Wall clock time and date at job start Tue Mar 31 2020 17:14:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.45201 * 109.46951 * 2 1 4 4 C 1.34229 * 116.99670 * 180.02562 * 3 2 1 5 5 O 1.20817 * 120.00210 * 359.97438 * 4 3 2 6 6 C 1.50702 * 119.99723 * 179.97438 * 4 3 2 7 7 H 1.09002 * 109.47152 * 60.00390 * 6 4 3 8 8 C 1.52995 * 109.47466 * 300.00059 * 6 4 3 9 9 C 1.53001 * 109.47209 * 179.97438 * 6 4 3 10 10 C 1.53500 * 114.20742 * 300.00392 * 9 6 4 11 11 N 1.47065 * 88.04823 * 220.37190 * 10 9 6 12 12 C 1.34770 * 136.05459 * 207.12201 * 11 10 9 13 13 O 1.21585 * 120.00505 * 357.12915 * 12 11 10 14 14 C 1.47642 * 119.99822 * 177.13023 * 12 11 10 15 15 C 1.40017 * 119.89573 * 7.97870 * 14 12 11 16 16 C 1.36313 * 120.10712 * 179.75705 * 15 14 12 17 17 C 1.40892 * 119.89271 * 0.52001 * 16 15 14 18 18 C 1.41108 * 120.10352 * 179.71801 * 17 16 15 19 19 H 1.08007 * 119.99764 * 214.77005 * 18 17 16 20 20 C 1.40227 * 120.00522 * 34.77041 * 18 17 16 21 21 N 1.30647 * 119.99588 * 355.64444 * 20 18 17 22 22 Si 1.86795 * 120.00007 * 175.64209 * 20 18 17 23 23 H 1.48498 * 109.46984 * 60.00319 * 22 20 18 24 24 H 1.48508 * 109.46727 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.47353 * 299.99750 * 22 20 18 26 26 C 1.40893 * 119.79082 * 359.73305 * 17 16 15 27 27 C 1.36313 * 119.89405 * 0.02562 * 26 17 16 28 28 C 1.47073 * 87.88491 * 27.09197 * 11 10 9 29 29 H 1.08993 * 109.47040 * 60.00058 * 1 2 3 30 30 H 1.08994 * 109.47033 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.46886 * 300.00264 * 1 2 3 32 32 H 1.08991 * 109.47198 * 239.99561 * 2 1 3 33 33 H 1.09004 * 109.46857 * 119.99207 * 2 1 3 34 34 H 1.09006 * 109.47347 * 179.97438 * 8 6 4 35 35 H 1.09000 * 109.46890 * 299.99875 * 8 6 4 36 36 H 1.08998 * 109.46955 * 60.00134 * 8 6 4 37 37 H 1.09000 * 113.41096 * 73.20290 * 9 6 4 38 38 H 1.08996 * 113.46783 * 105.55936 * 10 9 6 39 39 H 1.09006 * 113.46699 * 335.18079 * 10 9 6 40 40 H 1.07996 * 119.94515 * 0.02735 * 15 14 12 41 41 H 1.08004 * 120.05591 * 180.23216 * 16 15 14 42 42 H 0.96994 * 120.00154 * 180.02562 * 21 20 18 43 43 H 1.08004 * 120.04933 * 179.97438 * 26 17 16 44 44 H 1.07997 * 119.94977 * 180.02562 * 27 26 17 45 45 H 1.09001 * 113.46508 * 87.65986 * 28 11 10 46 46 H 1.08999 * 113.46123 * 218.04148 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0807 0.5867 -0.0005 6 6 3.9207 2.9374 -0.0012 7 1 3.5851 3.4698 0.8888 8 6 3.4487 3.6841 -1.2504 9 6 5.4486 2.8574 -0.0010 10 6 6.0405 2.1259 1.2117 11 7 7.0962 3.1490 1.2502 12 6 8.3741 3.2093 1.6740 13 8 8.8809 2.2463 2.2164 14 6 9.1588 4.4447 1.4798 15 6 8.5301 5.6042 1.0099 16 6 9.2494 6.7486 0.8337 17 6 10.6299 6.7605 1.1147 18 6 11.3800 7.9410 0.9282 19 1 12.4042 7.8824 0.5902 20 6 10.7959 9.1904 1.1817 21 7 9.5332 9.2669 1.5082 22 14 11.8232 10.7451 1.0527 23 1 12.3575 10.8723 -0.3270 24 1 10.9771 11.9248 1.3660 25 1 12.9512 10.6745 2.0159 26 6 11.2592 5.5898 1.5823 27 6 10.5306 4.4515 1.7601 28 6 6.1440 4.0772 0.6220 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5137 0.8901 34 1 3.8650 4.6915 -1.2506 35 1 3.7844 3.1517 -2.1403 36 1 2.3602 3.7411 -1.2500 37 1 5.8660 2.5456 -0.9585 38 1 6.4114 1.1280 0.9782 39 1 5.3905 2.1397 2.0867 40 1 7.4726 5.5930 0.7909 41 1 8.7628 7.6435 0.4747 42 1 9.1290 10.1310 1.6832 43 1 12.3174 5.5941 1.7987 44 1 11.0120 3.5538 2.1189 45 1 5.5210 4.6114 1.3394 46 1 6.6032 4.7391 -0.1122 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000874727850.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:14:54 Heat of formation + Delta-G solvation = -67.466959 kcal Electronic energy + Delta-G solvation = -27594.579443 eV Core-core repulsion = 23643.363423 eV Total energy + Delta-G solvation = -3951.216020 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.10116 -39.91983 -37.98261 -36.92894 -36.58210 -33.95867 -33.74991 -31.90764 -30.51328 -29.46935 -28.54368 -26.19834 -25.81839 -24.93136 -23.54120 -22.29250 -21.11994 -20.92205 -20.06298 -18.79640 -17.90286 -17.47344 -16.99392 -16.68897 -16.42875 -15.65953 -15.37053 -15.07927 -14.81122 -14.10428 -13.93443 -13.74456 -13.50195 -13.33483 -13.16121 -13.06235 -12.69462 -12.61521 -12.36977 -12.29208 -12.13845 -12.10310 -11.90611 -11.81147 -11.57891 -11.48925 -11.23818 -11.17869 -10.98207 -10.82552 -10.66381 -10.56127 -10.24958 -9.98922 -9.46781 -9.38074 -8.94006 -8.31225 -7.70962 -7.40080 -6.85698 -4.61515 2.01247 2.20937 2.36066 2.96237 2.97644 3.00592 3.02501 3.31481 3.78311 3.86718 4.12842 4.42042 4.48164 4.57403 4.62647 4.63793 4.81679 4.91338 4.93788 5.05620 5.27899 5.32747 5.40000 5.44269 5.48763 5.53002 5.55577 5.58957 5.61173 5.65922 5.85569 5.92608 6.12902 6.17294 6.25504 6.31717 6.42185 6.78666 6.90079 7.04105 7.17417 7.49504 7.54904 7.66842 7.84073 7.89831 8.11038 8.29797 8.45389 8.68571 8.77527 9.00654 10.03084 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.021178 B = 0.002300 C = 0.002110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.826751 B =12169.707262 C =13269.128932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.060 3.940 3 O -0.359 6.359 4 C 0.465 3.535 5 O -0.499 6.499 6 C -0.070 4.070 7 H 0.114 0.886 8 C -0.144 4.144 9 C -0.116 4.116 10 C 0.118 3.882 11 N -0.650 5.650 12 C 0.600 3.400 13 O -0.569 6.569 14 C -0.264 4.264 15 C -0.083 4.083 16 C -0.167 4.167 17 C 0.125 3.875 18 C -0.450 4.450 19 H 0.081 0.919 20 C 0.070 3.930 21 N -0.794 5.794 22 Si 0.920 3.080 23 H -0.263 1.263 24 H -0.277 1.277 25 H -0.264 1.264 26 C -0.227 4.227 27 C -0.032 4.032 28 C 0.106 3.894 29 H 0.066 0.934 30 H 0.078 0.922 31 H 0.066 0.934 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.078 0.922 35 H 0.062 0.938 36 H 0.069 0.931 37 H 0.112 0.888 38 H 0.080 0.920 39 H 0.071 0.929 40 H 0.106 0.894 41 H 0.131 0.869 42 H 0.283 0.717 43 H 0.099 0.901 44 H 0.101 0.899 45 H 0.084 0.916 46 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.198 -7.305 -5.312 20.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.013 4.013 3 O -0.276 6.276 4 C 0.307 3.693 5 O -0.385 6.385 6 C -0.090 4.090 7 H 0.132 0.868 8 C -0.201 4.201 9 C -0.135 4.135 10 C -0.005 4.005 11 N -0.386 5.386 12 C 0.399 3.601 13 O -0.450 6.450 14 C -0.268 4.268 15 C -0.102 4.102 16 C -0.187 4.187 17 C 0.122 3.878 18 C -0.479 4.479 19 H 0.099 0.901 20 C -0.148 4.148 21 N -0.419 5.419 22 Si 0.744 3.256 23 H -0.188 1.188 24 H -0.202 1.202 25 H -0.188 1.188 26 C -0.246 4.246 27 C -0.052 4.052 28 C -0.018 4.018 29 H 0.085 0.915 30 H 0.097 0.903 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.088 0.912 34 H 0.097 0.903 35 H 0.081 0.919 36 H 0.088 0.912 37 H 0.130 0.870 38 H 0.098 0.902 39 H 0.089 0.911 40 H 0.123 0.877 41 H 0.149 0.851 42 H 0.094 0.906 43 H 0.118 0.882 44 H 0.119 0.881 45 H 0.102 0.898 46 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -17.657 -7.948 -4.872 19.967 hybrid contribution 0.323 0.561 0.195 0.676 sum -17.334 -7.387 -4.677 19.414 Atomic orbital electron populations 1.21805 0.92643 1.02958 1.03532 1.23023 0.95329 0.80321 1.02663 1.86503 1.24700 1.32290 1.84104 1.23780 0.80464 0.92733 0.72335 1.90695 1.60267 1.43053 1.44518 1.21036 0.94936 0.90083 1.02938 0.86799 1.21766 1.02123 1.00933 0.95272 1.23024 0.91264 0.98796 1.00386 1.22766 0.87482 0.94752 0.95548 1.49361 1.10055 1.15345 1.63840 1.18255 0.78239 0.88098 0.75558 1.90656 1.69828 1.39462 1.45076 1.18928 0.94389 0.92950 1.20568 1.21139 0.98428 0.92996 0.97629 1.21289 0.95265 0.97094 1.05008 1.17875 0.92529 0.91673 0.85752 1.19718 0.99431 0.90155 1.38632 0.90081 1.26033 0.95131 1.01155 0.92472 1.69664 1.11770 1.27517 1.32957 0.86163 0.80187 0.79254 0.79973 1.18762 1.20171 1.18818 1.20853 0.99047 0.94556 1.10172 1.20393 0.92385 0.96952 0.95420 1.23200 0.89116 0.93362 0.96107 0.91470 0.90290 0.91448 0.91250 0.91204 0.90293 0.91906 0.91164 0.87005 0.90165 0.91093 0.87651 0.85103 0.90559 0.88235 0.88082 0.89831 0.88741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.78 10.29 37.16 0.38 -0.39 16 2 C 0.06 0.46 6.19 37.16 0.23 0.69 16 3 O -0.36 -3.37 10.12 -39.25 -0.40 -3.77 16 4 C 0.46 4.94 7.07 36.01 0.25 5.19 16 5 O -0.50 -6.77 14.63 -18.74 -0.27 -7.04 16 6 C -0.07 -0.61 2.65 -91.77 -0.24 -0.86 16 7 H 0.11 0.82 7.89 -51.93 -0.41 0.41 16 8 C -0.14 -0.98 9.13 37.16 0.34 -0.65 16 9 C -0.12 -1.32 3.07 -90.04 -0.28 -1.60 16 10 C 0.12 1.74 6.76 -8.50 -0.06 1.69 16 11 N -0.65 -11.68 3.68 -186.20 -0.69 -12.36 16 12 C 0.60 13.62 7.99 -12.42 -0.10 13.52 16 13 O -0.57 -14.56 17.13 5.29 0.09 -14.47 16 14 C -0.26 -6.21 5.89 -104.72 -0.62 -6.82 16 15 C -0.08 -1.86 9.10 -39.61 -0.36 -2.22 16 16 C -0.17 -4.09 8.61 -39.27 -0.34 -4.43 16 17 C 0.12 3.20 5.55 -106.80 -0.59 2.61 16 18 C -0.45 -11.31 9.03 -37.75 -0.34 -11.65 16 19 H 0.08 1.94 7.85 -52.48 -0.41 1.53 16 20 C 0.07 1.66 5.42 -17.31 -0.09 1.56 16 21 N -0.79 -19.19 10.59 55.56 0.59 -18.60 16 22 Si 0.92 17.71 29.56 -169.99 -5.03 12.68 16 23 H -0.26 -4.98 7.11 56.52 0.40 -4.58 16 24 H -0.28 -5.18 7.11 56.52 0.40 -4.78 16 25 H -0.26 -5.09 7.11 56.52 0.40 -4.69 16 26 C -0.23 -5.55 9.73 -39.27 -0.38 -5.93 16 27 C -0.03 -0.78 9.52 -39.61 -0.38 -1.16 16 28 C 0.11 1.38 6.05 -8.44 -0.05 1.33 16 29 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 30 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.07 0.53 8.13 -51.93 -0.42 0.11 16 33 H 0.07 0.55 8.13 -51.93 -0.42 0.13 16 34 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.07 0.43 8.11 -51.93 -0.42 0.00 16 37 H 0.11 1.31 8.14 -51.93 -0.42 0.89 16 38 H 0.08 1.33 7.99 -51.93 -0.41 0.91 16 39 H 0.07 0.96 8.10 -51.93 -0.42 0.54 16 40 H 0.11 1.97 3.83 -52.49 -0.20 1.77 16 41 H 0.13 3.25 6.13 -52.48 -0.32 2.93 16 42 H 0.28 6.22 8.29 -40.82 -0.34 5.89 16 43 H 0.10 2.27 8.06 -52.48 -0.42 1.84 16 44 H 0.10 2.36 7.65 -52.49 -0.40 1.96 16 45 H 0.08 0.94 7.93 -51.93 -0.41 0.53 16 46 H 0.09 1.25 6.15 -51.93 -0.32 0.93 16 LS Contribution 382.23 15.07 5.76 5.76 Total: -1.00 -31.59 382.23 -9.24 -40.83 By element: Atomic # 1 Polarization: 12.75 SS G_CDS: -6.67 Total: 6.08 kcal Atomic # 6 Polarization: -6.48 SS G_CDS: -2.62 Total: -9.11 kcal Atomic # 7 Polarization: -30.86 SS G_CDS: -0.10 Total: -30.96 kcal Atomic # 8 Polarization: -24.71 SS G_CDS: -0.58 Total: -25.29 kcal Atomic # 14 Polarization: 17.71 SS G_CDS: -5.03 Total: 12.68 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -31.59 -9.24 -40.83 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000874727850.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.637 kcal (2) G-P(sol) polarization free energy of solvation -31.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds