Wall clock time and date at job start Tue Mar 31 2020 17:24:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.87006 * 2 1 4 4 C 1.54432 * 110.00816 * 238.91944 * 2 1 3 5 5 H 1.09005 * 110.72213 * 336.65680 * 4 2 1 6 6 N 1.46498 * 110.76312 * 99.96182 * 4 2 1 7 7 C 1.34779 * 119.99910 * 199.94081 * 6 4 2 8 8 O 1.21690 * 119.99877 * 0.02562 * 7 6 4 9 9 C 1.46714 * 119.99839 * 180.02562 * 7 6 4 10 10 C 1.36675 * 126.02358 * 179.71958 * 9 7 6 11 11 C 1.40807 * 107.05476 * 179.85273 * 10 9 7 12 12 C 1.48504 * 126.28488 * 180.13599 * 11 10 9 13 13 N 1.34035 * 126.67084 * 0.32206 * 12 11 10 14 14 N 1.28986 * 107.26998 * 179.97438 * 13 12 11 15 15 N 1.28740 * 108.93968 * 359.97438 * 14 13 12 16 16 H 0.96995 * 125.34489 * 180.02562 * 15 14 13 17 17 N 1.28871 * 109.31055 * 359.72761 * 15 14 13 18 18 C 1.36565 * 107.43140 * 0.40539 * 11 10 9 19 19 N 1.34843 * 108.61184 * 359.75196 * 18 11 10 20 20 H 0.97002 * 125.52502 * 180.02562 * 19 18 11 21 21 C 1.55158 * 102.89115 * 218.32064 * 4 2 1 22 22 C 1.54909 * 101.61642 * 35.49709 * 21 4 2 23 23 N 1.47014 * 109.88282 * 121.01752 * 2 1 3 24 24 C 1.36930 * 125.65274 * 298.48063 * 23 2 1 25 25 H 1.08002 * 119.99784 * 0.02562 * 24 23 2 26 26 C 1.38820 * 120.00266 * 180.02562 * 24 23 2 27 27 N 1.31614 * 119.99878 * 359.97438 * 26 24 23 28 28 Si 1.86796 * 119.99929 * 180.02562 * 26 24 23 29 29 H 1.48500 * 109.47699 * 89.99771 * 28 26 24 30 30 H 1.48506 * 109.46953 * 209.99990 * 28 26 24 31 31 H 1.48506 * 109.47233 * 329.99514 * 28 26 24 32 32 H 1.09000 * 109.47092 * 300.43187 * 1 2 3 33 33 H 1.09007 * 109.47223 * 60.43675 * 1 2 3 34 34 H 1.09005 * 109.46875 * 180.43199 * 1 2 3 35 35 H 0.97002 * 119.99842 * 19.94113 * 6 4 2 36 36 H 1.08001 * 126.47279 * 359.97438 * 10 9 7 37 37 H 1.07999 * 125.69266 * 179.74741 * 18 11 10 38 38 H 1.09002 * 111.00366 * 277.40227 * 21 4 2 39 39 H 1.09002 * 111.00429 * 153.59289 * 21 4 2 40 40 H 1.09001 * 110.36668 * 81.81066 * 22 21 4 41 41 H 1.09004 * 110.36307 * 204.13193 * 22 21 4 42 42 H 0.96997 * 119.99856 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0584 -0.7491 -1.2428 5 1 1.3108 -1.4475 -1.6189 6 7 2.4588 0.1963 -2.2878 7 6 2.5624 -0.2168 -3.5665 8 8 2.3228 -1.3750 -3.8531 9 6 2.9639 0.7299 -4.6130 10 6 3.1125 0.4444 -5.9413 11 6 3.5031 1.6374 -6.5790 12 6 3.7784 1.8099 -8.0281 13 7 3.6974 0.8660 -8.9762 14 7 4.0139 1.4207 -10.0968 15 7 4.2859 2.6614 -9.8868 16 1 4.5520 3.3004 -10.5664 17 7 4.1431 2.9227 -8.6330 18 6 3.5882 2.6053 -5.6194 19 7 3.2631 2.0612 -4.4292 20 1 3.2428 2.5315 -3.5811 21 6 3.2919 -1.5106 -0.6895 22 6 2.8176 -1.8763 0.7392 23 7 2.0300 -0.7124 1.1848 24 6 1.8025 -0.3540 2.4867 25 1 1.2095 0.5205 2.7102 26 6 2.3341 -1.1147 3.5191 27 7 3.0563 -2.1807 3.2467 28 14 2.0231 -0.6261 5.2950 29 1 0.7840 -1.2852 5.7801 30 1 3.1717 -1.0525 6.1341 31 1 1.8664 0.8481 5.3827 32 1 -0.3633 0.5205 0.8861 33 1 -0.3634 0.5071 -0.8939 34 1 -0.3633 -1.0277 0.0077 35 1 2.6494 1.1196 -2.0594 36 1 2.9574 -0.5147 -6.4130 37 1 3.8690 3.6348 -5.7859 38 1 4.1682 -0.8633 -0.6566 39 1 3.4929 -2.4072 -1.2759 40 1 2.1937 -2.7697 0.7148 41 1 3.6743 -2.0285 1.3958 42 1 3.4281 -2.7119 3.9680 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001605428785.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:24:05 Heat of formation + Delta-G solvation = 137.534798 kcal Electronic energy + Delta-G solvation = -27136.525231 eV Core-core repulsion = 23155.243912 eV Total energy + Delta-G solvation = -3981.281318 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.150 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -45.29854 -42.50109 -40.63297 -39.01793 -35.70559 -35.29676 -34.51729 -33.83813 -32.06858 -31.87840 -30.97765 -29.93143 -26.69534 -25.84938 -25.61107 -24.97250 -23.67200 -22.02514 -21.62061 -21.26314 -21.07331 -20.16209 -19.32116 -18.68535 -17.99849 -17.51050 -16.77994 -16.57396 -16.26262 -15.84109 -15.75105 -15.40819 -14.97425 -14.89042 -14.69157 -14.39660 -14.27243 -13.98795 -13.71197 -13.53475 -13.22525 -13.03515 -12.91696 -12.75564 -12.60038 -12.33330 -12.22812 -12.11619 -12.02884 -12.02057 -11.96328 -11.56209 -11.45747 -11.20839 -10.72133 -10.15862 -9.90103 -9.25540 -8.88690 -7.73360 -5.18356 0.14067 0.42542 0.65199 1.49399 1.50967 1.55635 1.59172 1.93744 2.03111 2.08847 2.36863 2.53101 2.93725 3.29477 3.37232 3.57080 3.84129 3.86793 3.96657 4.21567 4.22112 4.29730 4.35825 4.50885 4.57434 4.63174 4.66997 4.82497 4.88411 4.96093 5.02372 5.05507 5.12957 5.35676 5.45366 5.51829 5.57223 5.61698 5.67314 5.74488 5.82051 6.32011 6.35970 6.54690 7.12344 7.14001 7.27917 7.80407 8.43827 9.28461 Molecular weight = 331.15amu Principal moments of inertia in cm(-1) A = 0.035456 B = 0.002037 C = 0.002005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.530074 B =13745.020298 C =13963.119495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.153 3.847 3 H 0.057 0.943 4 C 0.154 3.846 5 H 0.081 0.919 6 N -0.700 5.700 7 C 0.590 3.410 8 O -0.570 6.570 9 C -0.057 4.057 10 C -0.075 4.075 11 C -0.146 4.146 12 C 0.252 3.748 13 N -0.309 5.309 14 N -0.064 5.064 15 N -0.203 5.203 16 H 0.493 0.507 17 N -0.298 5.298 18 C 0.120 3.880 19 N -0.509 5.509 20 H 0.442 0.558 21 C -0.139 4.139 22 C 0.156 3.844 23 N -0.613 5.613 24 C -0.224 4.224 25 H 0.087 0.913 26 C -0.071 4.071 27 N -0.951 5.951 28 Si 0.978 3.022 29 H -0.292 1.292 30 H -0.298 1.298 31 H -0.265 1.265 32 H 0.048 0.952 33 H 0.072 0.928 34 H 0.034 0.966 35 H 0.410 0.590 36 H 0.140 0.860 37 H 0.225 0.775 38 H 0.071 0.929 39 H 0.064 0.936 40 H -0.016 1.016 41 H 0.078 0.922 42 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.753 17.668 -22.869 29.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.046 3.954 3 H 0.075 0.925 4 C 0.048 3.952 5 H 0.099 0.901 6 N -0.351 5.351 7 C 0.378 3.622 8 O -0.449 6.449 9 C -0.168 4.168 10 C -0.103 4.103 11 C -0.156 4.156 12 C -0.028 4.028 13 N -0.181 5.181 14 N -0.059 5.059 15 N -0.054 5.054 16 H 0.352 0.648 17 N -0.151 5.151 18 C -0.024 4.024 19 N -0.106 5.106 20 H 0.284 0.716 21 C -0.178 4.178 22 C 0.031 3.969 23 N -0.338 5.338 24 C -0.353 4.353 25 H 0.105 0.895 26 C -0.263 4.263 27 N -0.601 5.601 28 Si 0.806 3.194 29 H -0.219 1.219 30 H -0.225 1.225 31 H -0.190 1.190 32 H 0.067 0.933 33 H 0.091 0.909 34 H 0.053 0.947 35 H 0.247 0.753 36 H 0.157 0.843 37 H 0.241 0.759 38 H 0.090 0.910 39 H 0.082 0.918 40 H 0.002 0.998 41 H 0.096 0.904 42 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 2.637 16.607 -23.284 28.721 hybrid contribution 0.013 0.435 1.538 1.598 sum 2.649 17.042 -21.746 27.755 Atomic orbital electron populations 1.22150 0.96520 1.00767 1.01343 1.21206 0.93488 0.95176 0.85549 0.92527 1.21759 0.96237 0.90794 0.86381 0.90117 1.45637 1.69348 1.13992 1.06100 1.17270 0.76632 0.86608 0.81677 1.90850 1.52073 1.19563 1.82432 1.19602 1.17314 0.85358 0.94570 1.20988 0.99485 0.98578 0.91228 1.16442 1.17361 0.95463 0.86323 1.22936 0.99396 0.84998 0.95463 1.76119 1.19593 1.27083 0.95299 1.78869 1.13472 0.93560 1.20000 1.47748 1.41715 1.09114 1.06834 0.64826 1.74841 1.22409 1.25105 0.92778 1.22422 0.97975 0.99830 0.82182 1.41780 1.50469 1.07525 1.10854 0.71596 1.23197 0.97691 1.00055 0.96881 1.21679 0.95725 0.87866 0.91662 1.44715 1.59532 1.28713 1.00874 1.19390 1.26077 1.08148 0.81663 0.89475 1.25622 1.00953 0.97835 1.01931 1.70043 1.40285 1.19134 1.30639 0.85083 0.76379 0.78082 0.79807 1.21924 1.22460 1.18981 0.93253 0.90899 0.94706 0.75270 0.84261 0.75851 0.91038 0.91768 0.99790 0.90445 0.94518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.01 9.15 71.98 0.66 -4.35 16 2 C 0.15 5.56 3.47 45.38 0.16 5.72 16 3 H 0.06 1.85 7.69 -2.39 -0.02 1.83 16 4 C 0.15 5.19 2.77 46.22 0.13 5.32 16 5 H 0.08 3.02 7.42 -2.38 -0.02 3.01 16 6 N -0.70 -17.45 5.20 -440.65 -2.29 -19.74 16 7 C 0.59 16.47 7.79 86.46 0.67 17.14 16 8 O -0.57 -21.32 16.60 -4.32 -0.07 -21.39 16 9 C -0.06 -1.20 7.00 40.08 0.28 -0.92 16 10 C -0.08 -1.75 10.56 22.53 0.24 -1.51 16 11 C -0.15 -2.70 6.10 -20.30 -0.12 -2.83 16 12 C 0.25 5.03 8.18 137.40 1.12 6.16 16 13 N -0.31 -7.31 12.54 -52.16 -0.65 -7.97 16 14 N -0.06 -1.17 13.47 37.02 0.50 -0.68 16 15 N -0.20 -2.20 7.90 37.02 0.29 -1.91 16 16 H 0.49 0.19 8.96 -347.54 -3.12 -2.92 16 17 N -0.30 -4.35 12.39 -52.11 -0.65 -5.00 16 18 C 0.12 1.26 11.84 83.84 0.99 2.25 16 19 N -0.51 -5.68 5.95 -184.12 -1.09 -6.77 16 20 H 0.44 1.88 8.16 -92.71 -0.76 1.13 16 21 C -0.14 -5.36 6.76 31.99 0.22 -5.15 16 22 C 0.16 7.69 5.89 86.85 0.51 8.21 16 23 N -0.61 -29.58 3.13 -668.05 -2.09 -31.67 16 24 C -0.22 -11.80 9.87 84.04 0.83 -10.97 16 25 H 0.09 4.32 7.83 -2.91 -0.02 4.30 16 26 C -0.07 -3.92 5.49 84.86 0.47 -3.46 16 27 N -0.95 -55.97 10.09 21.65 0.22 -55.75 16 28 Si 0.98 44.49 29.55 68.60 2.03 46.52 16 29 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 30 H -0.30 -13.79 7.11 99.48 0.71 -13.08 16 31 H -0.27 -11.21 7.11 99.48 0.71 -10.51 16 32 H 0.05 1.71 8.02 -2.39 -0.02 1.69 16 33 H 0.07 1.95 8.14 -2.38 -0.02 1.93 16 34 H 0.03 1.29 8.14 -2.38 -0.02 1.27 16 35 H 0.41 7.06 7.42 -92.71 -0.69 6.37 16 36 H 0.14 3.73 8.06 -2.91 -0.02 3.71 16 37 H 0.23 0.49 8.06 -2.91 -0.02 0.47 16 38 H 0.07 2.62 8.14 -2.39 -0.02 2.60 16 39 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 40 H -0.02 -0.86 8.14 -2.39 -0.02 -0.88 16 41 H 0.08 4.33 5.87 -2.38 -0.01 4.32 16 42 H 0.25 14.14 8.31 -92.71 -0.77 13.37 16 Total: -1.00 -79.20 359.49 -1.10 -80.30 By element: Atomic # 1 Polarization: 11.90 SS G_CDS: -3.44 Total: 8.45 kcal Atomic # 6 Polarization: 9.46 SS G_CDS: 6.15 Total: 15.61 kcal Atomic # 7 Polarization: -123.73 SS G_CDS: -5.77 Total: -129.49 kcal Atomic # 8 Polarization: -21.32 SS G_CDS: -0.07 Total: -21.39 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.52 kcal Total: -79.20 -1.10 -80.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605428785.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 217.838 kcal (2) G-P(sol) polarization free energy of solvation -79.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 138.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.303 kcal (6) G-S(sol) free energy of system = (1) + (5) 137.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds