Wall clock time and date at job start Tue Mar 31 2020 16:38:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.42905 * 114.00109 * 2 1 4 4 C 1.52997 * 109.47072 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.47307 * 65.00397 * 4 3 2 6 6 C 1.46507 * 119.99719 * 274.99789 * 5 4 3 7 7 C 1.52993 * 109.47117 * 274.99712 * 6 5 4 8 8 H 1.09005 * 109.64298 * 55.42180 * 7 6 5 9 9 C 1.53027 * 109.64229 * 294.99988 * 7 6 5 10 10 C 1.50069 * 110.14385 * 190.87735 * 9 7 6 11 11 C 1.29438 * 124.08159 * 17.13379 * 10 9 7 12 12 C 1.50071 * 124.07093 * 359.50707 * 11 10 9 13 13 C 1.53037 * 110.14081 * 17.16626 * 12 11 10 14 14 S 1.65601 * 120.00577 * 94.99571 * 5 4 3 15 15 O 1.42096 * 104.27862 * 153.93319 * 14 5 4 16 16 O 1.42105 * 104.27565 * 26.06975 * 14 5 4 17 17 C 1.81399 * 104.44935 * 270.00333 * 14 5 4 18 18 C 1.53002 * 109.47165 * 179.97438 * 17 14 5 19 19 C 1.50706 * 109.46931 * 179.97438 * 18 17 14 20 20 H 1.07999 * 120.00193 * 0.02562 * 19 18 17 21 21 C 1.37879 * 119.99398 * 180.02562 * 19 18 17 22 22 N 1.31514 * 120.00338 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99424 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.46845 * 180.02562 * 23 21 19 25 25 H 1.48503 * 109.47399 * 299.99813 * 23 21 19 26 26 H 1.48498 * 109.47295 * 60.00420 * 23 21 19 27 27 H 1.09008 * 109.47039 * 299.99718 * 1 2 3 28 28 H 1.08994 * 109.47732 * 59.99649 * 1 2 3 29 29 H 1.09000 * 109.47159 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47039 * 60.00043 * 3 2 1 31 31 H 1.09000 * 109.46970 * 300.00514 * 3 2 1 32 32 H 1.09001 * 109.47403 * 305.00115 * 4 3 2 33 33 H 1.09003 * 109.46982 * 184.99969 * 4 3 2 34 34 H 1.09004 * 109.46982 * 35.00015 * 6 5 4 35 35 H 1.09000 * 109.46871 * 154.99901 * 6 5 4 36 36 H 1.08994 * 109.36163 * 311.08527 * 9 7 6 37 37 H 1.09004 * 109.35413 * 70.81152 * 9 7 6 38 38 H 1.08010 * 117.95890 * 197.15604 * 10 9 7 39 39 H 1.07994 * 117.96639 * 179.52907 * 11 10 9 40 40 H 1.09001 * 109.36167 * 137.36486 * 12 11 10 41 41 H 1.09000 * 109.35563 * 257.08152 * 12 11 10 42 42 H 1.08999 * 109.63392 * 190.85883 * 13 12 11 43 43 H 1.08997 * 109.66049 * 70.22666 * 13 12 11 44 44 H 1.09004 * 109.47568 * 59.99655 * 17 14 5 45 45 H 1.09004 * 109.47089 * 299.99644 * 17 14 5 46 46 H 1.09000 * 109.46986 * 60.00120 * 18 17 14 47 47 H 1.08992 * 109.46974 * 300.00184 * 18 17 14 48 48 H 0.97000 * 119.99706 * 359.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 3.9756 0.5645 -1.2527 6 6 4.0003 -0.8950 -1.3782 7 6 5.3191 -1.4326 -0.8192 8 1 5.4488 -1.0899 0.2074 9 6 6.4832 -0.9347 -1.6787 10 6 7.7448 -1.6586 -1.3096 11 6 7.7762 -2.7667 -0.6412 12 6 6.5558 -3.4768 -0.1330 13 6 5.3086 -2.9660 -0.8580 14 16 4.4453 1.5130 -2.5263 15 8 5.3409 0.6920 -3.2632 16 8 4.8877 2.7198 -1.9201 17 6 2.9202 1.7953 -3.4671 18 6 3.2263 2.6706 -4.6841 19 6 1.9593 2.9045 -5.4660 20 1 1.0288 2.4725 -5.1284 21 6 1.9882 3.6701 -6.6123 22 7 3.1214 4.1957 -7.0237 23 14 0.4177 3.9606 -7.5811 24 1 0.7150 4.8091 -8.7631 25 1 -0.1331 2.6579 -8.0335 26 1 -0.5772 4.6456 -6.7173 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.6886 1.8464 0.8900 31 1 1.6885 1.8464 -0.8899 32 1 3.8514 0.5682 0.8409 33 1 3.9785 2.1765 0.0889 34 1 3.1677 -1.3219 -0.8190 35 1 3.9117 -1.1708 -2.4290 36 1 6.2584 -1.1136 -2.7301 37 1 6.6213 0.1342 -1.5156 38 1 8.6852 -1.2280 -1.6206 39 1 8.7406 -3.2073 -0.4363 40 1 6.6618 -4.5475 -0.3073 41 1 6.4504 -3.2937 0.9364 42 1 4.4153 -3.3391 -0.3573 43 1 5.3211 -3.3064 -1.8934 44 1 2.1898 2.2979 -2.8330 45 1 2.5160 0.8390 -3.7993 46 1 3.9567 2.1683 -5.3184 47 1 3.6303 3.6267 -4.3516 48 1 3.9368 4.0451 -6.5204 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359977621.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:38:27 Heat of formation + Delta-G solvation = -144.397933 kcal Electronic energy + Delta-G solvation = -28205.321110 eV Core-core repulsion = 24386.213063 eV Total energy + Delta-G solvation = -3819.108047 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.165 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.02439 -38.97493 -38.19761 -37.12188 -36.75227 -36.32479 -33.06066 -32.84249 -31.58235 -30.17712 -27.34632 -27.14727 -26.25947 -24.26151 -23.96217 -23.17060 -21.93169 -19.84236 -19.48530 -18.94567 -18.17421 -17.77679 -17.65113 -17.09779 -16.76411 -16.59313 -16.04612 -15.73717 -15.67940 -15.27237 -15.22112 -14.92952 -14.54105 -14.25815 -14.13076 -14.03400 -13.83551 -13.39220 -13.34627 -13.24874 -13.15769 -13.06626 -12.90241 -12.76179 -12.54150 -12.49733 -12.34268 -12.23040 -12.01651 -11.94702 -11.80638 -11.51813 -11.35987 -11.03244 -10.78889 -10.65209 -10.56140 -9.90053 -9.82062 -8.78072 -6.52339 -0.78684 1.42862 1.50741 1.59509 1.67161 1.78963 2.52421 2.74928 2.87134 3.06385 3.10196 3.55781 3.80131 3.83843 3.88004 3.97006 3.99569 4.10672 4.29543 4.40053 4.42144 4.45749 4.49113 4.52355 4.57463 4.59730 4.62211 4.75408 4.77810 4.84712 4.88752 4.93679 4.96788 5.02586 5.04671 5.09300 5.12499 5.20746 5.27058 5.37064 5.59478 5.67612 5.78050 5.81313 6.03805 6.11686 6.24219 6.41157 7.30742 8.61316 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.012611 B = 0.003821 C = 0.003275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2219.730334 B = 7326.696071 C = 8547.036527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.395 6.395 3 C 0.033 3.967 4 C 0.113 3.887 5 N -0.983 5.983 6 C 0.129 3.871 7 C -0.099 4.099 8 H 0.081 0.919 9 C -0.089 4.089 10 C -0.174 4.174 11 C -0.156 4.156 12 C -0.088 4.088 13 C -0.111 4.111 14 S 2.605 3.395 15 O -0.973 6.973 16 O -0.994 6.994 17 C -0.588 4.588 18 C 0.008 3.992 19 C -0.614 4.614 20 H 0.065 0.935 21 C -0.041 4.041 22 N -0.934 5.934 23 Si 1.122 2.878 24 H -0.283 1.283 25 H -0.264 1.264 26 H -0.264 1.264 27 H 0.053 0.947 28 H 0.034 0.966 29 H 0.098 0.902 30 H 0.085 0.915 31 H 0.039 0.961 32 H 0.115 0.885 33 H 0.102 0.898 34 H 0.113 0.887 35 H 0.070 0.930 36 H 0.076 0.924 37 H 0.037 0.963 38 H 0.092 0.908 39 H 0.112 0.888 40 H 0.087 0.913 41 H 0.084 0.916 42 H 0.089 0.911 43 H 0.059 0.941 44 H 0.131 0.869 45 H 0.134 0.866 46 H 0.002 0.998 47 H 0.000 1.000 48 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.833 -15.359 19.756 25.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.314 6.314 3 C -0.045 4.045 4 C -0.012 4.012 5 N -0.821 5.821 6 C 0.004 3.996 7 C -0.119 4.119 8 H 0.100 0.900 9 C -0.127 4.127 10 C -0.192 4.192 11 C -0.174 4.174 12 C -0.124 4.124 13 C -0.149 4.149 14 S 2.702 3.298 15 O -0.963 6.963 16 O -0.984 6.984 17 C -0.719 4.719 18 C -0.031 4.031 19 C -0.653 4.653 20 H 0.083 0.917 21 C -0.238 4.238 22 N -0.570 5.570 23 Si 0.941 3.059 24 H -0.209 1.209 25 H -0.189 1.189 26 H -0.188 1.188 27 H 0.072 0.928 28 H 0.053 0.947 29 H 0.117 0.883 30 H 0.103 0.897 31 H 0.058 0.942 32 H 0.133 0.867 33 H 0.120 0.880 34 H 0.132 0.868 35 H 0.089 0.911 36 H 0.094 0.906 37 H 0.056 0.944 38 H 0.110 0.890 39 H 0.130 0.870 40 H 0.105 0.895 41 H 0.103 0.897 42 H 0.108 0.892 43 H 0.078 0.922 44 H 0.150 0.850 45 H 0.152 0.848 46 H 0.020 0.980 47 H 0.019 0.981 48 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -1.431 -14.481 18.301 23.381 hybrid contribution 0.394 0.014 0.775 0.870 sum -1.037 -14.467 19.077 23.964 Atomic orbital electron populations 1.22900 0.80242 1.03729 1.00372 1.87828 1.20590 1.27459 1.95507 1.23230 0.94155 0.85561 1.01551 1.21656 0.92314 1.00475 0.86749 1.57266 1.82617 1.16232 1.25936 1.21592 0.98579 0.77275 1.02118 1.21618 0.93797 0.96726 0.99763 0.90040 1.20671 0.93629 0.97708 1.00645 1.22192 0.98304 0.97858 1.00864 1.22273 1.00089 0.96090 0.98951 1.20496 0.91681 0.99965 1.00302 1.21608 0.98993 0.93061 1.01242 1.05004 0.77125 0.73159 0.74562 1.93568 1.61233 1.67523 1.73983 1.93480 1.80584 1.48587 1.75763 1.30412 1.21253 1.09572 1.10627 1.18947 0.98429 0.93352 0.92337 1.22305 0.95029 1.35985 1.11934 0.91689 1.27667 1.05929 0.92668 0.97565 1.70925 1.00173 1.44372 1.41578 0.82906 0.70360 0.77618 0.75028 1.20883 1.18930 1.18849 0.92842 0.94725 0.88314 0.89666 0.94237 0.86724 0.87969 0.86847 0.91140 0.90565 0.94437 0.88955 0.86963 0.89480 0.89725 0.89199 0.92239 0.85040 0.84778 0.97955 0.98145 0.93661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 11.01 113.37 1.25 1.61 16 2 O -0.39 -7.62 9.02 -148.98 -1.34 -8.96 16 3 C 0.03 0.64 6.28 71.98 0.45 1.10 16 4 C 0.11 2.37 6.11 86.38 0.53 2.90 16 5 N -0.98 -25.82 2.48 -515.78 -1.28 -27.10 16 6 C 0.13 2.92 4.80 86.38 0.42 3.34 16 7 C -0.10 -2.17 2.45 -10.66 -0.03 -2.19 16 8 H 0.08 1.65 8.08 -2.38 -0.02 1.63 16 9 C -0.09 -2.58 3.69 29.66 0.11 -2.47 16 10 C -0.17 -4.41 9.80 27.04 0.27 -4.15 16 11 C -0.16 -3.09 9.80 27.04 0.27 -2.83 16 12 C -0.09 -1.34 6.12 29.66 0.18 -1.16 16 13 C -0.11 -1.89 5.31 30.74 0.16 -1.73 16 14 S 2.60 95.44 4.87 -56.49 -0.28 95.17 16 15 O -0.97 -39.61 12.85 -127.65 -1.64 -41.25 16 16 O -0.99 -41.57 16.53 -127.65 -2.11 -43.68 16 17 C -0.59 -23.44 6.12 71.98 0.44 -23.00 16 18 C 0.01 0.43 4.29 29.85 0.13 0.56 16 19 C -0.61 -34.97 9.11 25.60 0.23 -34.73 16 20 H 0.06 3.47 7.74 -2.91 -0.02 3.45 16 21 C -0.04 -2.37 5.46 84.66 0.46 -1.91 16 22 N -0.93 -59.02 13.65 21.45 0.29 -58.73 16 23 Si 1.12 49.43 29.90 68.60 2.05 51.48 16 24 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 25 H -0.26 -10.65 7.11 99.48 0.71 -9.94 16 26 H -0.26 -10.57 7.11 99.48 0.71 -9.87 16 27 H 0.05 0.66 8.14 -2.38 -0.02 0.64 16 28 H 0.03 0.59 8.14 -2.39 -0.02 0.57 16 29 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.09 1.23 8.14 -2.39 -0.02 1.22 16 31 H 0.04 0.87 6.85 -2.39 -0.02 0.86 16 32 H 0.11 1.84 8.06 -2.39 -0.02 1.82 16 33 H 0.10 2.30 6.82 -2.39 -0.02 2.28 16 34 H 0.11 2.11 6.60 -2.38 -0.02 2.10 16 35 H 0.07 1.72 7.57 -2.39 -0.02 1.70 16 36 H 0.08 2.57 6.54 -2.39 -0.02 2.55 16 37 H 0.04 1.24 6.78 -2.39 -0.02 1.22 16 38 H 0.09 2.35 8.06 -2.91 -0.02 2.32 16 39 H 0.11 1.86 8.06 -2.91 -0.02 1.84 16 40 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 41 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 42 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 43 H 0.06 1.12 8.12 -2.39 -0.02 1.10 16 44 H 0.13 4.74 6.85 -2.39 -0.02 4.72 16 45 H 0.13 4.87 8.14 -2.39 -0.02 4.85 16 46 H 0.00 0.13 8.01 -2.39 -0.02 0.11 16 47 H 0.00 0.02 8.01 -2.39 -0.02 0.00 16 48 H 0.25 16.40 7.22 -92.71 -0.67 15.73 16 Total: -1.00 -75.84 385.50 1.57 -74.26 By element: Atomic # 1 Polarization: 22.46 SS G_CDS: 1.02 Total: 23.48 kcal Atomic # 6 Polarization: -69.54 SS G_CDS: 4.86 Total: -64.67 kcal Atomic # 7 Polarization: -84.84 SS G_CDS: -0.99 Total: -85.83 kcal Atomic # 8 Polarization: -88.79 SS G_CDS: -5.09 Total: -93.89 kcal Atomic # 14 Polarization: 49.43 SS G_CDS: 2.05 Total: 51.48 kcal Atomic # 16 Polarization: 95.44 SS G_CDS: -0.28 Total: 95.17 kcal Total: -75.84 1.57 -74.26 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359977621.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.136 kcal (2) G-P(sol) polarization free energy of solvation -75.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds