Wall clock time and date at job start Tue Mar 31 2020 17:38:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47091 * 2 1 4 4 N 1.46900 * 109.47005 * 120.00507 * 2 1 3 5 5 C 1.46903 * 110.99818 * 272.43572 * 4 2 1 6 6 C 1.53001 * 109.46955 * 185.07324 * 5 4 2 7 7 C 1.50694 * 115.55821 * 269.60602 * 6 5 4 8 8 H 1.08002 * 119.99668 * 142.58504 * 7 6 5 9 9 C 1.37871 * 120.00190 * 322.57175 * 7 6 5 10 10 N 1.31514 * 120.00178 * 342.27058 * 9 7 6 11 11 Si 1.86806 * 120.00103 * 162.26288 * 9 7 6 12 12 H 1.48509 * 109.46917 * 60.00438 * 11 9 7 13 13 H 1.48495 * 109.47233 * 180.02562 * 11 9 7 14 14 H 1.48498 * 109.47350 * 300.00747 * 11 9 7 15 15 C 1.53004 * 117.49884 * 55.29352 * 6 5 4 16 16 C 1.53007 * 60.02970 * 107.47626 * 15 6 5 17 17 C 1.50705 * 109.46914 * 240.00468 * 2 1 3 18 18 C 1.38300 * 119.89215 * 265.88109 * 17 2 1 19 19 C 1.38020 * 120.14251 * 180.02562 * 18 17 2 20 20 C 1.39325 * 119.93195 * 359.97438 * 19 18 17 21 21 C 1.48470 * 120.10279 * 180.02562 * 20 19 18 22 22 N 1.34048 * 126.67014 * 359.69095 * 21 20 19 23 23 N 1.28987 * 107.26178 * 179.83264 * 22 21 20 24 24 N 1.28735 * 108.94648 * 0.43743 * 23 22 21 25 25 H 0.97001 * 125.34312 * 179.76174 * 24 23 22 26 26 N 1.28872 * 109.31379 * 359.72022 * 24 23 22 27 27 C 1.39251 * 119.79070 * 0.02562 * 20 19 18 28 28 C 1.38274 * 119.85523 * 359.72105 * 27 20 19 29 29 F 1.35096 * 119.96624 * 180.29418 * 28 27 20 30 30 H 1.09000 * 109.47402 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47120 * 299.99979 * 1 2 3 32 32 H 1.09010 * 109.47068 * 59.99656 * 1 2 3 33 33 H 1.00898 * 110.99912 * 36.39328 * 4 2 1 34 34 H 1.08991 * 109.46985 * 65.07047 * 5 4 2 35 35 H 1.09002 * 109.46863 * 305.06993 * 5 4 2 36 36 H 0.96997 * 119.99858 * 185.04753 * 10 9 7 37 37 H 1.08996 * 117.49573 * 214.97777 * 15 6 5 38 38 H 1.09002 * 117.49543 * 359.97438 * 15 6 5 39 39 H 1.08993 * 117.49698 * 107.50261 * 16 15 6 40 40 H 1.08999 * 117.49313 * 252.51972 * 16 15 6 41 41 H 1.07998 * 119.92976 * 359.97275 * 18 17 2 42 42 H 1.07995 * 120.03059 * 179.97438 * 19 18 17 43 43 H 1.08003 * 120.06853 * 179.97438 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6926 1.1994 5 6 2.1402 0.2361 2.3312 6 6 2.7699 -0.4899 3.5217 7 6 1.8005 -1.1558 4.4640 8 1 2.0504 -2.1055 4.9134 9 6 0.5949 -0.5524 4.7526 10 7 0.4245 0.7280 4.5055 11 14 -0.7968 -1.5538 5.4943 12 1 -0.3594 -2.1216 6.7950 13 1 -1.9772 -0.6785 5.7077 14 1 -1.1601 -2.6574 4.5695 15 6 4.1206 -1.1731 3.2985 16 6 4.0415 0.1124 4.1245 17 6 2.0323 -0.7103 -1.2306 18 6 2.3432 -2.0566 -1.1706 19 6 2.8042 -2.7122 -2.2944 20 6 2.9561 -2.0164 -3.4918 21 6 3.4511 -2.7179 -4.7031 22 7 3.7957 -4.0101 -4.7951 23 7 4.1669 -4.2215 -6.0122 24 7 4.0770 -3.1208 -6.6738 25 1 4.3006 -3.0096 -7.6111 26 7 3.6424 -2.1900 -5.8955 27 6 2.6422 -0.6609 -3.5490 28 6 2.1761 -0.0140 -2.4193 29 9 1.8653 1.2996 -2.4738 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 1.4253 -1.4735 1.4340 34 1 1.1512 0.6001 2.6093 35 1 2.7700 1.0783 2.0446 36 1 -0.3962 1.1690 4.7753 37 1 4.3080 -2.1042 3.8333 38 1 4.5603 -1.1057 2.3034 39 1 4.1770 0.0270 5.2026 40 1 4.4290 1.0255 3.6726 41 1 2.2259 -2.5959 -0.2423 42 1 3.0468 -3.7634 -2.2454 43 1 2.7586 -0.1171 -4.4748 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001609123528.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:38:24 Heat of formation + Delta-G solvation = 116.527544 kcal Electronic energy + Delta-G solvation = -27561.266057 eV Core-core repulsion = 23559.153834 eV Total energy + Delta-G solvation = -4002.112223 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.150 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -49.90424 -45.48195 -40.42346 -38.83053 -36.95725 -35.34366 -34.42008 -34.16581 -31.98029 -31.65277 -29.93752 -27.66119 -26.33573 -25.87397 -25.39195 -23.58218 -23.21749 -22.76159 -21.50345 -20.86387 -20.27673 -18.59186 -18.15828 -18.02521 -17.41930 -16.95491 -16.69188 -16.60361 -16.12969 -15.69868 -15.48277 -15.26416 -15.07791 -14.68602 -14.46587 -14.16699 -13.92975 -13.66848 -13.51827 -13.37735 -13.22193 -13.04914 -12.82656 -12.80282 -12.53465 -12.40675 -12.35684 -12.21131 -12.05144 -11.98578 -11.90147 -11.73073 -11.03716 -10.90006 -10.48011 -10.02062 -9.87385 -9.52865 -9.04814 -8.04077 -6.10469 -0.41674 0.14973 0.21498 1.23136 1.40522 1.44417 1.48155 1.54422 2.45009 2.54348 2.62884 3.00677 3.04357 3.25093 3.44641 3.72718 3.84840 3.93505 4.07435 4.17746 4.21508 4.28349 4.39310 4.42926 4.45524 4.67770 4.72208 4.80440 4.86348 4.91134 5.02903 5.09527 5.11357 5.15860 5.23177 5.24466 5.33238 5.40506 5.46995 5.60867 5.65042 5.69269 5.81929 6.06229 6.38673 6.52898 6.66055 6.92997 7.09710 7.47690 8.93915 Molecular weight = 331.15amu Principal moments of inertia in cm(-1) A = 0.017557 B = 0.002708 C = 0.002645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1594.402179 B =10337.536297 C =10582.699343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.121 3.879 3 H 0.071 0.929 4 N -0.669 5.669 5 C 0.103 3.897 6 C 0.034 3.966 7 C -0.508 4.508 8 H 0.051 0.949 9 C 0.034 3.966 10 N -0.896 5.896 11 Si 0.942 3.058 12 H -0.279 1.279 13 H -0.288 1.288 14 H -0.266 1.266 15 C -0.167 4.167 16 C -0.213 4.213 17 C -0.078 4.078 18 C -0.069 4.069 19 C -0.079 4.079 20 C -0.006 4.006 21 C 0.213 3.787 22 N -0.288 5.288 23 N -0.054 5.054 24 N -0.199 5.199 25 H 0.495 0.505 26 N -0.294 5.294 27 C -0.110 4.110 28 C 0.085 3.915 29 F -0.142 7.142 30 H 0.067 0.933 31 H 0.046 0.954 32 H 0.067 0.933 33 H 0.343 0.657 34 H 0.062 0.938 35 H 0.027 0.973 36 H 0.262 0.738 37 H 0.071 0.929 38 H 0.087 0.913 39 H 0.062 0.938 40 H 0.067 0.933 41 H 0.150 0.850 42 H 0.153 0.847 43 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.237 -5.008 -22.665 23.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.011 3.989 3 H 0.089 0.911 4 N -0.299 5.299 5 C -0.026 4.026 6 C 0.034 3.966 7 C -0.545 4.545 8 H 0.069 0.931 9 C -0.167 4.167 10 N -0.533 5.533 11 Si 0.768 3.232 12 H -0.204 1.204 13 H -0.214 1.214 14 H -0.191 1.191 15 C -0.205 4.205 16 C -0.251 4.251 17 C -0.080 4.080 18 C -0.087 4.087 19 C -0.099 4.099 20 C -0.009 4.009 21 C -0.066 4.066 22 N -0.160 5.160 23 N -0.049 5.049 24 N -0.050 5.050 25 H 0.354 0.646 26 N -0.146 5.146 27 C -0.131 4.131 28 C 0.065 3.935 29 F -0.121 7.121 30 H 0.086 0.914 31 H 0.065 0.935 32 H 0.086 0.914 33 H 0.161 0.839 34 H 0.080 0.920 35 H 0.046 0.954 36 H 0.071 0.929 37 H 0.089 0.911 38 H 0.105 0.895 39 H 0.081 0.919 40 H 0.086 0.914 41 H 0.168 0.832 42 H 0.171 0.829 43 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 3.953 -5.297 -23.245 24.166 hybrid contribution -1.536 0.804 0.716 1.875 sum 2.417 -4.493 -22.529 23.099 Atomic orbital electron populations 1.22339 0.95337 1.02766 1.01995 1.20273 0.93397 0.96675 0.88575 0.91057 1.60553 1.54592 1.11079 1.03715 1.21392 1.01024 0.92229 0.87949 1.18984 0.85857 0.97427 0.94370 1.20775 1.00992 1.05529 1.27226 0.93118 1.25541 1.00086 0.95279 0.95825 1.70022 1.27132 1.09577 1.46617 0.85867 0.79111 0.79229 0.78970 1.20412 1.21355 1.19071 1.22638 1.04010 0.94472 0.99345 1.22974 1.08650 0.96055 0.97446 1.20142 0.99387 0.95322 0.93142 1.20943 0.96210 0.92547 0.98977 1.21360 0.96902 1.01317 0.90329 1.16935 1.02991 0.91875 0.89109 1.23557 1.01493 0.88904 0.92676 1.76095 1.15838 1.14861 1.09213 1.78872 1.15688 1.11126 0.99251 1.47788 1.39353 1.02409 1.15415 0.64565 1.74905 1.18489 1.18837 1.02391 1.20994 0.99998 0.93806 0.98313 1.17338 1.03264 0.78322 0.94532 1.91477 1.90919 1.32695 1.96993 0.91380 0.93453 0.91386 0.83911 0.91980 0.95430 0.92896 0.91079 0.89478 0.91917 0.91416 0.83216 0.82948 0.82737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.95 9.15 71.98 0.66 -4.29 16 2 C 0.12 3.85 2.58 44.17 0.11 3.96 16 3 H 0.07 2.47 7.30 -2.39 -0.02 2.45 16 4 N -0.67 -24.31 4.98 -495.44 -2.47 -26.77 16 5 C 0.10 4.56 5.28 86.30 0.46 5.02 16 6 C 0.03 1.64 1.97 -52.90 -0.10 1.53 16 7 C -0.51 -26.51 8.99 25.60 0.23 -26.28 16 8 H 0.05 2.67 7.88 -2.91 -0.02 2.65 16 9 C 0.03 1.73 5.04 84.65 0.43 2.16 16 10 N -0.90 -48.18 11.09 21.45 0.24 -47.95 16 11 Si 0.94 41.08 29.58 68.60 2.03 43.11 16 12 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 13 H -0.29 -12.47 7.11 99.48 0.71 -11.76 16 14 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 15 C -0.17 -7.08 9.73 30.60 0.30 -6.78 16 16 C -0.21 -9.76 9.89 30.62 0.30 -9.45 16 17 C -0.08 -2.13 5.06 -19.78 -0.10 -2.23 16 18 C -0.07 -1.70 9.31 22.23 0.21 -1.49 16 19 C -0.08 -1.74 9.70 22.48 0.22 -1.52 16 20 C -0.01 -0.13 5.88 -20.04 -0.12 -0.24 16 21 C 0.21 4.56 7.94 137.38 1.09 5.65 16 22 N -0.29 -6.42 12.23 -52.18 -0.64 -7.06 16 23 N -0.05 -0.96 13.47 37.02 0.50 -0.47 16 24 N -0.20 -2.34 7.90 37.02 0.29 -2.04 16 25 H 0.50 0.66 8.96 -347.53 -3.12 -2.45 16 26 N -0.29 -5.11 12.08 -52.13 -0.63 -5.74 16 27 C -0.11 -2.46 9.68 22.52 0.22 -2.24 16 28 C 0.09 2.21 7.23 22.34 0.16 2.37 16 29 F -0.14 -3.94 16.54 44.97 0.74 -3.20 16 30 H 0.07 1.88 8.13 -2.39 -0.02 1.86 16 31 H 0.05 1.62 7.74 -2.39 -0.02 1.60 16 32 H 0.07 1.82 8.14 -2.38 -0.02 1.80 16 33 H 0.34 12.56 8.02 -89.70 -0.72 11.84 16 34 H 0.06 3.10 4.94 -2.39 -0.01 3.09 16 35 H 0.03 1.24 7.66 -2.39 -0.02 1.22 16 36 H 0.26 13.54 8.32 -92.71 -0.77 12.77 16 37 H 0.07 2.95 8.14 -2.39 -0.02 2.93 16 38 H 0.09 3.45 8.14 -2.39 -0.02 3.43 16 39 H 0.06 2.96 8.14 -2.39 -0.02 2.94 16 40 H 0.07 2.96 8.03 -2.39 -0.02 2.94 16 41 H 0.15 3.69 6.96 -2.91 -0.02 3.67 16 42 H 0.15 2.97 7.89 -2.91 -0.02 2.95 16 43 H 0.15 2.95 7.88 -2.91 -0.02 2.92 16 Total: -1.00 -60.33 368.89 1.37 -58.97 By element: Atomic # 1 Polarization: 27.73 SS G_CDS: -2.76 Total: 24.98 kcal Atomic # 6 Polarization: -37.89 SS G_CDS: 4.06 Total: -33.83 kcal Atomic # 7 Polarization: -87.32 SS G_CDS: -2.71 Total: -90.03 kcal Atomic # 9 Polarization: -3.94 SS G_CDS: 0.74 Total: -3.20 kcal Atomic # 14 Polarization: 41.08 SS G_CDS: 2.03 Total: 43.11 kcal Total: -60.33 1.37 -58.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609123528.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 175.493 kcal (2) G-P(sol) polarization free energy of solvation -60.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.965 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds