Wall clock time and date at job start Tue Mar 31 2020 17:07:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34226 * 117.00233 * 2 1 4 4 O 1.20829 * 120.00078 * 0.02562 * 3 2 1 5 5 C 1.50701 * 120.00360 * 179.72569 * 3 2 1 6 6 H 1.09001 * 110.01038 * 329.06222 * 5 3 2 7 7 C 1.54266 * 110.03398 * 207.61901 * 5 3 2 8 8 C 1.54890 * 104.19537 * 217.10382 * 7 5 3 9 9 C 1.54893 * 102.74561 * 37.94223 * 8 7 5 10 10 C 1.53871 * 110.03254 * 90.44861 * 5 3 2 11 11 H 1.09003 * 110.03195 * 238.62144 * 10 5 3 12 12 N 1.46508 * 110.03305 * 0.02562 * 10 5 3 13 13 C 1.34771 * 119.99984 * 210.26675 * 12 10 5 14 14 O 1.21285 * 119.99979 * 359.97438 * 13 12 10 15 15 C 1.50696 * 119.99767 * 180.02562 * 13 12 10 16 16 C 1.50706 * 109.46980 * 179.97438 * 15 13 12 17 17 C 1.37644 * 120.12370 * 264.99786 * 16 15 13 18 18 C 1.38615 * 120.24324 * 179.97438 * 17 16 15 19 19 C 1.38651 * 120.50330 * 0.02562 * 18 17 16 20 20 C 1.37592 * 120.25320 * 0.02562 * 19 18 17 21 21 C 1.40691 * 120.12802 * 84.72420 * 16 15 13 22 22 C 1.41391 * 120.24962 * 359.97438 * 21 16 15 23 23 H 1.08010 * 119.99726 * 334.83426 * 22 21 16 24 24 C 1.39944 * 120.00437 * 154.83003 * 22 21 16 25 25 N 1.30823 * 120.00155 * 344.20645 * 24 22 21 26 26 Si 1.86800 * 119.99758 * 164.20540 * 24 22 21 27 27 H 1.48499 * 109.47329 * 90.00395 * 26 24 22 28 28 H 1.48506 * 109.46783 * 209.99915 * 26 24 22 29 29 H 1.48494 * 109.47459 * 330.00029 * 26 24 22 30 30 H 1.09004 * 109.46623 * 299.99887 * 1 2 3 31 31 H 1.08996 * 109.46794 * 59.99586 * 1 2 3 32 32 H 1.08994 * 109.47105 * 180.02562 * 1 2 3 33 33 H 1.09001 * 110.48488 * 335.78119 * 7 5 3 34 34 H 1.09002 * 110.48697 * 98.42211 * 7 5 3 35 35 H 1.08997 * 110.75214 * 279.63081 * 8 7 5 36 36 H 1.08994 * 110.91439 * 156.32854 * 8 7 5 37 37 H 1.09007 * 110.48212 * 203.37911 * 9 8 7 38 38 H 1.08996 * 110.59737 * 80.79692 * 9 8 7 39 39 H 0.97005 * 119.99621 * 30.26118 * 12 10 5 40 40 H 1.08996 * 109.47165 * 299.98887 * 15 13 12 41 41 H 1.09000 * 109.47666 * 59.99582 * 15 13 12 42 42 H 1.07997 * 119.87878 * 359.97438 * 17 16 15 43 43 H 1.08005 * 119.74640 * 179.97438 * 18 17 16 44 44 H 1.08002 * 119.87732 * 180.02562 * 19 18 17 45 45 H 1.08002 * 120.13537 * 179.97438 * 20 19 18 46 46 H 0.96996 * 120.00296 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2749 0.0062 6 1 3.9826 0.4182 0.5364 7 6 4.0240 2.5864 0.6772 8 6 5.2616 3.0224 -0.1458 9 6 4.8606 2.6427 -1.5930 10 6 4.0983 1.3106 -1.4371 11 1 4.7728 0.4714 -1.6074 12 7 2.9822 1.2578 -2.3848 13 6 3.1504 0.6843 -3.5927 14 8 4.2258 0.2122 -3.8954 15 6 2.0025 0.6305 -4.5676 16 6 2.4496 -0.0558 -5.8326 17 6 2.8928 0.6881 -6.9026 18 6 3.3051 0.0594 -8.0671 19 6 3.2759 -1.3231 -8.1688 20 6 2.8357 -2.0867 -7.1122 21 6 2.4211 -1.4596 -5.9224 22 6 1.9738 -2.2344 -4.8275 23 1 2.0386 -1.8395 -3.8243 24 6 1.4471 -3.5128 -5.0436 25 7 1.0803 -3.8744 -6.2462 26 14 1.2681 -4.7029 -3.6150 27 1 -0.0680 -4.5291 -2.9904 28 1 1.4051 -6.0959 -4.1110 29 1 2.3246 -4.4299 -2.6078 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0276 0.0005 33 1 3.2395 3.3406 0.6151 34 1 4.3007 2.4070 1.7162 35 1 6.1476 2.4701 0.1670 36 1 5.4272 4.0963 -0.0601 37 1 5.7480 2.5044 -2.2108 38 1 4.2120 3.4054 -2.0238 39 1 2.1222 1.6357 -2.1427 40 1 1.1758 0.0748 -4.1252 41 1 1.6758 1.6440 -4.8005 42 1 2.9194 1.7656 -6.8345 43 1 3.6509 0.6510 -8.9019 44 1 3.5999 -1.8025 -9.0807 45 1 2.8134 -3.1634 -7.1936 46 1 0.7156 -4.7606 -6.3960 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000856410116.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:07:19 Heat of formation + Delta-G solvation = -114.796992 kcal Electronic energy + Delta-G solvation = -29241.681334 eV Core-core repulsion = 25288.412929 eV Total energy + Delta-G solvation = -3953.268405 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.12552 -39.29635 -37.97292 -37.06009 -36.31872 -33.59605 -33.37349 -31.64066 -30.10297 -29.41423 -28.19162 -27.48149 -26.27504 -24.88952 -22.71397 -21.23100 -20.87428 -20.67414 -19.78201 -19.35469 -17.78849 -17.28468 -17.02662 -16.84046 -16.01907 -15.47189 -15.32881 -15.14087 -14.70110 -14.49411 -14.20494 -13.66320 -13.58024 -13.44083 -13.21114 -12.95249 -12.56651 -12.43571 -12.16560 -11.88110 -11.74035 -11.60792 -11.52457 -11.28236 -11.18068 -11.08131 -10.95146 -10.94132 -10.89225 -10.84622 -10.66965 -10.50635 -10.36568 -9.45913 -9.34701 -9.17109 -9.11533 -8.78467 -7.27161 -7.26116 -6.69903 -4.30816 1.99673 2.58592 2.80823 2.99916 3.07882 3.13988 3.29746 3.31596 3.59079 3.95969 4.24178 4.28973 4.61231 4.69730 4.95012 5.03891 5.11252 5.13247 5.17070 5.23252 5.33152 5.45543 5.48992 5.53854 5.65407 5.78727 5.82648 5.95299 6.03127 6.05373 6.13131 6.18639 6.30125 6.32454 6.45502 6.55122 6.74421 6.83226 7.11684 7.34430 7.46698 7.58462 7.67275 7.84491 7.97615 8.11466 8.17424 8.35354 8.68792 8.84102 8.95515 9.05533 10.23329 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.011101 B = 0.004548 C = 0.003580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2521.618618 B = 6155.418472 C = 7819.310871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.350 6.350 3 C 0.472 3.528 4 O -0.510 6.510 5 C -0.099 4.099 6 H 0.113 0.887 7 C -0.115 4.115 8 C -0.120 4.120 9 C -0.135 4.135 10 C 0.155 3.845 11 H 0.108 0.892 12 N -0.746 5.746 13 C 0.519 3.481 14 O -0.515 6.515 15 C -0.071 4.071 16 C -0.181 4.181 17 C -0.081 4.081 18 C -0.240 4.240 19 C -0.107 4.107 20 C -0.160 4.160 21 C 0.128 3.872 22 C -0.454 4.454 23 H 0.074 0.926 24 C 0.077 3.923 25 N -0.796 5.796 26 Si 0.901 3.099 27 H -0.271 1.271 28 H -0.276 1.276 29 H -0.260 1.260 30 H 0.061 0.939 31 H 0.067 0.933 32 H 0.103 0.897 33 H 0.088 0.912 34 H 0.075 0.925 35 H 0.072 0.928 36 H 0.074 0.926 37 H 0.077 0.923 38 H 0.074 0.926 39 H 0.393 0.607 40 H 0.094 0.906 41 H 0.075 0.925 42 H 0.084 0.916 43 H 0.085 0.915 44 H 0.086 0.914 45 H 0.119 0.881 46 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.184 8.688 14.079 16.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.265 6.265 3 C 0.316 3.684 4 O -0.398 6.398 5 C -0.119 4.119 6 H 0.131 0.869 7 C -0.153 4.153 8 C -0.158 4.158 9 C -0.173 4.173 10 C 0.050 3.950 11 H 0.126 0.874 12 N -0.402 5.402 13 C 0.307 3.693 14 O -0.389 6.389 15 C -0.111 4.111 16 C -0.183 4.183 17 C -0.099 4.099 18 C -0.259 4.259 19 C -0.126 4.126 20 C -0.179 4.179 21 C 0.126 3.874 22 C -0.483 4.483 23 H 0.092 0.908 24 C -0.141 4.141 25 N -0.421 5.421 26 Si 0.726 3.274 27 H -0.196 1.196 28 H -0.201 1.201 29 H -0.184 1.184 30 H 0.080 0.920 31 H 0.085 0.915 32 H 0.122 0.878 33 H 0.107 0.893 34 H 0.093 0.907 35 H 0.091 0.909 36 H 0.093 0.907 37 H 0.096 0.904 38 H 0.093 0.907 39 H 0.228 0.772 40 H 0.112 0.888 41 H 0.093 0.907 42 H 0.102 0.898 43 H 0.103 0.897 44 H 0.104 0.896 45 H 0.137 0.863 46 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 1.618 8.388 13.704 16.148 hybrid contribution -0.831 -0.461 0.719 1.192 sum 0.787 7.927 14.423 16.476 Atomic orbital electron populations 1.23338 0.76034 1.04192 1.02494 1.86589 1.23647 1.32978 1.83305 1.23493 0.91873 0.81550 0.71523 1.90660 1.67032 1.36289 1.45827 1.22159 0.87904 1.02364 0.99446 0.86880 1.22463 0.98950 0.94937 0.98922 1.22447 0.97244 1.01503 0.94626 1.22837 1.00745 0.96717 0.97051 1.21470 0.89139 0.99900 0.84522 0.87375 1.46484 1.14002 1.62906 1.16844 1.21245 0.90859 0.75864 0.81320 1.90674 1.27592 1.44356 1.76236 1.20266 0.96123 1.00591 0.94092 1.19030 1.12014 0.93599 0.93681 1.20292 0.99117 0.96635 0.93867 1.20297 1.13217 0.94383 0.98022 1.20678 1.00510 0.93798 0.97603 1.21342 1.02900 0.99581 0.94093 1.17335 0.87602 0.89922 0.92532 1.19473 1.35716 0.98690 0.94469 0.90810 1.25875 0.93071 0.98609 0.96497 1.69817 1.29960 1.20124 1.22237 0.86425 0.79479 0.79476 0.82068 1.19587 1.20118 1.18416 0.92000 0.91451 0.87834 0.89337 0.90659 0.90878 0.90745 0.90387 0.90745 0.77198 0.88756 0.90679 0.89827 0.89715 0.89622 0.86301 0.91019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 10.56 101.05 1.07 1.42 16 2 O -0.35 -4.65 10.57 -39.25 -0.41 -5.06 16 3 C 0.47 6.07 4.99 36.01 0.18 6.25 16 4 O -0.51 -7.18 14.87 -18.75 -0.28 -7.46 16 5 C -0.10 -1.08 3.41 -90.66 -0.31 -1.39 16 6 H 0.11 1.07 8.14 -51.93 -0.42 0.64 16 7 C -0.12 -1.03 6.31 -25.07 -0.16 -1.19 16 8 C -0.12 -1.02 6.91 -24.74 -0.17 -1.19 16 9 C -0.13 -1.53 6.53 -25.07 -0.16 -1.70 16 10 C 0.16 2.06 3.31 -66.81 -0.22 1.84 16 11 H 0.11 1.61 7.41 -51.93 -0.38 1.22 16 12 N -0.75 -11.65 4.51 -52.72 -0.24 -11.89 16 13 C 0.52 10.30 7.44 -10.99 -0.08 10.21 16 14 O -0.52 -12.22 15.61 5.55 0.09 -12.14 16 15 C -0.07 -1.43 5.18 -29.03 -0.15 -1.59 16 16 C -0.18 -4.43 4.43 -103.91 -0.46 -4.89 16 17 C -0.08 -1.90 9.66 -39.66 -0.38 -2.28 16 18 C -0.24 -5.66 10.05 -39.29 -0.39 -6.06 16 19 C -0.11 -2.65 10.02 -39.66 -0.40 -3.05 16 20 C -0.16 -4.31 8.69 -38.87 -0.34 -4.65 16 21 C 0.13 3.46 5.58 -106.82 -0.60 2.87 16 22 C -0.45 -11.99 8.17 -37.74 -0.31 -12.30 16 23 H 0.07 1.91 6.63 -52.48 -0.35 1.56 16 24 C 0.08 1.93 5.18 -17.34 -0.09 1.84 16 25 N -0.80 -20.57 10.86 55.55 0.60 -19.97 16 26 Si 0.90 18.86 29.59 -169.99 -5.03 13.83 16 27 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 28 H -0.28 -5.67 7.11 56.52 0.40 -5.26 16 29 H -0.26 -5.52 7.11 56.52 0.40 -5.12 16 30 H 0.06 0.57 8.13 -51.93 -0.42 0.15 16 31 H 0.07 0.72 8.13 -51.93 -0.42 0.30 16 32 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.09 0.90 6.84 -51.93 -0.36 0.54 16 34 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 35 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.07 0.88 8.05 -51.93 -0.42 0.47 16 39 H 0.39 5.72 6.43 -40.82 -0.26 5.46 16 40 H 0.09 1.89 7.07 -51.93 -0.37 1.52 16 41 H 0.07 1.30 8.05 -51.93 -0.42 0.88 16 42 H 0.08 1.73 8.06 -52.49 -0.42 1.31 16 43 H 0.08 1.77 8.06 -52.48 -0.42 1.35 16 44 H 0.09 1.89 8.06 -52.49 -0.42 1.47 16 45 H 0.12 3.29 6.11 -52.49 -0.32 2.97 16 46 H 0.28 6.58 8.30 -40.82 -0.34 6.25 16 LS Contribution 377.92 15.07 5.70 5.70 Total: -1.00 -31.59 377.92 -9.21 -40.80 By element: Atomic # 1 Polarization: 18.69 SS G_CDS: -6.66 Total: 12.04 kcal Atomic # 6 Polarization: -12.86 SS G_CDS: -2.98 Total: -15.84 kcal Atomic # 7 Polarization: -32.23 SS G_CDS: 0.37 Total: -31.86 kcal Atomic # 8 Polarization: -24.05 SS G_CDS: -0.61 Total: -24.66 kcal Atomic # 14 Polarization: 18.86 SS G_CDS: -5.03 Total: 13.83 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -31.59 -9.21 -40.80 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000856410116.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.000 kcal (2) G-P(sol) polarization free energy of solvation -31.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds