Wall clock time and date at job start Tue Mar 31 2020 17:24:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08996 * 109.87514 * 2 1 4 4 C 1.54315 * 109.88249 * 238.82121 * 2 1 3 5 5 H 1.09006 * 110.72427 * 336.75387 * 4 2 1 6 6 N 1.46501 * 110.72069 * 100.02814 * 4 2 1 7 7 C 1.34776 * 119.99741 * 204.99747 * 6 4 2 8 8 O 1.21622 * 120.00429 * 0.02562 * 7 6 4 9 9 C 1.47315 * 119.99696 * 179.97438 * 7 6 4 10 10 C 1.37822 * 126.52945 * 0.02786 * 9 7 6 11 11 N 1.34776 * 108.25342 * 179.97438 * 10 9 7 12 12 H 0.97008 * 125.36465 * 180.02562 * 11 10 9 13 13 C 1.37304 * 109.27122 * 0.02562 * 11 10 9 14 14 C 1.48007 * 125.76437 * 179.97438 * 13 11 10 15 15 N 1.34180 * 126.69669 * 180.02562 * 14 13 11 16 16 N 1.28983 * 107.25008 * 179.97438 * 15 14 13 17 17 N 1.28720 * 108.99075 * 0.02562 * 16 15 14 18 18 H 0.96993 * 125.32627 * 179.97438 * 17 16 15 19 19 N 1.28873 * 109.35428 * 359.74886 * 17 16 15 20 20 C 1.35700 * 108.47356 * 359.75648 * 13 11 10 21 21 C 1.55154 * 102.94105 * 218.39052 * 4 2 1 22 22 C 1.54910 * 101.58178 * 35.50273 * 21 4 2 23 23 N 1.47018 * 109.87796 * 121.01013 * 2 1 3 24 24 C 1.36938 * 125.65462 * 298.32427 * 23 2 1 25 25 H 1.07997 * 119.99764 * 359.97438 * 24 23 2 26 26 C 1.38808 * 120.00265 * 180.02562 * 24 23 2 27 27 N 1.31615 * 120.00453 * 359.97438 * 26 24 23 28 28 Si 1.86799 * 120.00023 * 180.02562 * 26 24 23 29 29 H 1.48499 * 109.47449 * 59.99317 * 28 26 24 30 30 H 1.48500 * 109.47406 * 179.97438 * 28 26 24 31 31 H 1.48510 * 109.46879 * 299.99364 * 28 26 24 32 32 H 1.08993 * 109.47070 * 300.44431 * 1 2 3 33 33 H 1.08997 * 109.46759 * 60.43961 * 1 2 3 34 34 H 1.09000 * 109.47239 * 180.43894 * 1 2 3 35 35 H 0.97001 * 120.00107 * 24.99829 * 6 4 2 36 36 H 1.08002 * 125.87352 * 359.93941 * 10 9 7 37 37 H 1.08001 * 126.47191 * 180.26782 * 20 13 11 38 38 H 1.08995 * 111.00870 * 277.42654 * 21 4 2 39 39 H 1.09002 * 111.00795 * 153.57376 * 21 4 2 40 40 H 1.09006 * 110.36540 * 204.14967 * 22 21 4 41 41 H 1.08998 * 110.36982 * 81.83274 * 22 21 4 42 42 H 0.96990 * 120.00685 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9006 1.0250 0.0000 4 6 2.0549 -0.7513 -1.2416 5 1 1.3051 -1.4483 -1.6162 6 7 2.4555 0.1928 -2.2877 7 6 2.4583 -0.1936 -3.5789 8 8 2.1277 -1.3257 -3.8757 9 6 2.8606 0.7559 -4.6309 10 6 3.2572 2.0632 -4.4482 11 7 3.5415 2.5908 -5.6554 12 1 3.8449 3.4984 -5.8141 13 6 3.3339 1.6412 -6.6252 14 6 3.5344 1.8315 -8.0792 15 7 3.3372 0.9182 -9.0422 16 7 3.6235 1.4805 -10.1671 17 7 3.9883 2.6952 -9.9473 18 1 4.2562 3.3322 -10.6280 19 7 3.9374 2.9342 -8.6820 20 6 2.9185 0.4972 -6.0250 21 6 3.2876 -1.5152 -0.6901 22 6 2.8145 -1.8783 0.7396 23 7 2.0300 -0.7123 1.1850 24 6 1.8049 -0.3520 2.4868 25 1 1.2148 0.5245 2.7102 26 6 2.3360 -1.1127 3.5193 27 7 3.0555 -2.1807 3.2471 28 14 2.0283 -0.6216 5.2951 29 1 0.5678 -0.6228 5.5632 30 1 2.6980 -1.5903 6.1998 31 1 2.5744 0.7386 5.5342 32 1 -0.3633 0.5207 0.8859 33 1 -0.3633 0.5070 -0.8939 34 1 -0.3634 -1.0276 0.0079 35 1 2.7189 1.0959 -2.0511 36 1 3.3275 2.5766 -3.5006 37 1 2.6763 -0.4338 -6.5157 38 1 4.1654 -0.8698 -0.6590 39 1 3.4852 -2.4129 -1.2759 40 1 3.6716 -2.0318 1.3953 41 1 2.1886 -2.7704 0.7170 42 1 3.4264 -2.7125 3.9685 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001605428794.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:24:09 Heat of formation + Delta-G solvation = 136.726779 kcal Electronic energy + Delta-G solvation = -27104.764945 eV Core-core repulsion = 23123.448588 eV Total energy + Delta-G solvation = -3981.316357 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.150 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -45.49393 -42.36642 -40.54974 -38.90716 -35.52473 -35.42339 -34.45089 -33.78280 -32.37434 -31.96307 -30.75459 -29.86359 -26.64292 -25.79624 -25.63241 -24.92596 -23.79892 -22.00108 -21.75412 -21.43698 -20.44789 -20.30078 -19.14374 -18.63472 -18.20230 -17.53157 -17.01179 -16.51066 -15.99826 -15.72524 -15.65167 -15.38831 -15.08708 -15.01337 -14.69991 -14.37542 -14.16732 -13.92261 -13.63389 -13.34391 -13.31693 -13.14355 -12.87915 -12.67032 -12.54023 -12.46895 -12.24100 -12.17391 -12.05951 -12.02870 -11.96851 -11.50778 -11.36102 -10.93660 -10.66788 -10.16727 -9.84156 -9.19175 -8.83598 -7.68953 -5.13830 -0.09711 0.35729 0.81113 1.34827 1.51531 1.54509 1.60506 1.78207 1.87419 2.24314 2.56531 2.62203 2.77679 3.29614 3.41100 3.66250 3.94260 3.95075 4.05270 4.09086 4.18233 4.30224 4.34711 4.38864 4.58278 4.70381 4.73474 4.82824 4.90738 5.01106 5.06649 5.15002 5.22628 5.44554 5.47993 5.56371 5.57245 5.66831 5.67423 5.74586 5.86787 6.36568 6.40522 6.77930 7.07008 7.16694 7.44718 7.85200 8.49176 9.32613 Molecular weight = 331.15amu Principal moments of inertia in cm(-1) A = 0.035963 B = 0.002024 C = 0.001993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.401234 B =13829.631777 C =14044.046493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.152 3.848 3 H 0.060 0.940 4 C 0.154 3.846 5 H 0.076 0.924 6 N -0.698 5.698 7 C 0.588 3.412 8 O -0.594 6.594 9 C -0.251 4.251 10 C 0.114 3.886 11 N -0.504 5.504 12 H 0.442 0.558 13 C 0.053 3.947 14 C 0.241 3.759 15 N -0.292 5.292 16 N -0.053 5.053 17 N -0.196 5.196 18 H 0.496 0.504 19 N -0.298 5.298 20 C -0.081 4.081 21 C -0.139 4.139 22 C 0.156 3.844 23 N -0.613 5.613 24 C -0.223 4.223 25 H 0.087 0.913 26 C -0.072 4.072 27 N -0.952 5.952 28 Si 0.978 3.022 29 H -0.281 1.281 30 H -0.300 1.300 31 H -0.274 1.274 32 H 0.047 0.953 33 H 0.071 0.929 34 H 0.031 0.969 35 H 0.414 0.586 36 H 0.231 0.769 37 H 0.139 0.861 38 H 0.074 0.926 39 H 0.061 0.939 40 H 0.078 0.922 41 H -0.019 1.019 42 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.550 18.307 -24.381 30.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.045 3.955 3 H 0.077 0.923 4 C 0.048 3.952 5 H 0.094 0.906 6 N -0.349 5.349 7 C 0.378 3.622 8 O -0.475 6.475 9 C -0.261 4.261 10 C -0.029 4.029 11 N -0.100 5.100 12 H 0.284 0.716 13 C -0.059 4.059 14 C -0.039 4.039 15 N -0.165 5.165 16 N -0.048 5.048 17 N -0.047 5.047 18 H 0.355 0.645 19 N -0.152 5.152 20 C -0.109 4.109 21 C -0.178 4.178 22 C 0.031 3.969 23 N -0.339 5.339 24 C -0.352 4.352 25 H 0.105 0.895 26 C -0.264 4.264 27 N -0.602 5.602 28 Si 0.807 3.193 29 H -0.208 1.208 30 H -0.226 1.226 31 H -0.199 1.199 32 H 0.067 0.933 33 H 0.090 0.910 34 H 0.050 0.950 35 H 0.252 0.748 36 H 0.247 0.753 37 H 0.157 0.843 38 H 0.093 0.907 39 H 0.080 0.920 40 H 0.096 0.904 41 H -0.001 1.001 42 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 3.418 17.444 -25.124 30.777 hybrid contribution 0.154 0.601 1.111 1.273 sum 3.572 18.045 -24.013 30.249 Atomic orbital electron populations 1.22142 0.96831 1.00538 1.01212 1.21208 0.93308 0.95333 0.85623 0.92263 1.21667 0.96079 0.90961 0.86529 0.90598 1.45565 1.68306 1.16207 1.04846 1.17742 0.75992 0.86336 0.82136 1.90761 1.51041 1.22605 1.83111 1.19412 1.17861 0.95743 0.93078 1.23001 0.97009 0.92490 0.90355 1.41477 1.50190 1.13693 1.04604 0.71568 1.16219 1.15792 0.91184 0.82751 1.22554 1.00492 0.86367 0.94451 1.76197 1.19637 1.26118 0.94508 1.78921 1.12309 0.93855 1.19708 1.47720 1.40446 1.10660 1.05885 0.64481 1.74900 1.22767 1.24688 0.92809 1.20931 1.00148 0.97264 0.92538 1.23200 0.97934 0.99991 0.96710 1.21673 0.95678 0.87763 0.91799 1.44725 1.59696 1.28540 1.00897 1.19361 1.26152 1.07968 0.81745 0.89525 1.25618 1.01054 0.97840 1.01909 1.70041 1.40477 1.19010 1.30654 0.85155 0.77394 0.77129 0.79655 1.20785 1.22614 1.19945 0.93345 0.91009 0.94968 0.74819 0.75304 0.84334 0.90730 0.92041 0.90449 1.00075 0.94570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.22 9.14 71.98 0.66 -4.56 16 2 C 0.15 5.72 3.48 45.34 0.16 5.88 16 3 H 0.06 1.99 7.72 -2.39 -0.02 1.97 16 4 C 0.15 5.41 2.84 46.18 0.13 5.55 16 5 H 0.08 3.02 7.26 -2.38 -0.02 3.00 16 6 N -0.70 -18.35 5.17 -440.28 -2.27 -20.62 16 7 C 0.59 17.40 7.81 86.63 0.68 18.08 16 8 O -0.59 -23.64 16.57 -4.10 -0.07 -23.71 16 9 C -0.25 -5.48 6.14 -20.08 -0.12 -5.61 16 10 C 0.11 1.28 11.44 84.14 0.96 2.24 16 11 N -0.50 -5.17 6.01 -183.00 -1.10 -6.27 16 12 H 0.44 1.61 8.96 -92.70 -0.83 0.78 16 13 C 0.05 0.96 7.08 40.29 0.29 1.24 16 14 C 0.24 4.45 8.20 137.15 1.13 5.57 16 15 N -0.29 -6.35 12.52 -52.37 -0.66 -7.01 16 16 N -0.05 -0.86 13.46 37.02 0.50 -0.36 16 17 N -0.20 -1.74 7.90 37.02 0.29 -1.44 16 18 H 0.50 -0.77 8.96 -347.52 -3.11 -3.89 16 19 N -0.30 -3.84 12.41 -52.32 -0.65 -4.48 16 20 C -0.08 -1.90 10.59 22.59 0.24 -1.66 16 21 C -0.14 -5.49 6.77 31.99 0.22 -5.27 16 22 C 0.16 7.85 5.89 86.86 0.51 8.36 16 23 N -0.61 -30.18 3.13 -668.28 -2.09 -32.27 16 24 C -0.22 -11.94 9.87 84.03 0.83 -11.11 16 25 H 0.09 4.35 7.83 -2.91 -0.02 4.33 16 26 C -0.07 -4.02 5.49 84.86 0.47 -3.55 16 27 N -0.95 -56.58 10.09 21.65 0.22 -56.36 16 28 Si 0.98 44.91 29.55 68.60 2.03 46.94 16 29 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 30 H -0.30 -14.08 7.11 99.48 0.71 -13.37 16 31 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 32 H 0.05 1.74 8.02 -2.39 -0.02 1.72 16 33 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 34 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 35 H 0.41 7.48 7.28 -92.71 -0.68 6.80 16 36 H 0.23 0.44 7.44 -2.91 -0.02 0.42 16 37 H 0.14 3.74 8.06 -2.91 -0.02 3.72 16 38 H 0.07 2.75 8.14 -2.39 -0.02 2.74 16 39 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 40 H 0.08 4.38 5.87 -2.38 -0.01 4.37 16 41 H -0.02 -1.04 8.14 -2.39 -0.02 -1.06 16 42 H 0.24 14.27 8.31 -92.72 -0.77 13.50 16 Total: -1.00 -81.65 359.31 -1.17 -82.82 By element: Atomic # 1 Polarization: 11.11 SS G_CDS: -3.51 Total: 7.60 kcal Atomic # 6 Polarization: 9.04 SS G_CDS: 6.14 Total: 15.17 kcal Atomic # 7 Polarization: -123.06 SS G_CDS: -5.76 Total: -128.82 kcal Atomic # 8 Polarization: -23.64 SS G_CDS: -0.07 Total: -23.71 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.94 kcal Total: -81.65 -1.17 -82.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605428794.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 219.543 kcal (2) G-P(sol) polarization free energy of solvation -81.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 137.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.817 kcal (6) G-S(sol) free energy of system = (1) + (5) 136.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds