Wall clock time and date at job start Tue Mar 31 2020 17:14:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.45201 * 109.46951 * 2 1 4 4 C 1.34229 * 116.99670 * 180.02562 * 3 2 1 5 5 O 1.20817 * 120.00210 * 359.97438 * 4 3 2 6 6 C 1.50702 * 119.99723 * 179.97438 * 4 3 2 7 7 H 1.09002 * 109.47152 * 60.00390 * 6 4 3 8 8 C 1.52995 * 109.47466 * 300.00059 * 6 4 3 9 9 C 1.53001 * 109.47209 * 179.97438 * 6 4 3 10 10 C 1.53500 * 114.20742 * 300.00392 * 9 6 4 11 11 N 1.47065 * 88.04823 * 220.37190 * 10 9 6 12 12 C 1.34770 * 136.05459 * 207.12201 * 11 10 9 13 13 O 1.21585 * 120.00505 * 357.12915 * 12 11 10 14 14 C 1.47642 * 119.99822 * 177.13023 * 12 11 10 15 15 C 1.40017 * 119.89573 * 7.97870 * 14 12 11 16 16 C 1.36313 * 120.10712 * 179.75705 * 15 14 12 17 17 C 1.40892 * 119.89271 * 0.52001 * 16 15 14 18 18 C 1.41108 * 120.10352 * 179.71801 * 17 16 15 19 19 H 1.08007 * 119.99764 * 214.77005 * 18 17 16 20 20 C 1.40227 * 120.00522 * 34.77041 * 18 17 16 21 21 N 1.30647 * 119.99588 * 355.64444 * 20 18 17 22 22 Si 1.86795 * 120.00007 * 175.64209 * 20 18 17 23 23 H 1.48498 * 109.46984 * 60.00319 * 22 20 18 24 24 H 1.48508 * 109.46727 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.47353 * 299.99750 * 22 20 18 26 26 C 1.40893 * 119.79082 * 359.73305 * 17 16 15 27 27 C 1.36313 * 119.89405 * 0.02562 * 26 17 16 28 28 C 1.47073 * 87.88491 * 27.09197 * 11 10 9 29 29 H 1.08993 * 109.47040 * 60.00058 * 1 2 3 30 30 H 1.08994 * 109.47033 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.46886 * 300.00264 * 1 2 3 32 32 H 1.08991 * 109.47198 * 239.99561 * 2 1 3 33 33 H 1.09004 * 109.46857 * 119.99207 * 2 1 3 34 34 H 1.09006 * 109.47347 * 179.97438 * 8 6 4 35 35 H 1.09000 * 109.46890 * 299.99875 * 8 6 4 36 36 H 1.08998 * 109.46955 * 60.00134 * 8 6 4 37 37 H 1.09000 * 113.41096 * 73.20290 * 9 6 4 38 38 H 1.08996 * 113.46783 * 105.55936 * 10 9 6 39 39 H 1.09006 * 113.46699 * 335.18079 * 10 9 6 40 40 H 1.07996 * 119.94515 * 0.02735 * 15 14 12 41 41 H 1.08004 * 120.05591 * 180.23216 * 16 15 14 42 42 H 0.96994 * 120.00154 * 180.02562 * 21 20 18 43 43 H 1.08004 * 120.04933 * 179.97438 * 26 17 16 44 44 H 1.07997 * 119.94977 * 180.02562 * 27 26 17 45 45 H 1.09001 * 113.46508 * 87.65986 * 28 11 10 46 46 H 1.08999 * 113.46123 * 218.04148 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0807 0.5867 -0.0005 6 6 3.9207 2.9374 -0.0012 7 1 3.5851 3.4698 0.8888 8 6 3.4487 3.6841 -1.2504 9 6 5.4486 2.8574 -0.0010 10 6 6.0405 2.1259 1.2117 11 7 7.0962 3.1490 1.2502 12 6 8.3741 3.2093 1.6740 13 8 8.8809 2.2463 2.2164 14 6 9.1588 4.4447 1.4798 15 6 8.5301 5.6042 1.0099 16 6 9.2494 6.7486 0.8337 17 6 10.6299 6.7605 1.1147 18 6 11.3800 7.9410 0.9282 19 1 12.4042 7.8824 0.5902 20 6 10.7959 9.1904 1.1817 21 7 9.5332 9.2669 1.5082 22 14 11.8232 10.7451 1.0527 23 1 12.3575 10.8723 -0.3270 24 1 10.9771 11.9248 1.3660 25 1 12.9512 10.6745 2.0159 26 6 11.2592 5.5898 1.5823 27 6 10.5306 4.4515 1.7601 28 6 6.1440 4.0772 0.6220 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5137 0.8901 34 1 3.8650 4.6915 -1.2506 35 1 3.7844 3.1517 -2.1403 36 1 2.3602 3.7411 -1.2500 37 1 5.8660 2.5456 -0.9585 38 1 6.4114 1.1280 0.9782 39 1 5.3905 2.1397 2.0867 40 1 7.4726 5.5930 0.7909 41 1 8.7628 7.6435 0.4747 42 1 9.1290 10.1310 1.6832 43 1 12.3174 5.5941 1.7987 44 1 11.0120 3.5538 2.1189 45 1 5.5210 4.6114 1.3394 46 1 6.6032 4.7391 -0.1122 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000874727850.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:14:53 Heat of formation + Delta-G solvation = -84.324257 kcal Electronic energy + Delta-G solvation = -27595.310430 eV Core-core repulsion = 23643.363423 eV Total energy + Delta-G solvation = -3951.947008 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.09466 -41.12710 -39.57211 -38.55859 -37.58587 -35.59074 -34.82932 -32.54525 -32.18715 -31.33657 -29.92285 -27.61562 -27.14410 -25.81801 -24.49018 -23.40899 -22.74897 -22.47317 -20.99155 -20.30154 -19.33795 -18.69332 -18.07996 -17.82823 -17.54006 -17.28272 -16.75677 -16.44526 -15.84922 -15.46929 -15.10281 -15.06004 -14.90948 -14.52875 -14.49133 -14.22552 -13.74819 -13.71815 -13.63202 -13.45977 -13.27664 -13.20311 -13.08045 -12.88679 -12.81790 -12.64320 -12.47629 -12.47227 -12.33770 -12.03749 -11.81152 -11.68243 -11.48791 -11.33982 -11.17019 -11.09372 -10.64781 -9.78971 -9.57627 -9.26348 -8.63597 -6.50810 0.39190 1.12285 1.20071 1.41793 1.45603 1.53138 1.62871 1.93208 2.10124 2.20949 2.80192 3.17221 3.55011 3.61246 3.69205 3.86494 4.02494 4.05436 4.09409 4.12764 4.27687 4.33664 4.38335 4.40108 4.42681 4.52423 4.57317 4.69263 4.84671 4.87900 4.94185 4.95210 4.99110 5.04033 5.08893 5.17540 5.18132 5.21001 5.32936 5.38449 5.51709 5.63046 5.82187 5.97591 6.02260 6.24739 6.57830 6.74388 6.75493 6.81802 6.89898 7.29236 8.27655 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.021178 B = 0.002300 C = 0.002110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.826751 B =12169.707262 C =13269.128932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.052 3.948 3 O -0.356 6.356 4 C 0.465 3.535 5 O -0.536 6.536 6 C -0.063 4.063 7 H 0.140 0.860 8 C -0.140 4.140 9 C -0.091 4.091 10 C 0.111 3.889 11 N -0.657 5.657 12 C 0.593 3.407 13 O -0.612 6.612 14 C -0.275 4.275 15 C -0.072 4.072 16 C -0.183 4.183 17 C 0.096 3.904 18 C -0.480 4.480 19 H 0.081 0.919 20 C 0.033 3.967 21 N -0.816 5.816 22 Si 0.992 3.008 23 H -0.257 1.257 24 H -0.264 1.264 25 H -0.265 1.265 26 C -0.239 4.239 27 C -0.045 4.045 28 C 0.102 3.898 29 H 0.071 0.929 30 H 0.095 0.905 31 H 0.069 0.931 32 H 0.066 0.934 33 H 0.064 0.936 34 H 0.092 0.908 35 H 0.057 0.943 36 H 0.082 0.918 37 H 0.108 0.892 38 H 0.056 0.944 39 H 0.089 0.911 40 H 0.143 0.857 41 H 0.127 0.873 42 H 0.293 0.707 43 H 0.106 0.894 44 H 0.099 0.901 45 H 0.116 0.884 46 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.699 -5.617 -5.951 22.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.021 4.021 3 O -0.273 6.273 4 C 0.309 3.691 5 O -0.425 6.425 6 C -0.082 4.082 7 H 0.158 0.842 8 C -0.198 4.198 9 C -0.110 4.110 10 C -0.011 4.011 11 N -0.390 5.390 12 C 0.390 3.610 13 O -0.497 6.497 14 C -0.279 4.279 15 C -0.090 4.090 16 C -0.203 4.203 17 C 0.094 3.906 18 C -0.509 4.509 19 H 0.100 0.900 20 C -0.183 4.183 21 N -0.441 5.441 22 Si 0.812 3.188 23 H -0.181 1.181 24 H -0.188 1.188 25 H -0.189 1.189 26 C -0.259 4.259 27 C -0.065 4.065 28 C -0.020 4.020 29 H 0.090 0.910 30 H 0.114 0.886 31 H 0.088 0.912 32 H 0.084 0.916 33 H 0.082 0.918 34 H 0.111 0.889 35 H 0.077 0.923 36 H 0.101 0.899 37 H 0.126 0.874 38 H 0.075 0.925 39 H 0.107 0.893 40 H 0.161 0.839 41 H 0.145 0.855 42 H 0.104 0.896 43 H 0.124 0.876 44 H 0.117 0.883 45 H 0.134 0.866 46 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -20.239 -6.255 -5.540 21.896 hybrid contribution 0.970 -0.078 0.385 1.047 sum -19.269 -6.333 -5.155 20.928 Atomic orbital electron populations 1.21813 0.90438 1.04203 1.03831 1.23246 0.97053 0.79518 1.02291 1.86503 1.23920 1.33266 1.83608 1.24151 0.80662 0.93025 0.71238 1.90698 1.61073 1.44371 1.46379 1.21062 0.92390 0.89494 1.05267 0.84229 1.21788 1.03014 1.01149 0.93803 1.22807 0.93290 0.96326 0.98553 1.23026 0.86716 0.93379 0.98024 1.49420 1.09424 1.18053 1.62124 1.18128 0.79893 0.87213 0.75736 1.90616 1.71382 1.40511 1.47223 1.19201 0.94419 0.94022 1.20265 1.21441 1.00105 0.91574 0.95883 1.21325 0.95135 0.97705 1.06087 1.18242 0.93586 0.92293 0.86529 1.19975 0.99788 0.91115 1.40013 0.90048 1.26875 0.96283 1.03711 0.91479 1.69692 1.12980 1.28905 1.32497 0.85092 0.78419 0.75273 0.80015 1.18119 1.18847 1.18923 1.20974 0.99531 0.94643 1.10706 1.20530 0.93252 0.96848 0.95845 1.23537 0.88168 0.93616 0.96651 0.91018 0.88615 0.91223 0.91560 0.91780 0.88880 0.92347 0.89874 0.87408 0.92534 0.89337 0.83940 0.85500 0.89585 0.87626 0.88256 0.86639 0.88391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 10.29 71.98 0.74 -0.44 16 2 C 0.05 0.74 6.19 71.98 0.45 1.18 16 3 O -0.36 -5.97 10.12 -51.40 -0.52 -6.49 16 4 C 0.47 9.03 7.07 71.24 0.50 9.53 16 5 O -0.54 -14.24 14.63 21.99 0.32 -13.92 16 6 C -0.06 -0.89 2.65 -11.54 -0.03 -0.92 16 7 H 0.14 1.36 7.89 -2.39 -0.02 1.34 16 8 C -0.14 -1.42 9.13 71.98 0.66 -0.76 16 9 C -0.09 -1.87 3.07 -10.42 -0.03 -1.90 16 10 C 0.11 3.18 6.76 83.18 0.56 3.74 16 11 N -0.66 -22.97 3.68 -861.28 -3.17 -26.15 16 12 C 0.59 27.20 7.99 86.73 0.69 27.89 16 13 O -0.61 -32.33 17.13 -3.98 -0.07 -32.40 16 14 C -0.27 -13.06 5.89 -19.93 -0.12 -13.18 16 15 C -0.07 -3.15 9.10 22.25 0.20 -2.95 16 16 C -0.18 -9.00 8.61 22.47 0.19 -8.81 16 17 C 0.10 5.05 5.55 -21.28 -0.12 4.94 16 18 C -0.48 -24.45 9.03 23.46 0.21 -24.24 16 19 H 0.08 3.98 7.85 -2.91 -0.02 3.96 16 20 C 0.03 1.52 5.42 85.35 0.46 1.99 16 21 N -0.82 -38.91 10.59 21.87 0.23 -38.68 16 22 Si 0.99 35.44 29.56 68.60 2.03 37.47 16 23 H -0.26 -8.88 7.11 99.48 0.71 -8.18 16 24 H -0.26 -8.84 7.11 99.48 0.71 -8.13 16 25 H -0.26 -9.45 7.11 99.48 0.71 -8.74 16 26 C -0.24 -12.09 9.73 22.47 0.22 -11.88 16 27 C -0.05 -2.27 9.52 22.25 0.21 -2.06 16 28 C 0.10 2.37 6.05 83.22 0.50 2.87 16 29 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 30 H 0.10 0.47 8.14 -2.39 -0.02 0.45 16 31 H 0.07 0.55 8.14 -2.38 -0.02 0.53 16 32 H 0.07 0.97 8.13 -2.39 -0.02 0.95 16 33 H 0.06 0.97 8.13 -2.39 -0.02 0.95 16 34 H 0.09 0.73 8.14 -2.38 -0.02 0.71 16 35 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 36 H 0.08 0.68 8.11 -2.39 -0.02 0.66 16 37 H 0.11 2.36 8.14 -2.39 -0.02 2.34 16 38 H 0.06 1.90 7.99 -2.39 -0.02 1.88 16 39 H 0.09 2.25 8.10 -2.38 -0.02 2.23 16 40 H 0.14 5.01 3.83 -2.91 -0.01 5.00 16 41 H 0.13 6.29 6.13 -2.91 -0.02 6.27 16 42 H 0.29 12.52 8.29 -92.71 -0.77 11.75 16 43 H 0.11 5.01 8.06 -2.91 -0.02 4.99 16 44 H 0.10 4.87 7.65 -2.91 -0.02 4.85 16 45 H 0.12 2.06 7.93 -2.39 -0.02 2.04 16 46 H 0.10 2.28 6.15 -2.39 -0.01 2.26 16 Total: -1.00 -71.01 382.23 5.12 -65.89 By element: Atomic # 1 Polarization: 28.26 SS G_CDS: 0.99 Total: 29.25 kcal Atomic # 6 Polarization: -20.29 SS G_CDS: 5.31 Total: -14.98 kcal Atomic # 7 Polarization: -61.88 SS G_CDS: -2.94 Total: -64.82 kcal Atomic # 8 Polarization: -52.54 SS G_CDS: -0.27 Total: -52.81 kcal Atomic # 14 Polarization: 35.44 SS G_CDS: 2.03 Total: 37.47 kcal Total: -71.01 5.12 -65.89 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000874727850.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.433 kcal (2) G-P(sol) polarization free energy of solvation -71.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds