Wall clock time and date at job start Tue Mar 31 2020 17:38:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09012 * 109.47032 * 2 1 4 4 N 1.46900 * 109.46991 * 240.00447 * 2 1 3 5 5 C 1.46898 * 111.00341 * 85.99930 * 4 2 1 6 6 C 1.53005 * 109.47003 * 185.14046 * 5 4 2 7 7 C 1.50691 * 115.54968 * 275.59248 * 6 5 4 8 8 H 1.08007 * 119.99884 * 114.45403 * 7 6 5 9 9 C 1.37876 * 120.00799 * 294.45268 * 7 6 5 10 10 N 1.31522 * 119.99256 * 353.17059 * 9 7 6 11 11 Si 1.86795 * 120.00421 * 173.16800 * 9 7 6 12 12 H 1.48497 * 109.46992 * 90.00141 * 11 9 7 13 13 H 1.48503 * 109.47038 * 210.00198 * 11 9 7 14 14 H 1.48500 * 109.47045 * 329.99746 * 11 9 7 15 15 C 1.52996 * 117.49459 * 129.88879 * 6 5 4 16 16 C 1.52997 * 60.00093 * 252.50829 * 15 6 5 17 17 C 1.50694 * 109.47436 * 119.99810 * 2 1 3 18 18 C 1.38303 * 119.89173 * 93.54126 * 17 2 1 19 19 C 1.38017 * 120.14580 * 179.76954 * 18 17 2 20 20 C 1.39330 * 119.93024 * 0.44154 * 19 18 17 21 21 C 1.48467 * 120.10757 * 179.81529 * 20 19 18 22 22 N 1.34041 * 126.67598 * 179.69675 * 21 20 19 23 23 N 1.28986 * 107.26599 * 180.02562 * 22 21 20 24 24 N 1.28729 * 108.94571 * 359.97438 * 23 22 21 25 25 H 0.97005 * 125.33878 * 180.02562 * 24 23 22 26 26 N 1.28868 * 109.31442 * 0.02562 * 24 23 22 27 27 C 1.39249 * 119.78889 * 359.53287 * 20 19 18 28 28 C 1.38275 * 119.85849 * 0.25986 * 27 20 19 29 29 F 1.35096 * 119.96973 * 179.97438 * 28 27 20 30 30 H 1.08999 * 109.47281 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46840 * 299.99852 * 1 2 3 32 32 H 1.09003 * 109.47618 * 59.99901 * 1 2 3 33 33 H 1.00905 * 110.99424 * 209.95378 * 4 2 1 34 34 H 1.09004 * 109.46754 * 305.14203 * 5 4 2 35 35 H 1.08998 * 109.47086 * 65.13829 * 5 4 2 36 36 H 0.97003 * 119.99308 * 185.00991 * 10 9 7 37 37 H 1.09005 * 117.50243 * 359.97438 * 15 6 5 38 38 H 1.09004 * 117.49964 * 145.02356 * 15 6 5 39 39 H 1.08996 * 117.50368 * 252.51011 * 16 15 6 40 40 H 1.09009 * 117.51576 * 107.48303 * 16 15 6 41 41 H 1.07994 * 119.92928 * 0.02562 * 18 17 2 42 42 H 1.07999 * 120.03766 * 180.25019 * 19 18 17 43 43 H 1.08007 * 120.07020 * 180.27732 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 7 2.0196 -0.6924 -1.1995 5 6 2.1049 0.2283 -2.3410 6 6 2.4938 -0.5525 -3.5980 7 6 3.9709 -0.7811 -3.7900 8 1 4.3716 -1.7833 -3.7522 9 6 4.8109 0.2891 -4.0141 10 7 4.3098 1.4917 -4.1940 11 14 6.6603 0.0309 -4.0619 12 1 7.0819 -0.2723 -5.4531 13 1 7.3443 1.2635 -3.5948 14 1 7.0248 -1.1035 -3.1756 15 6 1.6421 -0.3429 -4.8515 16 6 1.5415 -1.6535 -4.0687 17 6 2.0323 -0.7103 1.2304 18 6 2.3319 -2.0593 1.1735 19 6 2.7969 -2.7141 2.2959 20 6 2.9562 -2.0166 3.4916 21 6 3.4522 -2.7179 4.7025 22 7 3.6588 -2.1783 5.9120 23 7 4.0900 -3.1188 6.6822 24 7 4.1593 -4.2129 6.0074 25 1 4.4542 -5.0690 6.3553 26 7 3.7753 -3.9923 4.7972 27 6 2.6542 -0.6583 3.5456 28 6 2.1930 -0.0101 2.4147 29 9 1.8989 1.3075 2.4647 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 2.9096 -1.1342 -1.0239 34 1 1.1375 0.7065 -2.4950 35 1 2.8583 0.9894 -2.1383 36 1 4.8942 2.2312 -4.4236 37 1 0.8044 0.3510 -4.7806 38 1 2.1501 -0.3702 -5.8156 39 1 1.9832 -2.5431 -4.5176 40 1 0.6379 -1.8220 -3.4826 41 1 2.2057 -2.6007 0.2476 42 1 3.0342 -3.7666 2.2484 43 1 2.7802 -0.1123 4.4689 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001609123526.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:38:20 Heat of formation + Delta-G solvation = 128.901133 kcal Electronic energy + Delta-G solvation = -27500.330770 eV Core-core repulsion = 23498.755106 eV Total energy + Delta-G solvation = -4001.575664 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.150 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -48.87840 -44.73610 -39.48498 -37.18612 -35.58341 -34.54159 -33.50009 -31.99038 -30.88675 -30.73811 -28.94228 -25.79874 -25.30647 -24.92443 -24.13529 -22.77653 -21.94675 -21.01409 -20.16300 -19.53088 -19.04787 -17.64976 -17.42060 -16.49708 -16.31031 -15.71293 -15.61850 -15.12071 -14.69637 -14.53386 -14.33505 -14.03701 -13.74340 -13.49243 -13.21064 -12.94262 -12.67878 -12.58194 -12.40737 -11.94035 -11.77349 -11.72755 -11.63472 -11.42336 -11.36732 -11.10330 -10.94779 -10.94456 -10.83953 -10.55184 -10.42595 -10.10745 -9.33833 -8.98005 -8.82691 -8.61591 -8.47126 -8.09053 -7.62013 -6.04045 -4.09181 0.42734 0.90669 1.11452 1.94044 2.08445 3.27002 3.34917 3.35075 3.37537 3.52452 3.87659 4.27189 4.38608 4.53821 4.69376 4.85986 4.94025 5.08409 5.14146 5.21786 5.29849 5.51945 5.57506 5.68784 5.72390 5.86376 5.97298 6.05487 6.09759 6.14102 6.20463 6.25155 6.35097 6.46905 6.53183 6.60535 6.73613 6.88369 6.92723 6.94426 7.16849 7.51689 7.56859 7.85513 7.87034 7.90611 8.15218 8.48960 8.92677 9.55118 11.03421 Molecular weight = 331.15amu Principal moments of inertia in cm(-1) A = 0.012888 B = 0.003014 C = 0.002767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2172.083319 B = 9286.664411 C =10115.037031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.117 3.883 3 H 0.055 0.945 4 N -0.677 5.677 5 C 0.105 3.895 6 C 0.054 3.946 7 C -0.495 4.495 8 H 0.059 0.941 9 C 0.070 3.930 10 N -0.878 5.878 11 Si 0.885 3.115 12 H -0.281 1.281 13 H -0.287 1.287 14 H -0.273 1.273 15 C -0.178 4.178 16 C -0.192 4.192 17 C -0.087 4.087 18 C -0.078 4.078 19 C -0.087 4.087 20 C -0.004 4.004 21 C 0.225 3.775 22 N -0.268 5.268 23 N -0.050 5.050 24 N -0.228 5.228 25 H 0.476 0.524 26 N -0.290 5.290 27 C -0.113 4.113 28 C 0.100 3.900 29 F -0.132 7.132 30 H 0.062 0.938 31 H 0.049 0.951 32 H 0.061 0.939 33 H 0.345 0.655 34 H 0.041 0.959 35 H 0.047 0.953 36 H 0.260 0.740 37 H 0.060 0.940 38 H 0.075 0.925 39 H 0.069 0.931 40 H 0.071 0.929 41 H 0.156 0.844 42 H 0.139 0.861 43 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.897 -8.967 17.981 20.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.006 3.994 3 H 0.073 0.927 4 N -0.309 5.309 5 C -0.023 4.023 6 C 0.053 3.947 7 C -0.533 4.533 8 H 0.077 0.923 9 C -0.133 4.133 10 N -0.515 5.515 11 Si 0.713 3.287 12 H -0.207 1.207 13 H -0.213 1.213 14 H -0.198 1.198 15 C -0.216 4.216 16 C -0.230 4.230 17 C -0.089 4.089 18 C -0.096 4.096 19 C -0.107 4.107 20 C -0.008 4.008 21 C -0.055 4.055 22 N -0.141 5.141 23 N -0.046 5.046 24 N -0.074 5.074 25 H 0.330 0.670 26 N -0.141 5.141 27 C -0.134 4.134 28 C 0.080 3.920 29 F -0.111 7.111 30 H 0.081 0.919 31 H 0.068 0.932 32 H 0.080 0.920 33 H 0.164 0.836 34 H 0.060 0.940 35 H 0.065 0.935 36 H 0.070 0.930 37 H 0.078 0.922 38 H 0.094 0.906 39 H 0.088 0.912 40 H 0.089 0.911 41 H 0.174 0.826 42 H 0.157 0.843 43 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -4.271 -8.968 18.486 20.985 hybrid contribution 1.902 0.262 -0.076 1.921 sum -2.369 -8.705 18.410 20.502 Atomic orbital electron populations 1.21724 0.93521 1.02305 1.01216 1.20414 0.96095 0.95817 0.87032 0.92686 1.60750 1.34484 1.32621 1.03035 1.21503 0.98121 0.93254 0.89421 1.18727 0.91392 0.94885 0.89682 1.20545 0.89987 0.92875 1.49891 0.92290 1.24985 0.98297 0.95166 0.94831 1.69981 1.35032 1.00082 1.46424 0.86696 0.85963 0.77667 0.78365 1.20706 1.21264 1.19767 1.22718 1.02366 0.98210 0.98307 1.22721 1.02104 0.92666 1.05494 1.20430 0.98919 0.95021 0.94536 1.21055 0.96415 0.92954 0.99178 1.21245 0.97886 1.00691 0.90913 1.16874 1.03201 0.91969 0.88717 1.23593 1.00674 0.86917 0.94268 1.76101 1.15345 1.22019 1.00626 1.78914 1.14420 0.89661 1.21566 1.47738 1.41873 1.13059 1.04704 0.67002 1.74948 1.18402 1.18485 1.02295 1.20972 1.00237 0.93705 0.98516 1.17276 1.02086 0.78454 0.94163 1.91513 1.91000 1.31629 1.96922 0.91917 0.93164 0.91956 0.83575 0.94004 0.93518 0.93037 0.92175 0.90649 0.91209 0.91067 0.82610 0.84289 0.83660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.81 9.40 37.15 0.35 -1.46 16 2 C 0.12 1.82 2.61 -68.87 -0.18 1.64 16 3 H 0.06 0.95 7.44 -51.92 -0.39 0.57 16 4 N -0.68 -12.09 5.45 -107.95 -0.59 -12.67 16 5 C 0.11 2.28 5.28 -3.82 -0.02 2.26 16 6 C 0.05 1.27 1.49 -155.66 -0.23 1.04 16 7 C -0.50 -12.95 8.82 -34.45 -0.30 -13.25 16 8 H 0.06 1.55 7.82 -52.48 -0.41 1.14 16 9 C 0.07 1.87 5.24 -17.82 -0.09 1.78 16 10 N -0.88 -24.32 12.57 55.43 0.70 -23.63 16 11 Si 0.89 20.65 29.55 -169.99 -5.02 15.63 16 12 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 13 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 14 H -0.27 -6.27 7.11 56.52 0.40 -5.86 16 15 C -0.18 -4.09 9.88 -26.73 -0.26 -4.35 16 16 C -0.19 -4.09 9.85 -26.73 -0.26 -4.36 16 17 C -0.09 -1.20 4.92 -104.50 -0.51 -1.72 16 18 C -0.08 -0.96 8.83 -39.64 -0.35 -1.31 16 19 C -0.09 -0.98 9.70 -39.26 -0.38 -1.36 16 20 C 0.00 -0.05 5.88 -104.90 -0.62 -0.67 16 21 C 0.23 2.62 7.94 -156.31 -1.24 1.38 16 22 N -0.27 -3.24 12.23 32.15 0.39 -2.84 16 23 N -0.05 -0.50 13.47 60.35 0.81 0.31 16 24 N -0.23 -1.64 7.90 60.35 0.48 -1.16 16 25 H 0.48 1.04 8.96 -340.36 -3.05 -2.01 16 26 N -0.29 -2.86 12.08 32.17 0.39 -2.47 16 27 C -0.11 -1.39 9.68 -39.19 -0.38 -1.77 16 28 C 0.10 1.36 7.23 -39.47 -0.29 1.07 16 29 F -0.13 -1.91 16.52 2.25 0.04 -1.87 16 30 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.06 0.91 7.45 -51.93 -0.39 0.52 16 33 H 0.34 6.33 7.33 -39.29 -0.29 6.04 16 34 H 0.04 0.89 7.17 -51.93 -0.37 0.52 16 35 H 0.05 1.15 7.25 -51.93 -0.38 0.78 16 36 H 0.26 6.94 8.32 -40.82 -0.34 6.60 16 37 H 0.06 1.31 8.06 -51.93 -0.42 0.90 16 38 H 0.07 1.83 8.14 -51.93 -0.42 1.41 16 39 H 0.07 1.47 8.14 -51.93 -0.42 1.05 16 40 H 0.07 1.41 8.14 -51.92 -0.42 0.99 16 41 H 0.16 1.90 7.02 -52.49 -0.37 1.53 16 42 H 0.14 1.33 7.88 -52.49 -0.41 0.92 16 43 H 0.15 1.64 7.89 -52.48 -0.41 1.23 16 LS Contribution 371.15 15.07 5.59 5.59 Total: -1.00 -29.63 371.15 -10.12 -39.75 By element: Atomic # 1 Polarization: 12.58 SS G_CDS: -8.13 Total: 4.44 kcal Atomic # 6 Polarization: -16.31 SS G_CDS: -4.77 Total: -21.08 kcal Atomic # 7 Polarization: -44.64 SS G_CDS: 2.18 Total: -42.47 kcal Atomic # 9 Polarization: -1.91 SS G_CDS: 0.04 Total: -1.87 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -29.63 -10.12 -39.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609123526.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.656 kcal (2) G-P(sol) polarization free energy of solvation -29.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 139.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.755 kcal (6) G-S(sol) free energy of system = (1) + (5) 128.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds