Wall clock time and date at job start Tue Mar 31 2020 17:24:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08996 * 109.87514 * 2 1 4 4 C 1.54315 * 109.88249 * 238.82121 * 2 1 3 5 5 H 1.09006 * 110.72427 * 336.75387 * 4 2 1 6 6 N 1.46501 * 110.72069 * 100.02814 * 4 2 1 7 7 C 1.34776 * 119.99741 * 204.99747 * 6 4 2 8 8 O 1.21622 * 120.00429 * 0.02562 * 7 6 4 9 9 C 1.47315 * 119.99696 * 179.97438 * 7 6 4 10 10 C 1.37822 * 126.52945 * 0.02786 * 9 7 6 11 11 N 1.34776 * 108.25342 * 179.97438 * 10 9 7 12 12 H 0.97008 * 125.36465 * 180.02562 * 11 10 9 13 13 C 1.37304 * 109.27122 * 0.02562 * 11 10 9 14 14 C 1.48007 * 125.76437 * 179.97438 * 13 11 10 15 15 N 1.34180 * 126.69669 * 180.02562 * 14 13 11 16 16 N 1.28983 * 107.25008 * 179.97438 * 15 14 13 17 17 N 1.28720 * 108.99075 * 0.02562 * 16 15 14 18 18 H 0.96993 * 125.32627 * 179.97438 * 17 16 15 19 19 N 1.28873 * 109.35428 * 359.74886 * 17 16 15 20 20 C 1.35700 * 108.47356 * 359.75648 * 13 11 10 21 21 C 1.55154 * 102.94105 * 218.39052 * 4 2 1 22 22 C 1.54910 * 101.58178 * 35.50273 * 21 4 2 23 23 N 1.47018 * 109.87796 * 121.01013 * 2 1 3 24 24 C 1.36938 * 125.65462 * 298.32427 * 23 2 1 25 25 H 1.07997 * 119.99764 * 359.97438 * 24 23 2 26 26 C 1.38808 * 120.00265 * 180.02562 * 24 23 2 27 27 N 1.31615 * 120.00453 * 359.97438 * 26 24 23 28 28 Si 1.86799 * 120.00023 * 180.02562 * 26 24 23 29 29 H 1.48499 * 109.47449 * 59.99317 * 28 26 24 30 30 H 1.48500 * 109.47406 * 179.97438 * 28 26 24 31 31 H 1.48510 * 109.46879 * 299.99364 * 28 26 24 32 32 H 1.08993 * 109.47070 * 300.44431 * 1 2 3 33 33 H 1.08997 * 109.46759 * 60.43961 * 1 2 3 34 34 H 1.09000 * 109.47239 * 180.43894 * 1 2 3 35 35 H 0.97001 * 120.00107 * 24.99829 * 6 4 2 36 36 H 1.08002 * 125.87352 * 359.93941 * 10 9 7 37 37 H 1.08001 * 126.47191 * 180.26782 * 20 13 11 38 38 H 1.08995 * 111.00870 * 277.42654 * 21 4 2 39 39 H 1.09002 * 111.00795 * 153.57376 * 21 4 2 40 40 H 1.09006 * 110.36540 * 204.14967 * 22 21 4 41 41 H 1.08998 * 110.36982 * 81.83274 * 22 21 4 42 42 H 0.96990 * 120.00685 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9006 1.0250 0.0000 4 6 2.0549 -0.7513 -1.2416 5 1 1.3051 -1.4483 -1.6162 6 7 2.4555 0.1928 -2.2877 7 6 2.4583 -0.1936 -3.5789 8 8 2.1277 -1.3257 -3.8757 9 6 2.8606 0.7559 -4.6309 10 6 3.2572 2.0632 -4.4482 11 7 3.5415 2.5908 -5.6554 12 1 3.8449 3.4984 -5.8141 13 6 3.3339 1.6412 -6.6252 14 6 3.5344 1.8315 -8.0792 15 7 3.3372 0.9182 -9.0422 16 7 3.6235 1.4805 -10.1671 17 7 3.9883 2.6952 -9.9473 18 1 4.2562 3.3322 -10.6280 19 7 3.9374 2.9342 -8.6820 20 6 2.9185 0.4972 -6.0250 21 6 3.2876 -1.5152 -0.6901 22 6 2.8145 -1.8783 0.7396 23 7 2.0300 -0.7123 1.1850 24 6 1.8049 -0.3520 2.4868 25 1 1.2148 0.5245 2.7102 26 6 2.3360 -1.1127 3.5193 27 7 3.0555 -2.1807 3.2471 28 14 2.0283 -0.6216 5.2951 29 1 0.5678 -0.6228 5.5632 30 1 2.6980 -1.5903 6.1998 31 1 2.5744 0.7386 5.5342 32 1 -0.3633 0.5207 0.8859 33 1 -0.3633 0.5070 -0.8939 34 1 -0.3634 -1.0276 0.0079 35 1 2.7189 1.0959 -2.0511 36 1 3.3275 2.5766 -3.5006 37 1 2.6763 -0.4338 -6.5157 38 1 4.1654 -0.8698 -0.6590 39 1 3.4852 -2.4129 -1.2759 40 1 3.6716 -2.0318 1.3953 41 1 2.1886 -2.7704 0.7170 42 1 3.4264 -2.7125 3.9685 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001605428794.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:24:10 Heat of formation + Delta-G solvation = 164.225009 kcal Electronic energy + Delta-G solvation = -27103.572532 eV Core-core repulsion = 23123.448588 eV Total energy + Delta-G solvation = -3980.123944 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.150 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -44.85043 -41.60457 -39.20517 -37.33977 -34.78946 -33.96219 -33.72498 -32.10572 -31.46583 -30.32527 -29.64006 -28.39214 -25.16657 -24.94993 -24.14361 -23.94669 -22.69497 -21.06858 -20.21378 -19.99931 -19.65827 -19.25696 -18.36153 -17.56712 -16.74927 -16.31965 -15.60760 -15.04040 -15.02688 -14.68627 -14.37447 -14.06039 -13.89153 -13.82308 -13.58197 -13.14127 -12.71401 -12.69236 -12.53034 -12.08405 -11.88586 -11.79969 -11.56203 -11.50224 -11.41009 -11.10152 -10.82436 -10.79970 -10.49594 -10.35698 -10.10202 -9.70210 -9.64500 -9.50717 -9.29699 -8.64241 -8.56860 -8.40279 -6.84223 -5.62547 -3.05452 0.53198 1.06038 1.68490 1.78706 2.49889 2.56296 3.26995 3.41071 3.45397 3.47008 3.62488 3.68597 3.94445 4.50530 4.66143 4.80861 4.82907 5.02733 5.13323 5.35076 5.45603 5.61324 5.64388 5.70150 5.81371 5.90537 5.92404 6.18030 6.29992 6.31969 6.38468 6.42930 6.45836 6.61850 6.68047 6.79598 6.91658 6.94066 7.19794 7.57077 7.65214 7.72630 7.87543 7.90024 8.38331 8.59028 9.23439 9.84488 10.48802 11.40476 Molecular weight = 331.15amu Principal moments of inertia in cm(-1) A = 0.035963 B = 0.002024 C = 0.001993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.401234 B =13829.631777 C =14044.046493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.155 3.845 3 H 0.035 0.965 4 C 0.137 3.863 5 H 0.095 0.905 6 N -0.713 5.713 7 C 0.586 3.414 8 O -0.542 6.542 9 C -0.217 4.217 10 C 0.072 3.928 11 N -0.525 5.525 12 H 0.424 0.576 13 C 0.052 3.948 14 C 0.256 3.744 15 N -0.256 5.256 16 N -0.044 5.044 17 N -0.227 5.227 18 H 0.476 0.524 19 N -0.311 5.311 20 C -0.058 4.058 21 C -0.153 4.153 22 C 0.152 3.848 23 N -0.595 5.595 24 C -0.220 4.220 25 H 0.077 0.923 26 C -0.011 4.011 27 N -0.921 5.921 28 Si 0.914 3.086 29 H -0.286 1.286 30 H -0.290 1.290 31 H -0.286 1.286 32 H 0.053 0.947 33 H 0.038 0.962 34 H 0.052 0.948 35 H 0.394 0.606 36 H 0.186 0.814 37 H 0.160 0.840 38 H 0.061 0.939 39 H 0.062 0.938 40 H 0.108 0.892 41 H 0.014 0.986 42 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.204 14.221 -23.442 27.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.047 3.953 3 H 0.052 0.948 4 C 0.032 3.968 5 H 0.113 0.887 6 N -0.363 5.363 7 C 0.373 3.627 8 O -0.420 6.420 9 C -0.227 4.227 10 C -0.068 4.068 11 N -0.119 5.119 12 H 0.262 0.738 13 C -0.061 4.061 14 C -0.024 4.024 15 N -0.129 5.129 16 N -0.039 5.039 17 N -0.073 5.073 18 H 0.330 0.670 19 N -0.164 5.164 20 C -0.086 4.086 21 C -0.193 4.193 22 C 0.027 3.973 23 N -0.321 5.321 24 C -0.348 4.348 25 H 0.094 0.906 26 C -0.207 4.207 27 N -0.569 5.569 28 Si 0.744 3.256 29 H -0.213 1.213 30 H -0.216 1.216 31 H -0.212 1.212 32 H 0.072 0.928 33 H 0.057 0.943 34 H 0.071 0.929 35 H 0.228 0.772 36 H 0.203 0.797 37 H 0.178 0.822 38 H 0.080 0.920 39 H 0.081 0.919 40 H 0.126 0.874 41 H 0.032 0.968 42 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 3.069 13.260 -24.122 27.697 hybrid contribution 0.246 1.774 0.969 2.036 sum 3.315 15.034 -23.153 27.804 Atomic orbital electron populations 1.22244 0.97955 1.01433 0.99878 1.20994 0.92565 0.94723 0.87014 0.94768 1.22131 0.97651 0.90834 0.86178 0.88713 1.45876 1.68541 1.15978 1.05929 1.17290 0.77256 0.86517 0.81653 1.90784 1.48660 1.20133 1.82396 1.19758 1.14230 0.94328 0.94345 1.22489 1.01062 0.94339 0.88955 1.41489 1.51612 1.13353 1.05457 0.73774 1.16367 1.16216 0.91212 0.82263 1.22514 0.99569 0.85952 0.94380 1.76209 1.18237 1.24798 0.93680 1.78971 1.11715 0.92922 1.20293 1.47626 1.42712 1.11056 1.05869 0.66997 1.74938 1.23456 1.25691 0.92293 1.21025 0.98639 0.96961 0.91930 1.23398 0.96800 0.99428 0.99652 1.21957 0.97332 0.88370 0.89644 1.44486 1.59263 1.28262 1.00039 1.18963 1.27142 1.08104 0.80591 0.90561 1.24786 1.00445 0.97432 0.97991 1.69783 1.39071 1.17814 1.30216 0.86173 0.77624 0.77365 0.84415 1.21270 1.21628 1.21249 0.92825 0.94284 0.92932 0.77197 0.79745 0.82197 0.92021 0.91950 0.87388 0.96764 0.93665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.87 9.14 37.16 0.34 -2.53 16 2 C 0.16 3.05 3.48 -66.96 -0.23 2.82 16 3 H 0.03 0.64 7.72 -51.93 -0.40 0.24 16 4 C 0.14 2.47 2.84 -66.10 -0.19 2.28 16 5 H 0.09 1.87 7.26 -51.93 -0.38 1.49 16 6 N -0.71 -10.20 5.17 -53.14 -0.27 -10.47 16 7 C 0.59 8.95 7.81 -12.57 -0.10 8.85 16 8 O -0.54 -10.53 16.57 5.26 0.09 -10.45 16 9 C -0.22 -2.55 6.14 -104.96 -0.64 -3.20 16 10 C 0.07 0.56 11.44 -16.41 -0.19 0.37 16 11 N -0.52 -3.69 6.01 -9.19 -0.06 -3.74 16 12 H 0.42 1.77 8.96 -40.82 -0.37 1.40 16 13 C 0.05 0.51 7.08 -82.32 -0.58 -0.07 16 14 C 0.26 2.54 8.20 -156.25 -1.28 1.26 16 15 N -0.26 -2.83 12.52 32.10 0.40 -2.43 16 16 N -0.04 -0.38 13.46 60.35 0.81 0.43 16 17 N -0.23 -1.26 7.90 60.35 0.48 -0.78 16 18 H 0.48 0.28 8.96 -340.34 -3.05 -2.77 16 19 N -0.31 -2.39 12.41 32.11 0.40 -2.00 16 20 C -0.06 -0.68 10.59 -39.09 -0.41 -1.09 16 21 C -0.15 -3.02 6.77 -24.58 -0.17 -3.19 16 22 C 0.15 3.68 5.89 -2.53 -0.01 3.67 16 23 N -0.60 -14.64 3.13 -162.58 -0.51 -15.14 16 24 C -0.22 -5.90 9.87 -15.06 -0.15 -6.05 16 25 H 0.08 1.97 7.83 -52.49 -0.41 1.56 16 26 C -0.01 -0.30 5.49 -17.43 -0.10 -0.40 16 27 N -0.92 -26.50 10.09 55.49 0.56 -25.94 16 28 Si 0.91 21.74 29.55 -169.99 -5.02 16.71 16 29 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 30 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 31 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 32 H 0.05 1.02 8.02 -51.93 -0.42 0.60 16 33 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 35 H 0.39 4.39 7.28 -40.82 -0.30 4.09 16 36 H 0.19 0.79 7.44 -52.49 -0.39 0.40 16 37 H 0.16 1.99 8.06 -52.49 -0.42 1.57 16 38 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 39 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 40 H 0.11 2.93 5.87 -51.93 -0.30 2.62 16 41 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 42 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 LS Contribution 359.31 15.07 5.41 5.41 Total: -1.00 -35.55 359.31 -9.11 -44.66 By element: Atomic # 1 Polarization: 8.71 SS G_CDS: -7.69 Total: 1.03 kcal Atomic # 6 Polarization: 6.42 SS G_CDS: -3.72 Total: 2.71 kcal Atomic # 7 Polarization: -61.89 SS G_CDS: 1.81 Total: -60.08 kcal Atomic # 8 Polarization: -10.53 SS G_CDS: 0.09 Total: -10.45 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -35.55 -9.11 -44.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605428794.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 208.884 kcal (2) G-P(sol) polarization free energy of solvation -35.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 173.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.659 kcal (6) G-S(sol) free energy of system = (1) + (5) 164.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds