Wall clock time and date at job start Tue Mar 31 2020 16:38:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.42905 * 114.00109 * 2 1 4 4 C 1.52997 * 109.47072 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.47307 * 65.00397 * 4 3 2 6 6 C 1.46507 * 119.99719 * 274.99789 * 5 4 3 7 7 C 1.52993 * 109.47117 * 274.99712 * 6 5 4 8 8 H 1.09005 * 109.64298 * 55.42180 * 7 6 5 9 9 C 1.53027 * 109.64229 * 294.99988 * 7 6 5 10 10 C 1.50069 * 110.14385 * 190.87735 * 9 7 6 11 11 C 1.29438 * 124.08159 * 17.13379 * 10 9 7 12 12 C 1.50071 * 124.07093 * 359.50707 * 11 10 9 13 13 C 1.53037 * 110.14081 * 17.16626 * 12 11 10 14 14 S 1.65601 * 120.00577 * 94.99571 * 5 4 3 15 15 O 1.42096 * 104.27862 * 153.93319 * 14 5 4 16 16 O 1.42105 * 104.27565 * 26.06975 * 14 5 4 17 17 C 1.81399 * 104.44935 * 270.00333 * 14 5 4 18 18 C 1.53002 * 109.47165 * 179.97438 * 17 14 5 19 19 C 1.50706 * 109.46931 * 179.97438 * 18 17 14 20 20 H 1.07999 * 120.00193 * 0.02562 * 19 18 17 21 21 C 1.37879 * 119.99398 * 180.02562 * 19 18 17 22 22 N 1.31514 * 120.00338 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99424 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.46845 * 180.02562 * 23 21 19 25 25 H 1.48503 * 109.47399 * 299.99813 * 23 21 19 26 26 H 1.48498 * 109.47295 * 60.00420 * 23 21 19 27 27 H 1.09008 * 109.47039 * 299.99718 * 1 2 3 28 28 H 1.08994 * 109.47732 * 59.99649 * 1 2 3 29 29 H 1.09000 * 109.47159 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47039 * 60.00043 * 3 2 1 31 31 H 1.09000 * 109.46970 * 300.00514 * 3 2 1 32 32 H 1.09001 * 109.47403 * 305.00115 * 4 3 2 33 33 H 1.09003 * 109.46982 * 184.99969 * 4 3 2 34 34 H 1.09004 * 109.46982 * 35.00015 * 6 5 4 35 35 H 1.09000 * 109.46871 * 154.99901 * 6 5 4 36 36 H 1.08994 * 109.36163 * 311.08527 * 9 7 6 37 37 H 1.09004 * 109.35413 * 70.81152 * 9 7 6 38 38 H 1.08010 * 117.95890 * 197.15604 * 10 9 7 39 39 H 1.07994 * 117.96639 * 179.52907 * 11 10 9 40 40 H 1.09001 * 109.36167 * 137.36486 * 12 11 10 41 41 H 1.09000 * 109.35563 * 257.08152 * 12 11 10 42 42 H 1.08999 * 109.63392 * 190.85883 * 13 12 11 43 43 H 1.08997 * 109.66049 * 70.22666 * 13 12 11 44 44 H 1.09004 * 109.47568 * 59.99655 * 17 14 5 45 45 H 1.09004 * 109.47089 * 299.99644 * 17 14 5 46 46 H 1.09000 * 109.46986 * 60.00120 * 18 17 14 47 47 H 1.08992 * 109.46974 * 300.00184 * 18 17 14 48 48 H 0.97000 * 119.99706 * 359.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 3.9756 0.5645 -1.2527 6 6 4.0003 -0.8950 -1.3782 7 6 5.3191 -1.4326 -0.8192 8 1 5.4488 -1.0899 0.2074 9 6 6.4832 -0.9347 -1.6787 10 6 7.7448 -1.6586 -1.3096 11 6 7.7762 -2.7667 -0.6412 12 6 6.5558 -3.4768 -0.1330 13 6 5.3086 -2.9660 -0.8580 14 16 4.4453 1.5130 -2.5263 15 8 5.3409 0.6920 -3.2632 16 8 4.8877 2.7198 -1.9201 17 6 2.9202 1.7953 -3.4671 18 6 3.2263 2.6706 -4.6841 19 6 1.9593 2.9045 -5.4660 20 1 1.0288 2.4725 -5.1284 21 6 1.9882 3.6701 -6.6123 22 7 3.1214 4.1957 -7.0237 23 14 0.4177 3.9606 -7.5811 24 1 0.7150 4.8091 -8.7631 25 1 -0.1331 2.6579 -8.0335 26 1 -0.5772 4.6456 -6.7173 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.6886 1.8464 0.8900 31 1 1.6885 1.8464 -0.8899 32 1 3.8514 0.5682 0.8409 33 1 3.9785 2.1765 0.0889 34 1 3.1677 -1.3219 -0.8190 35 1 3.9117 -1.1708 -2.4290 36 1 6.2584 -1.1136 -2.7301 37 1 6.6213 0.1342 -1.5156 38 1 8.6852 -1.2280 -1.6206 39 1 8.7406 -3.2073 -0.4363 40 1 6.6618 -4.5475 -0.3073 41 1 6.4504 -3.2937 0.9364 42 1 4.4153 -3.3391 -0.3573 43 1 5.3211 -3.3064 -1.8934 44 1 2.1898 2.2979 -2.8330 45 1 2.5160 0.8390 -3.7993 46 1 3.9567 2.1683 -5.3184 47 1 3.6303 3.6267 -4.3516 48 1 3.9368 4.0451 -6.5204 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359977621.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:38:28 Heat of formation + Delta-G solvation = -122.626481 kcal Electronic energy + Delta-G solvation = -28204.377029 eV Core-core repulsion = 24386.213063 eV Total energy + Delta-G solvation = -3818.163966 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.165 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -39.08147 -38.11115 -36.70477 -35.88334 -35.46029 -34.26082 -31.96928 -31.04937 -30.69352 -29.24500 -26.57406 -25.30130 -25.10135 -23.14711 -22.73888 -21.71928 -20.92214 -18.53970 -18.21685 -17.36708 -16.78292 -16.64962 -16.40427 -16.15445 -15.58108 -15.47285 -15.12097 -14.59012 -14.38214 -13.80458 -13.62642 -13.56680 -13.32890 -13.09884 -12.88312 -12.80765 -12.44909 -12.33407 -12.29723 -12.14408 -11.98612 -11.87793 -11.62552 -11.46120 -11.16376 -11.10921 -11.03092 -10.60393 -10.57158 -10.51045 -10.48230 -10.22405 -10.13084 -10.03446 -9.76424 -8.96761 -8.89020 -8.59345 -8.47250 -6.48623 -4.21390 0.68793 2.35450 2.95673 3.37177 3.39044 3.58295 3.64465 4.21267 4.45790 4.51486 4.58842 4.70832 4.82705 4.85279 4.94329 5.11661 5.16840 5.26012 5.26750 5.28331 5.32174 5.34243 5.39148 5.46168 5.50481 5.53291 5.58543 5.61034 5.70622 5.76752 5.81359 5.83897 5.96209 6.05567 6.12364 6.24342 6.30385 6.34637 6.57377 6.69738 6.73193 6.95774 7.01089 7.05255 7.06388 7.95588 8.28438 8.71587 9.50896 10.91142 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.012611 B = 0.003821 C = 0.003275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2219.730334 B = 7326.696071 C = 8547.036527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.384 6.384 3 C 0.034 3.966 4 C 0.120 3.880 5 N -0.996 5.996 6 C 0.132 3.868 7 C -0.104 4.104 8 H 0.072 0.928 9 C -0.089 4.089 10 C -0.140 4.140 11 C -0.176 4.176 12 C -0.085 4.085 13 C -0.113 4.113 14 S 2.583 3.417 15 O -0.954 6.954 16 O -0.968 6.968 17 C -0.585 4.585 18 C 0.016 3.984 19 C -0.600 4.600 20 H 0.054 0.946 21 C 0.016 3.984 22 N -0.905 5.905 23 Si 1.072 2.928 24 H -0.280 1.280 25 H -0.286 1.286 26 H -0.287 1.287 27 H 0.038 0.962 28 H 0.043 0.957 29 H 0.084 0.916 30 H 0.060 0.940 31 H 0.054 0.946 32 H 0.088 0.912 33 H 0.108 0.892 34 H 0.091 0.909 35 H 0.078 0.922 36 H 0.103 0.897 37 H 0.063 0.937 38 H 0.098 0.902 39 H 0.096 0.904 40 H 0.067 0.933 41 H 0.068 0.932 42 H 0.066 0.934 43 H 0.067 0.933 44 H 0.116 0.884 45 H 0.120 0.880 46 H 0.024 0.976 47 H 0.022 0.978 48 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.079 -13.133 17.457 21.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.302 6.302 3 C -0.044 4.044 4 C -0.007 4.007 5 N -0.831 5.831 6 C 0.006 3.994 7 C -0.124 4.124 8 H 0.090 0.910 9 C -0.127 4.127 10 C -0.158 4.158 11 C -0.194 4.194 12 C -0.122 4.122 13 C -0.151 4.151 14 S 2.681 3.319 15 O -0.944 6.944 16 O -0.958 6.958 17 C -0.718 4.718 18 C -0.023 4.023 19 C -0.639 4.639 20 H 0.072 0.928 21 C -0.189 4.189 22 N -0.540 5.540 23 Si 0.900 3.100 24 H -0.205 1.205 25 H -0.213 1.213 26 H -0.213 1.213 27 H 0.057 0.943 28 H 0.062 0.938 29 H 0.102 0.898 30 H 0.078 0.922 31 H 0.072 0.928 32 H 0.106 0.894 33 H 0.126 0.874 34 H 0.109 0.891 35 H 0.096 0.904 36 H 0.121 0.879 37 H 0.082 0.918 38 H 0.117 0.883 39 H 0.114 0.886 40 H 0.085 0.915 41 H 0.086 0.914 42 H 0.084 0.916 43 H 0.086 0.914 44 H 0.134 0.866 45 H 0.138 0.862 46 H 0.042 0.958 47 H 0.040 0.960 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.493 -12.251 15.994 20.153 hybrid contribution -0.251 -0.590 1.378 1.520 sum 0.242 -12.841 17.372 21.604 Atomic orbital electron populations 1.22753 0.81329 1.02606 1.00087 1.87870 1.19414 1.27543 1.95409 1.23240 0.94869 0.85306 1.00986 1.21396 0.91547 1.00293 0.87421 1.57593 1.82801 1.15907 1.26751 1.21378 0.97405 0.78584 1.01983 1.21627 0.95435 0.95184 1.00123 0.90950 1.20784 0.91502 0.98859 1.01509 1.22255 0.99151 0.96303 0.98131 1.21946 0.98397 0.97476 1.01607 1.20384 0.93065 0.99149 0.99629 1.21592 0.97499 0.94864 1.01173 1.05896 0.78083 0.73522 0.74359 1.93581 1.60815 1.67263 1.72767 1.93523 1.80320 1.46710 1.75256 1.30437 1.18989 1.10018 1.12343 1.19053 0.99662 0.93346 0.90220 1.21833 0.93865 1.36505 1.11694 0.92779 1.25964 1.03610 0.93240 0.96045 1.70784 0.99815 1.42422 1.40988 0.83497 0.73783 0.76551 0.76205 1.20506 1.21274 1.21316 0.94306 0.93817 0.89776 0.92180 0.92808 0.89407 0.87410 0.89115 0.90384 0.87893 0.91801 0.88348 0.88570 0.91451 0.91376 0.91565 0.91430 0.86604 0.86175 0.95786 0.95961 0.91936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 11.01 101.05 1.11 1.37 16 2 O -0.38 -4.26 9.02 -35.23 -0.32 -4.58 16 3 C 0.03 0.37 6.28 37.16 0.23 0.60 16 4 C 0.12 1.36 6.11 -4.04 -0.02 1.34 16 5 N -1.00 -13.47 2.48 -114.38 -0.28 -13.75 16 6 C 0.13 1.60 4.80 -4.04 -0.02 1.58 16 7 C -0.10 -1.22 2.45 -90.41 -0.22 -1.44 16 8 H 0.07 0.83 8.08 -51.93 -0.42 0.41 16 9 C -0.09 -1.27 3.69 -28.17 -0.10 -1.37 16 10 C -0.14 -1.78 9.80 -35.90 -0.35 -2.13 16 11 C -0.18 -1.93 9.80 -35.90 -0.35 -2.28 16 12 C -0.09 -0.80 6.12 -28.17 -0.17 -0.97 16 13 C -0.11 -1.13 5.31 -26.51 -0.14 -1.27 16 14 S 2.58 45.91 4.87 -107.50 -0.52 45.39 16 15 O -0.95 -18.46 12.85 -57.54 -0.74 -19.20 16 16 O -0.97 -19.56 16.53 -57.54 -0.95 -20.51 16 17 C -0.59 -11.44 6.12 37.16 0.23 -11.21 16 18 C 0.02 0.41 4.29 -27.88 -0.12 0.29 16 19 C -0.60 -16.81 9.11 -34.44 -0.31 -17.12 16 20 H 0.05 1.46 7.74 -52.49 -0.41 1.05 16 21 C 0.02 0.47 5.46 -17.82 -0.10 0.37 16 22 N -0.90 -27.65 13.65 55.43 0.76 -26.90 16 23 Si 1.07 24.78 29.90 -169.99 -5.08 19.70 16 24 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 25 H -0.29 -6.27 7.11 56.52 0.40 -5.87 16 26 H -0.29 -6.27 7.11 56.52 0.40 -5.86 16 27 H 0.04 0.30 8.14 -51.92 -0.42 -0.13 16 28 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.05 0.63 6.85 -51.93 -0.36 0.28 16 32 H 0.09 0.85 8.06 -51.93 -0.42 0.43 16 33 H 0.11 1.26 6.82 -51.93 -0.35 0.91 16 34 H 0.09 0.99 6.60 -51.93 -0.34 0.65 16 35 H 0.08 0.98 7.57 -51.93 -0.39 0.58 16 36 H 0.10 1.64 6.54 -51.93 -0.34 1.30 16 37 H 0.06 1.01 6.78 -51.93 -0.35 0.66 16 38 H 0.10 1.19 8.06 -52.48 -0.42 0.77 16 39 H 0.10 0.92 8.06 -52.49 -0.42 0.50 16 40 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.07 0.70 8.12 -51.93 -0.42 0.28 16 44 H 0.12 2.08 6.85 -51.92 -0.36 1.73 16 45 H 0.12 2.17 8.14 -51.92 -0.42 1.75 16 46 H 0.02 0.64 8.01 -51.93 -0.42 0.22 16 47 H 0.02 0.59 8.01 -51.93 -0.42 0.18 16 48 H 0.27 8.25 7.22 -40.82 -0.29 7.95 16 LS Contribution 385.50 15.07 5.81 5.81 Total: -1.00 -33.85 385.50 -9.99 -43.84 By element: Atomic # 1 Polarization: 10.75 SS G_CDS: -8.31 Total: 2.44 kcal Atomic # 6 Polarization: -31.89 SS G_CDS: -0.34 Total: -32.24 kcal Atomic # 7 Polarization: -41.12 SS G_CDS: 0.47 Total: -40.65 kcal Atomic # 8 Polarization: -42.28 SS G_CDS: -2.01 Total: -44.29 kcal Atomic # 14 Polarization: 24.78 SS G_CDS: -5.08 Total: 19.70 kcal Atomic # 16 Polarization: 45.91 SS G_CDS: -0.52 Total: 45.39 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -33.85 -9.99 -43.84 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359977621.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.791 kcal (2) G-P(sol) polarization free energy of solvation -33.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds