Wall clock time and date at job start Tue Mar 31 2020 17:38:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47091 * 2 1 4 4 N 1.46900 * 109.47005 * 120.00507 * 2 1 3 5 5 C 1.46903 * 110.99818 * 272.43572 * 4 2 1 6 6 C 1.53001 * 109.46955 * 185.07324 * 5 4 2 7 7 C 1.50694 * 115.55821 * 269.60602 * 6 5 4 8 8 H 1.08002 * 119.99668 * 142.58504 * 7 6 5 9 9 C 1.37871 * 120.00190 * 322.57175 * 7 6 5 10 10 N 1.31514 * 120.00178 * 342.27058 * 9 7 6 11 11 Si 1.86806 * 120.00103 * 162.26288 * 9 7 6 12 12 H 1.48509 * 109.46917 * 60.00438 * 11 9 7 13 13 H 1.48495 * 109.47233 * 180.02562 * 11 9 7 14 14 H 1.48498 * 109.47350 * 300.00747 * 11 9 7 15 15 C 1.53004 * 117.49884 * 55.29352 * 6 5 4 16 16 C 1.53007 * 60.02970 * 107.47626 * 15 6 5 17 17 C 1.50705 * 109.46914 * 240.00468 * 2 1 3 18 18 C 1.38300 * 119.89215 * 265.88109 * 17 2 1 19 19 C 1.38020 * 120.14251 * 180.02562 * 18 17 2 20 20 C 1.39325 * 119.93195 * 359.97438 * 19 18 17 21 21 C 1.48470 * 120.10279 * 180.02562 * 20 19 18 22 22 N 1.34048 * 126.67014 * 359.69095 * 21 20 19 23 23 N 1.28987 * 107.26178 * 179.83264 * 22 21 20 24 24 N 1.28735 * 108.94648 * 0.43743 * 23 22 21 25 25 H 0.97001 * 125.34312 * 179.76174 * 24 23 22 26 26 N 1.28872 * 109.31379 * 359.72022 * 24 23 22 27 27 C 1.39251 * 119.79070 * 0.02562 * 20 19 18 28 28 C 1.38274 * 119.85523 * 359.72105 * 27 20 19 29 29 F 1.35096 * 119.96624 * 180.29418 * 28 27 20 30 30 H 1.09000 * 109.47402 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47120 * 299.99979 * 1 2 3 32 32 H 1.09010 * 109.47068 * 59.99656 * 1 2 3 33 33 H 1.00898 * 110.99912 * 36.39328 * 4 2 1 34 34 H 1.08991 * 109.46985 * 65.07047 * 5 4 2 35 35 H 1.09002 * 109.46863 * 305.06993 * 5 4 2 36 36 H 0.96997 * 119.99858 * 185.04753 * 10 9 7 37 37 H 1.08996 * 117.49573 * 214.97777 * 15 6 5 38 38 H 1.09002 * 117.49543 * 359.97438 * 15 6 5 39 39 H 1.08993 * 117.49698 * 107.50261 * 16 15 6 40 40 H 1.08999 * 117.49313 * 252.51972 * 16 15 6 41 41 H 1.07998 * 119.92976 * 359.97275 * 18 17 2 42 42 H 1.07995 * 120.03059 * 179.97438 * 19 18 17 43 43 H 1.08003 * 120.06853 * 179.97438 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6926 1.1994 5 6 2.1402 0.2361 2.3312 6 6 2.7699 -0.4899 3.5217 7 6 1.8005 -1.1558 4.4640 8 1 2.0504 -2.1055 4.9134 9 6 0.5949 -0.5524 4.7526 10 7 0.4245 0.7280 4.5055 11 14 -0.7968 -1.5538 5.4943 12 1 -0.3594 -2.1216 6.7950 13 1 -1.9772 -0.6785 5.7077 14 1 -1.1601 -2.6574 4.5695 15 6 4.1206 -1.1731 3.2985 16 6 4.0415 0.1124 4.1245 17 6 2.0323 -0.7103 -1.2306 18 6 2.3432 -2.0566 -1.1706 19 6 2.8042 -2.7122 -2.2944 20 6 2.9561 -2.0164 -3.4918 21 6 3.4511 -2.7179 -4.7031 22 7 3.7957 -4.0101 -4.7951 23 7 4.1669 -4.2215 -6.0122 24 7 4.0770 -3.1208 -6.6738 25 1 4.3006 -3.0096 -7.6111 26 7 3.6424 -2.1900 -5.8955 27 6 2.6422 -0.6609 -3.5490 28 6 2.1761 -0.0140 -2.4193 29 9 1.8653 1.2996 -2.4738 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 1.4253 -1.4735 1.4340 34 1 1.1512 0.6001 2.6093 35 1 2.7700 1.0783 2.0446 36 1 -0.3962 1.1690 4.7753 37 1 4.3080 -2.1042 3.8333 38 1 4.5603 -1.1057 2.3034 39 1 4.1770 0.0270 5.2026 40 1 4.4290 1.0255 3.6726 41 1 2.2259 -2.5959 -0.2423 42 1 3.0468 -3.7634 -2.2454 43 1 2.7586 -0.1171 -4.4748 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001609123528.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:38:24 Heat of formation + Delta-G solvation = 132.379209 kcal Electronic energy + Delta-G solvation = -27560.578677 eV Core-core repulsion = 23559.153834 eV Total energy + Delta-G solvation = -4001.424843 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.150 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -48.83230 -44.70470 -39.36287 -37.22175 -35.56017 -34.52191 -33.50320 -32.19847 -30.77583 -30.66688 -28.73164 -25.73908 -25.21705 -24.90655 -24.06997 -22.60295 -22.14161 -21.02738 -20.29887 -19.50742 -19.03109 -17.52451 -17.39231 -16.43143 -16.30936 -15.71438 -15.55459 -15.01314 -14.78017 -14.25886 -14.22378 -13.92226 -13.87249 -13.47866 -13.14510 -12.95055 -12.73356 -12.55914 -12.30104 -12.08762 -11.80371 -11.62575 -11.59459 -11.38241 -11.30012 -11.06206 -10.91275 -10.83646 -10.77327 -10.68353 -10.39367 -10.13898 -9.23550 -9.00856 -8.89320 -8.62556 -8.52554 -8.16330 -7.45883 -6.08958 -4.08543 0.49434 0.95092 1.19799 1.96521 2.14919 3.24474 3.31137 3.34467 3.39021 3.61704 3.89984 4.33504 4.36877 4.58784 4.80313 4.93415 5.01324 5.05866 5.18417 5.21435 5.34515 5.48055 5.58757 5.67784 5.78107 5.87354 6.04608 6.07737 6.14938 6.15709 6.22841 6.34139 6.45091 6.48654 6.55084 6.67453 6.82982 6.89102 6.98805 7.01886 7.18005 7.48526 7.57394 7.88613 7.94292 7.97929 8.22380 8.48995 8.87495 9.47425 10.91461 Molecular weight = 331.15amu Principal moments of inertia in cm(-1) A = 0.017557 B = 0.002708 C = 0.002645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1594.402179 B =10337.536297 C =10582.699343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.117 3.883 3 H 0.086 0.914 4 N -0.678 5.678 5 C 0.088 3.912 6 C 0.057 3.943 7 C -0.490 4.490 8 H 0.060 0.940 9 C 0.070 3.930 10 N -0.874 5.874 11 Si 0.885 3.115 12 H -0.277 1.277 13 H -0.288 1.288 14 H -0.274 1.274 15 C -0.192 4.192 16 C -0.205 4.205 17 C -0.066 4.066 18 C -0.068 4.068 19 C -0.085 4.085 20 C -0.009 4.009 21 C 0.228 3.772 22 N -0.265 5.265 23 N -0.050 5.050 24 N -0.229 5.229 25 H 0.475 0.525 26 N -0.296 5.296 27 C -0.118 4.118 28 C 0.093 3.907 29 F -0.135 7.135 30 H 0.058 0.942 31 H 0.069 0.931 32 H 0.053 0.947 33 H 0.343 0.657 34 H 0.087 0.913 35 H 0.036 0.964 36 H 0.262 0.738 37 H 0.068 0.932 38 H 0.074 0.926 39 H 0.073 0.927 40 H 0.060 0.940 41 H 0.151 0.849 42 H 0.140 0.860 43 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.042 -3.846 -20.667 21.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.006 3.994 3 H 0.104 0.896 4 N -0.309 5.309 5 C -0.040 4.040 6 C 0.056 3.944 7 C -0.527 4.527 8 H 0.078 0.922 9 C -0.133 4.133 10 N -0.511 5.511 11 Si 0.713 3.287 12 H -0.203 1.203 13 H -0.214 1.214 14 H -0.200 1.200 15 C -0.230 4.230 16 C -0.243 4.243 17 C -0.068 4.068 18 C -0.086 4.086 19 C -0.105 4.105 20 C -0.013 4.013 21 C -0.052 4.052 22 N -0.138 5.138 23 N -0.046 5.046 24 N -0.075 5.075 25 H 0.329 0.671 26 N -0.147 5.147 27 C -0.139 4.139 28 C 0.073 3.927 29 F -0.114 7.114 30 H 0.077 0.923 31 H 0.088 0.912 32 H 0.072 0.928 33 H 0.162 0.838 34 H 0.105 0.895 35 H 0.054 0.946 36 H 0.072 0.928 37 H 0.086 0.914 38 H 0.092 0.908 39 H 0.091 0.909 40 H 0.079 0.921 41 H 0.168 0.832 42 H 0.158 0.842 43 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 3.744 -4.120 -21.217 21.935 hybrid contribution -1.549 0.447 0.227 1.628 sum 2.195 -3.673 -20.990 21.422 Atomic orbital electron populations 1.22435 0.95921 1.02342 1.02515 1.20350 0.92875 0.97369 0.88758 0.89567 1.60612 1.54197 1.11767 1.04295 1.21731 1.02886 0.92096 0.87251 1.18853 0.85406 0.96344 0.93796 1.20582 0.99902 1.05689 1.26552 0.92203 1.24965 0.98385 0.94603 0.95304 1.69905 1.26831 1.08505 1.45892 0.86759 0.81765 0.80436 0.79752 1.20252 1.21359 1.19990 1.22696 1.05973 0.95157 0.99126 1.22977 1.08666 0.94897 0.97776 1.20344 0.97862 0.94841 0.93793 1.20953 0.96068 0.93037 0.98530 1.21264 0.97707 1.00791 0.90784 1.16851 1.03740 0.91899 0.88792 1.23630 1.00474 0.88771 0.92314 1.76111 1.14927 1.14528 1.08227 1.78920 1.15523 1.10561 0.99561 1.47722 1.41515 1.03546 1.14727 0.67099 1.74942 1.18710 1.18421 1.02668 1.20909 1.00880 0.93772 0.98340 1.17269 1.02625 0.78548 0.94231 1.91495 1.90755 1.32191 1.96949 0.92304 0.91154 0.92773 0.83842 0.89538 0.94563 0.92773 0.91373 0.90781 0.90860 0.92099 0.83175 0.84187 0.84196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.59 9.15 37.16 0.34 -2.25 16 2 C 0.12 1.86 2.58 -68.86 -0.18 1.68 16 3 H 0.09 1.46 7.30 -51.93 -0.38 1.08 16 4 N -0.68 -12.31 4.98 -107.95 -0.54 -12.85 16 5 C 0.09 1.93 5.28 -3.82 -0.02 1.91 16 6 C 0.06 1.35 1.97 -155.62 -0.31 1.04 16 7 C -0.49 -12.70 8.99 -34.45 -0.31 -13.01 16 8 H 0.06 1.57 7.88 -52.49 -0.41 1.16 16 9 C 0.07 1.81 5.04 -17.82 -0.09 1.72 16 10 N -0.87 -23.16 11.09 55.43 0.61 -22.55 16 11 Si 0.89 19.98 29.58 -169.99 -5.03 14.95 16 12 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 13 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 14 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 15 C -0.19 -4.14 9.73 -26.73 -0.26 -4.40 16 16 C -0.20 -4.68 9.89 -26.69 -0.26 -4.95 16 17 C -0.07 -0.93 5.06 -104.50 -0.53 -1.46 16 18 C -0.07 -0.88 9.31 -39.64 -0.37 -1.25 16 19 C -0.09 -1.01 9.70 -39.26 -0.38 -1.39 16 20 C -0.01 -0.11 5.88 -104.90 -0.62 -0.73 16 21 C 0.23 2.68 7.94 -156.30 -1.24 1.44 16 22 N -0.26 -3.21 12.23 32.16 0.39 -2.82 16 23 N -0.05 -0.50 13.47 60.35 0.81 0.31 16 24 N -0.23 -1.66 7.90 60.35 0.48 -1.19 16 25 H 0.47 1.04 8.96 -340.36 -3.05 -2.01 16 26 N -0.30 -2.96 12.08 32.17 0.39 -2.57 16 27 C -0.12 -1.42 9.68 -39.19 -0.38 -1.80 16 28 C 0.09 1.26 7.23 -39.47 -0.29 0.97 16 29 F -0.14 -1.92 16.54 2.25 0.04 -1.88 16 30 H 0.06 0.83 8.13 -51.93 -0.42 0.41 16 31 H 0.07 1.18 7.74 -51.93 -0.40 0.78 16 32 H 0.05 0.74 8.14 -51.92 -0.42 0.31 16 33 H 0.34 6.30 8.02 -39.29 -0.31 5.99 16 34 H 0.09 2.10 4.94 -51.93 -0.26 1.84 16 35 H 0.04 0.80 7.66 -51.93 -0.40 0.40 16 36 H 0.26 6.69 8.32 -40.82 -0.34 6.35 16 37 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 38 H 0.07 1.52 8.14 -51.93 -0.42 1.10 16 39 H 0.07 1.71 8.14 -51.93 -0.42 1.29 16 40 H 0.06 1.33 8.03 -51.93 -0.42 0.91 16 41 H 0.15 1.93 6.96 -52.49 -0.37 1.57 16 42 H 0.14 1.50 7.89 -52.49 -0.41 1.08 16 43 H 0.14 1.49 7.88 -52.48 -0.41 1.08 16 LS Contribution 368.89 15.07 5.56 5.56 Total: -1.00 -28.61 368.89 -10.24 -38.86 By element: Atomic # 1 Polarization: 14.74 SS G_CDS: -8.07 Total: 6.67 kcal Atomic # 6 Polarization: -17.60 SS G_CDS: -4.89 Total: -22.49 kcal Atomic # 7 Polarization: -43.81 SS G_CDS: 2.15 Total: -41.67 kcal Atomic # 9 Polarization: -1.92 SS G_CDS: 0.04 Total: -1.88 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -5.03 Total: 14.95 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -28.61 -10.24 -38.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609123528.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.235 kcal (2) G-P(sol) polarization free energy of solvation -28.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 142.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.856 kcal (6) G-S(sol) free energy of system = (1) + (5) 132.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds