Wall clock time and date at job start Tue Mar 31 2020 17:24:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.87006 * 2 1 4 4 C 1.54432 * 110.00816 * 238.91944 * 2 1 3 5 5 H 1.09005 * 110.72213 * 336.65680 * 4 2 1 6 6 N 1.46498 * 110.76312 * 99.96182 * 4 2 1 7 7 C 1.34779 * 119.99910 * 199.94081 * 6 4 2 8 8 O 1.21690 * 119.99877 * 0.02562 * 7 6 4 9 9 C 1.46714 * 119.99839 * 180.02562 * 7 6 4 10 10 C 1.36675 * 126.02358 * 179.71958 * 9 7 6 11 11 C 1.40807 * 107.05476 * 179.85273 * 10 9 7 12 12 C 1.48504 * 126.28488 * 180.13599 * 11 10 9 13 13 N 1.34035 * 126.67084 * 0.32206 * 12 11 10 14 14 N 1.28986 * 107.26998 * 179.97438 * 13 12 11 15 15 N 1.28740 * 108.93968 * 359.97438 * 14 13 12 16 16 H 0.96995 * 125.34489 * 180.02562 * 15 14 13 17 17 N 1.28871 * 109.31055 * 359.72761 * 15 14 13 18 18 C 1.36565 * 107.43140 * 0.40539 * 11 10 9 19 19 N 1.34843 * 108.61184 * 359.75196 * 18 11 10 20 20 H 0.97002 * 125.52502 * 180.02562 * 19 18 11 21 21 C 1.55158 * 102.89115 * 218.32064 * 4 2 1 22 22 C 1.54909 * 101.61642 * 35.49709 * 21 4 2 23 23 N 1.47014 * 109.88282 * 121.01752 * 2 1 3 24 24 C 1.36930 * 125.65274 * 298.48063 * 23 2 1 25 25 H 1.08002 * 119.99784 * 0.02562 * 24 23 2 26 26 C 1.38820 * 120.00266 * 180.02562 * 24 23 2 27 27 N 1.31614 * 119.99878 * 359.97438 * 26 24 23 28 28 Si 1.86796 * 119.99929 * 180.02562 * 26 24 23 29 29 H 1.48500 * 109.47699 * 89.99771 * 28 26 24 30 30 H 1.48506 * 109.46953 * 209.99990 * 28 26 24 31 31 H 1.48506 * 109.47233 * 329.99514 * 28 26 24 32 32 H 1.09000 * 109.47092 * 300.43187 * 1 2 3 33 33 H 1.09007 * 109.47223 * 60.43675 * 1 2 3 34 34 H 1.09005 * 109.46875 * 180.43199 * 1 2 3 35 35 H 0.97002 * 119.99842 * 19.94113 * 6 4 2 36 36 H 1.08001 * 126.47279 * 359.97438 * 10 9 7 37 37 H 1.07999 * 125.69266 * 179.74741 * 18 11 10 38 38 H 1.09002 * 111.00366 * 277.40227 * 21 4 2 39 39 H 1.09002 * 111.00429 * 153.59289 * 21 4 2 40 40 H 1.09001 * 110.36668 * 81.81066 * 22 21 4 41 41 H 1.09004 * 110.36307 * 204.13193 * 22 21 4 42 42 H 0.96997 * 119.99856 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0584 -0.7491 -1.2428 5 1 1.3108 -1.4475 -1.6189 6 7 2.4588 0.1963 -2.2878 7 6 2.5624 -0.2168 -3.5665 8 8 2.3228 -1.3750 -3.8531 9 6 2.9639 0.7299 -4.6130 10 6 3.1125 0.4444 -5.9413 11 6 3.5031 1.6374 -6.5790 12 6 3.7784 1.8099 -8.0281 13 7 3.6974 0.8660 -8.9762 14 7 4.0139 1.4207 -10.0968 15 7 4.2859 2.6614 -9.8868 16 1 4.5520 3.3004 -10.5664 17 7 4.1431 2.9227 -8.6330 18 6 3.5882 2.6053 -5.6194 19 7 3.2631 2.0612 -4.4292 20 1 3.2428 2.5315 -3.5811 21 6 3.2919 -1.5106 -0.6895 22 6 2.8176 -1.8763 0.7392 23 7 2.0300 -0.7124 1.1848 24 6 1.8025 -0.3540 2.4867 25 1 1.2095 0.5205 2.7102 26 6 2.3341 -1.1147 3.5191 27 7 3.0563 -2.1807 3.2467 28 14 2.0231 -0.6261 5.2950 29 1 0.7840 -1.2852 5.7801 30 1 3.1717 -1.0525 6.1341 31 1 1.8664 0.8481 5.3827 32 1 -0.3633 0.5205 0.8861 33 1 -0.3634 0.5071 -0.8939 34 1 -0.3633 -1.0277 0.0077 35 1 2.6494 1.1196 -2.0594 36 1 2.9574 -0.5147 -6.4130 37 1 3.8690 3.6348 -5.7859 38 1 4.1682 -0.8633 -0.6566 39 1 3.4929 -2.4072 -1.2759 40 1 2.1937 -2.7697 0.7148 41 1 3.6743 -2.0285 1.3958 42 1 3.4281 -2.7119 3.9680 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001605428785.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:24:06 Heat of formation + Delta-G solvation = 164.028875 kcal Electronic energy + Delta-G solvation = -27135.376361 eV Core-core repulsion = 23155.243912 eV Total energy + Delta-G solvation = -3980.132449 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.150 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -44.60787 -41.70502 -39.34887 -37.48923 -34.63897 -34.18669 -33.73177 -32.12555 -31.11660 -30.45540 -29.77440 -28.47302 -25.20299 -24.92194 -24.16274 -24.03578 -22.57102 -20.62010 -20.45447 -20.15316 -20.03541 -19.25039 -18.39112 -17.31316 -16.84180 -16.15740 -15.70850 -15.24851 -15.05145 -14.77353 -14.15564 -14.12685 -13.92446 -13.82767 -13.58204 -13.29386 -12.86123 -12.78193 -12.33638 -12.17863 -12.03258 -11.62536 -11.61424 -11.33201 -11.29293 -11.18409 -10.90866 -10.88468 -10.59184 -10.49981 -10.13266 -9.95689 -9.79922 -9.60771 -9.15692 -8.82358 -8.69138 -8.47247 -6.92451 -5.69641 -3.12915 0.80537 1.24228 1.47663 2.02730 2.67931 2.83162 3.15027 3.36460 3.38354 3.41479 3.43458 3.67864 4.01159 4.43947 4.69998 4.74434 5.06845 5.08141 5.24479 5.29034 5.37218 5.48256 5.57898 5.62190 5.76500 5.82418 6.05571 6.14725 6.18140 6.24094 6.26160 6.29369 6.44159 6.47984 6.55904 6.68720 6.80783 6.93140 7.04836 7.47866 7.57943 7.59667 7.81437 7.98602 8.24342 8.31362 9.16066 9.76931 10.40477 11.33533 Molecular weight = 331.15amu Principal moments of inertia in cm(-1) A = 0.035456 B = 0.002037 C = 0.002005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.530074 B =13745.020298 C =13963.119495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.156 3.844 3 H 0.033 0.967 4 C 0.136 3.864 5 H 0.095 0.905 6 N -0.715 5.715 7 C 0.586 3.414 8 O -0.523 6.523 9 C -0.042 4.042 10 C -0.064 4.064 11 C -0.122 4.122 12 C 0.264 3.736 13 N -0.269 5.269 14 N -0.053 5.053 15 N -0.233 5.233 16 H 0.473 0.527 17 N -0.309 5.309 18 C 0.080 3.920 19 N -0.529 5.529 20 H 0.425 0.575 21 C -0.153 4.153 22 C 0.152 3.848 23 N -0.595 5.595 24 C -0.222 4.222 25 H 0.077 0.923 26 C -0.010 4.010 27 N -0.920 5.920 28 Si 0.914 3.086 29 H -0.289 1.289 30 H -0.290 1.290 31 H -0.282 1.282 32 H 0.054 0.946 33 H 0.038 0.962 34 H 0.053 0.947 35 H 0.391 0.609 36 H 0.160 0.840 37 H 0.183 0.817 38 H 0.061 0.939 39 H 0.064 0.936 40 H 0.016 0.984 41 H 0.110 0.890 42 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.663 13.668 -21.791 25.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.048 3.952 3 H 0.051 0.949 4 C 0.032 3.968 5 H 0.113 0.887 6 N -0.364 5.364 7 C 0.372 3.628 8 O -0.399 6.399 9 C -0.154 4.154 10 C -0.091 4.091 11 C -0.132 4.132 12 C -0.015 4.015 13 N -0.142 5.142 14 N -0.048 5.048 15 N -0.079 5.079 16 H 0.327 0.673 17 N -0.161 5.161 18 C -0.063 4.063 19 N -0.124 5.124 20 H 0.263 0.737 21 C -0.192 4.192 22 C 0.027 3.973 23 N -0.320 5.320 24 C -0.350 4.350 25 H 0.095 0.905 26 C -0.206 4.206 27 N -0.568 5.568 28 Si 0.745 3.255 29 H -0.216 1.216 30 H -0.217 1.217 31 H -0.207 1.207 32 H 0.074 0.926 33 H 0.057 0.943 34 H 0.072 0.928 35 H 0.224 0.776 36 H 0.178 0.822 37 H 0.200 0.800 38 H 0.080 0.920 39 H 0.083 0.917 40 H 0.034 0.966 41 H 0.127 0.873 42 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 2.557 12.529 -22.182 25.603 hybrid contribution 0.022 1.577 1.358 2.081 sum 2.579 14.105 -20.824 25.283 Atomic orbital electron populations 1.22254 0.97800 1.01563 0.99959 1.20990 0.92638 0.94629 0.86942 0.94911 1.22217 0.97825 0.90668 0.86078 0.88685 1.45961 1.69643 1.13685 1.07152 1.16957 0.77746 0.86782 0.81314 1.90868 1.50004 1.17312 1.81722 1.20274 1.15105 0.84030 0.95948 1.21021 0.99132 0.98374 0.90589 1.16336 1.15789 0.95325 0.85795 1.22804 0.98816 0.84713 0.95213 1.76136 1.17947 1.25686 0.94418 1.78930 1.12844 0.92561 1.20485 1.47668 1.43925 1.09472 1.06787 0.67301 1.74890 1.22795 1.26056 0.92334 1.21846 1.01834 0.99051 0.83538 1.41863 1.51679 1.09127 1.09772 0.73695 1.23406 0.96569 0.99501 0.99761 1.21971 0.97375 0.88419 0.89543 1.44483 1.59078 1.28419 1.00007 1.19003 1.27178 1.08355 0.80480 0.90474 1.24800 1.00296 0.97392 0.98086 1.69789 1.38834 1.17924 1.30209 0.86082 0.77288 0.77687 0.84452 1.21611 1.21660 1.20749 0.92649 0.94339 0.92800 0.77574 0.82229 0.80018 0.92045 0.91724 0.96628 0.87273 0.93633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.77 9.15 37.16 0.34 -2.43 16 2 C 0.16 2.97 3.47 -66.90 -0.23 2.74 16 3 H 0.03 0.60 7.69 -51.93 -0.40 0.20 16 4 C 0.14 2.36 2.77 -66.04 -0.18 2.18 16 5 H 0.10 1.78 7.42 -51.93 -0.39 1.40 16 6 N -0.71 -9.67 5.20 -53.27 -0.28 -9.95 16 7 C 0.59 8.49 7.79 -12.84 -0.10 8.39 16 8 O -0.52 -9.64 16.60 5.20 0.09 -9.56 16 9 C -0.04 -0.48 7.00 -82.38 -0.58 -1.05 16 10 C -0.06 -0.77 10.56 -39.18 -0.41 -1.18 16 11 C -0.12 -1.25 6.10 -105.30 -0.64 -1.90 16 12 C 0.26 2.85 8.18 -156.31 -1.28 1.57 16 13 N -0.27 -3.23 12.54 32.16 0.40 -2.83 16 14 N -0.05 -0.51 13.47 60.35 0.81 0.30 16 15 N -0.23 -1.52 7.90 60.35 0.48 -1.05 16 16 H 0.47 0.73 8.96 -340.37 -3.05 -2.32 16 17 N -0.31 -2.67 12.39 32.18 0.40 -2.27 16 18 C 0.08 0.59 11.84 -16.83 -0.20 0.39 16 19 N -0.53 -3.95 5.95 -9.55 -0.06 -4.01 16 20 H 0.42 1.92 8.16 -40.82 -0.33 1.59 16 21 C -0.15 -2.94 6.76 -24.58 -0.17 -3.11 16 22 C 0.15 3.61 5.89 -2.53 -0.01 3.60 16 23 N -0.59 -14.32 3.13 -162.51 -0.51 -14.83 16 24 C -0.22 -5.87 9.87 -15.06 -0.15 -6.02 16 25 H 0.08 1.97 7.83 -52.49 -0.41 1.56 16 26 C -0.01 -0.27 5.49 -17.43 -0.10 -0.37 16 27 N -0.92 -26.15 10.09 55.49 0.56 -25.59 16 28 Si 0.91 21.48 29.55 -169.99 -5.02 16.46 16 29 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 30 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 31 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 32 H 0.05 1.02 8.02 -51.93 -0.42 0.60 16 33 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.39 4.07 7.42 -40.82 -0.30 3.76 16 36 H 0.16 2.01 8.06 -52.49 -0.42 1.58 16 37 H 0.18 0.76 8.06 -52.49 -0.42 0.34 16 38 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 39 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 40 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.11 2.92 5.87 -51.93 -0.30 2.61 16 42 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 LS Contribution 359.49 15.07 5.42 5.42 Total: -1.00 -34.71 359.49 -9.12 -43.83 By element: Atomic # 1 Polarization: 8.97 SS G_CDS: -7.70 Total: 1.27 kcal Atomic # 6 Polarization: 6.52 SS G_CDS: -3.71 Total: 2.81 kcal Atomic # 7 Polarization: -62.03 SS G_CDS: 1.81 Total: -60.23 kcal Atomic # 8 Polarization: -9.64 SS G_CDS: 0.09 Total: -9.56 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -34.71 -9.12 -43.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605428785.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 207.856 kcal (2) G-P(sol) polarization free energy of solvation -34.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 173.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.827 kcal (6) G-S(sol) free energy of system = (1) + (5) 164.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds