865 * 109.36445 * 359.73164 * 27 26 25 30 30 N 1.36387 * 108.36099 * 359.73717 * 23 22 21 31 31 H 0.97003 * 125.71692 * 180.25771 * 30 23 22 32 32 H 1.09005 * 109.47784 * 181.01595 * 1 2 3 33 33 H 1.09000 * 109.47268 * 61.01555 * 1 2 3 34 34 H 1.09000 * 109.47125 * 301.01494 * 1 2 3 35 35 H 1.08997 * 110.71809 * 21.13646 * 4 2 1 36 36 H 1.08993 * 110.71998 * 144.23840 * 4 2 1 37 37 H 0.97003 * 120.00218 * 24.99918 * 7 5 4 38 38 H 0.96998 * 119.99734 * 180.02562 * 11 10 8 39 39 H 1.09006 * 110.36496 * 155.85041 * 16 5 4 40 40 H 1.09002 * 110.36204 * 278.05998 * 16 5 4 41 41 H 1.07994 * 126.28887 * 359.96718 * 21 20 18 42 42 H 1.07994 * 126.17904 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9005 1.0250 0.0000 4 6 2.0548 -0.7478 -1.2438 5 6 2.3518 -2.1686 -0.6954 6 1 1.4451 -2.7728 -0.6643 7 7 3.3929 -2.8296 -1.4861 8 6 3.4556 -4.1968 -1.5291 9 1 2.7378 -4.7878 -0.9797 10 6 4.4425 -4.8231 -2.2779 11 7 4.5031 -6.1373 -2.3188 12 14 5.6845 -3.8009 -3.2275 13 1 6.8617 -3.5256 -2.3653 14 1 6.1195 -4.5471 -4.4355 15 1 5.0597 -2.5174 -3.6368 16 6 2.8567 -1.8509 0.7342 17 7 2.0299 -0.7157 1.1829 18 6 1.7755 -0.3878 2.4652 19 8 1.1041 0.5948 2.7203 20 6 2.3072 -1.2148 3.5527 21 6 1.9978 -1.0908 4.8921 22 6 2.7176 -2.0672 5.5790 23 6 3.4539 -2.7724 4.6527 24 6 4.3621 -3.9021 4.9473 25 7 5.0875 -4.6007 4.0601 26 7 5.7417 -5.4949 4.7204 27 7 5.4575 -5.3837 5.9709 28 1 5.8187 -5.9390 6.6795 29 7 4.6229 -4.4156 6.1350 30 7 3.1979 -2.2556 3.4168 31 1 3.5815 -2.5671 2.5821 32 1 -0.3635 -1.0275 0.0182 33 1 -0.3634 0.4980 -0.8989 34 1 -0.3633 0.5295 0.8807 35 1 1.2917 -0.7863 -2.0211 36 1 2.9639 -0.2791 -1.6205 37 1 4.0379 -2.2987 -1.9793 38 1 5.1929 -6.5750 -2.8417 39 1 2.7086 -2.7101 1.3885 40 1 3.9095 -1.5697 0.7109 41 1 1.3229 -0.3692 5.3281 42 1 2.7009 -2.2397 6.6450 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001603859236.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:18:52 Heat of formation + Delta-G solvation = 143.865395 kcal Electronic energy + Delta-G solvation = -28267.165224 eV Core-core repulsion = 24286.158420 eV Total energy + Delta-G solvation = -3981.006803 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.150 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -45.54816 -42.54285 -40.82080 -38.81887 -36.14417 -35.47863 -34.54972 -33.62297 -33.28269 -32.00593 -30.53726 -30.15443 -26.99571 -26.10471 -25.73120 -25.33638 -23.75961 -22.36550 -22.05758 -21.09435 -20.93530 -20.24360 -19.71058 -18.74276 -18.25357 -17.58613 -17.20104 -16.58563 -16.39168 -15.79527 -15.65104 -15.35317 -15.07371 -15.02816 -14.70267 -14.62276 -14.24179 -14.08979 -13.93509 -13.76877 -13.46123 -13.21939 -13.15702 -13.10542 -12.85272 -12.52901 -12.34083 -12.28349 -12.18566 -12.05269 -11.94807 -11.84142 -11.50141 -11.27170 -10.99619 -10.19199 -9.87543 -9.40310 -9.19520 -8.02325 -5.39098 -0.28496 0.11992 0.86553 1.20464 1.39973 1.43392 1.50182 1.71212 1.86356 1.92787 2.23995 2.48804 2.60544 3.14878 3.19844 3.26180 3.65034 3.65370 3.76693 4.02233 4.05836 4.17800 4.20842 4.25198 4.34608 4.35193 4.40681 4.52649 4.66402 4.80102 4.89878 4.99324 5.04559 5.12150 5.17380 5.27838 5.41764 5.53417 5.56853 5.75614 5.76565 6.04915 6.20081 6.32554 6.95563 7.01118 7.05802 7.77722 7.97265 9.18338 Molecular weight = 331.15amu Principal moments of inertia in cm(-1) A = 0.007806 B = 0.005054 C = 0.003199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3586.184432 B = 5538.398252 C = 8750.356240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.138 3.862 3 H 0.086 0.914 4 C -0.128 4.128 5 C 0.175 3.825 6 H 0.067 0.933 7 N -0.734 5.734 8 C -0.237 4.237 9 H 0.058 0.942 10 C -0.055 4.055 11 N -0.979 5.979 12 Si 0.950 3.050 13 H -0.282 1.282 14 H -0.299 1.299 15 H -0.243 1.243 16 C 0.067 3.933 17 N -0.607 5.607 18 C 0.601 3.399 19 O -0.552 6.552 20 C -0.035 4.035 21 C -0.108 4.108 22 C -0.132 4.132 23 C 0.091 3.909 24 C 0.227 3.773 25 N -0.308 5.308 26 N -0.054 5.054 27 N -0.192 5.192 28 H 0.498 0.502 29 N -0.268 5.268 30 N -0.522 5.522 31 H 0.426 0.574 32 H 0.051 0.949 33 H 0.089 0.911 34 H 0.055 0.945 35 H 0.102 0.898 36 H 0.087 0.913 37 H 0.371 0.629 38 H 0.258 0.742 39 H 0.063 0.937 40 H 0.076 0.924 41 H 0.173 0.827 42 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.063 9.937 16.260 19.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.036 3.964 3 H 0.104 0.896 4 C -0.166 4.166 5 C 0.064 3.936 6 H 0.085 0.915 7 N -0.376 5.376 8 C -0.368 4.368 9 H 0.076 0.924 10 C -0.247 4.247 11 N -0.628 5.628 12 Si 0.777 3.223 13 H -0.208 1.208 14 H -0.226 1.226 15 H -0.167 1.167 16 C -0.059 4.059 17 N -0.340 5.340 18 C 0.391 3.609 19 O -0.431 6.431 20 C -0.152 4.152 21 C -0.134 4.134 22 C -0.159 4.159 23 C -0.029 4.029 24 C -0.053 4.053 25 N -0.180 5.180 26 N -0.049 5.049 27 N -0.044 5.044 28 H 0.358 0.642 29 N -0.122 5.122 30 N -0.124 5.124 31 H 0.272 0.728 32 H 0.070 0.930 33 H 0.108 0.892 34 H 0.074 0.926 35 H 0.121 0.879 36 H 0.105 0.895 37 H 0.205 0.795 38 H 0.067 0.933 39 H 0.081 0.919 40 H 0.094 0.906 41 H 0.191 0.809 42 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -1.974 9.708 16.097 18.901 hybrid contribution 1.217 -0.544 -0.579 1.453 sum -0.758 9.164 15.518 18.038 Atomic orbital electron populations 1.22101 0.93775 1.02203 1.03317 1.21665 0.95402 0.96224 0.83128 0.89604 1.23022 1.03072 0.93853 0.96665 1.21332 0.91162 0.93112 0.87985 0.91450 1.42559 1.35270 1.02722 1.57095 1.18965 1.11171 0.82425 1.24221 0.92373 1.25464 1.01274 0.96294 1.01648 1.69882 1.37228 1.09204 1.46500 0.85501 0.79523 0.79238 0.78062 1.20799 1.22637 1.16737 1.23429 0.95484 0.87479 0.99527 1.48520 1.50098 1.30242 1.05120 1.16787 0.79836 0.83683 0.80549 1.90797 1.41276 1.27784 1.83282 1.20600 1.02320 0.95772 0.96490 1.21475 1.01831 1.00679 0.89429 1.21393 0.98223 0.96353 0.99960 1.17263 1.02601 0.96753 0.86271 1.22619 0.99057 0.97987 0.85638 1.76314 1.09421 1.05060 1.27224 1.78916 1.17936 1.17021 0.91051 1.47846 1.26512 1.21378 1.08649 0.64225 1.74899 1.10546 1.03716 1.23030 1.42984 1.34806 1.25614 1.09032 0.72808 0.93031 0.89208 0.92556 0.87912 0.89484 0.79467 0.93350 0.91858 0.90625 0.80931 0.80119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.60 9.05 71.98 0.65 -2.95 16 2 C 0.14 3.43 3.48 45.34 0.16 3.58 16 3 H 0.09 2.00 8.14 -2.39 -0.02 1.99 16 4 C -0.13 -3.19 6.14 31.79 0.20 -3.00 16 5 C 0.17 5.83 3.71 46.39 0.17 6.00 16 6 H 0.07 2.42 8.09 -2.39 -0.02 2.41 16 7 N -0.73 -30.67 5.05 -316.38 -1.60 -32.27 16 8 C -0.24 -12.63 10.44 84.04 0.88 -11.75 16 9 H 0.06 3.44 8.06 -2.91 -0.02 3.42 16 10 C -0.05 -3.08 5.50 84.86 0.47 -2.61 16 11 N -0.98 -61.07 13.97 21.65 0.30 -60.76 16 12 Si 0.95 43.19 27.73 68.60 1.90 45.09 16 13 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 14 H -0.30 -14.06 7.11 99.48 0.71 -13.35 16 15 H -0.24 -9.63 6.52 99.48 0.65 -8.98 16 16 C 0.07 2.08 5.14 86.86 0.45 2.53 16 17 N -0.61 -17.32 3.08 -792.78 -2.44 -19.76 16 18 C 0.60 18.27 7.58 86.43 0.66 18.92 16 19 O -0.55 -18.63 15.86 -4.38 -0.07 -18.69 16 20 C -0.04 -0.98 6.84 40.36 0.28 -0.71 16 21 C -0.11 -2.52 10.61 22.50 0.24 -2.28 16 22 C -0.13 -2.82 10.79 22.43 0.24 -2.58 16 23 C 0.09 2.39 7.12 40.89 0.29 2.68 16 24 C 0.23 6.11 8.21 137.11 1.13 7.24 16 25 N -0.31 -9.67 12.54 -52.40 -0.66 -10.33 16 26 N -0.05 -1.40 13.46 37.02 0.50 -0.91 16 27 N -0.19 -3.20 7.90 37.02 0.29 -2.90 16 28 H 0.50 2.68 8.96 -347.51 -3.12 -0.43 16 29 N -0.27 -5.58 12.39 -52.35 -0.65 -6.23 16 30 N -0.52 -14.74 5.41 -172.29 -0.93 -15.67 16 31 H 0.43 12.82 5.18 -92.71 -0.48 12.34 16 32 H 0.05 1.26 8.14 -2.38 -0.02 1.24 16 33 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 34 H 0.06 1.47 6.82 -2.39 -0.02 1.45 16 35 H 0.10 2.28 7.83 -2.39 -0.02 2.26 16 36 H 0.09 2.03 8.01 -2.39 -0.02 2.02 16 37 H 0.37 14.71 5.63 -92.71 -0.52 14.19 16 38 H 0.26 15.41 8.31 -92.71 -0.77 14.64 16 39 H 0.06 2.08 5.53 -2.38 -0.01 2.07 16 40 H 0.08 2.33 8.11 -2.39 -0.02 2.32 16 41 H 0.17 3.39 8.06 -2.91 -0.02 3.37 16 42 H 0.18 2.77 8.06 -2.91 -0.02 2.75 16 Total: -1.00 -73.47 353.82 -0.61 -74.09 By element: Atomic # 1 Polarization: 36.34 SS G_CDS: -3.06 Total: 33.28 kcal Atomic # 6 Polarization: 9.27 SS G_CDS: 5.80 Total: 15.07 kcal Atomic # 7 Polarization: -143.65 SS G_CDS: -5.18 Total: -148.83 kcal Atomic # 8 Polarization: -18.63 SS G_CDS: -0.07 Total: -18.69 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 1.90 Total: 45.09 kcal Total: -73.47 -0.61 -74.09 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001603859236.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 217.952 kcal (2) G-P(sol) polarization free energy of solvation -73.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 144.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.087 kcal (6) G-S(sol) free energy of system = (1) + (5) 143.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds