Wall clock time and date at job start Tue Mar 31 2020 16:02:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34779 * 120.00208 * 2 1 4 4 O 1.21704 * 119.99783 * 180.10781 * 3 2 1 5 5 C 1.46600 * 119.99851 * 0.10704 * 3 2 1 6 6 C 1.38027 * 126.00968 * 190.17212 * 5 3 2 7 7 C 1.39393 * 107.43266 * 180.02562 * 6 5 3 8 8 C 1.37757 * 107.65370 * 359.97438 * 7 6 5 9 9 C 1.47915 * 125.82192 * 180.02562 * 8 7 6 10 10 N 1.34203 * 126.70046 * 180.02562 * 9 8 7 11 11 N 1.28985 * 107.24679 * 180.02562 * 10 9 8 12 12 N 1.28717 * 108.99986 * 359.97438 * 11 10 9 13 13 H 0.96994 * 125.31949 * 179.97438 * 12 11 10 14 14 N 1.28878 * 109.36389 * 359.73192 * 12 11 10 15 15 N 1.36394 * 108.35417 * 359.73793 * 8 7 6 16 16 H 0.97005 * 125.70600 * 180.26283 * 15 8 7 17 17 C 1.46501 * 119.99771 * 179.97438 * 2 1 3 18 18 H 1.09002 * 110.77866 * 176.76748 * 17 2 1 19 19 C 1.55156 * 110.72071 * 299.99810 * 17 2 1 20 20 C 1.54906 * 101.61658 * 153.84516 * 19 17 2 21 21 N 1.47470 * 104.81272 * 323.04875 * 20 19 17 22 22 C 1.36943 * 125.62663 * 204.04635 * 21 20 19 23 23 H 1.07996 * 119.99493 * 180.02562 * 22 21 20 24 24 C 1.38806 * 119.99976 * 0.02562 * 22 21 20 25 25 N 1.31620 * 120.00280 * 359.97438 * 24 22 21 26 26 Si 1.86803 * 119.99769 * 179.97438 * 24 22 21 27 27 H 1.48502 * 109.47090 * 89.99861 * 26 24 22 28 28 H 1.48505 * 109.47118 * 209.99611 * 26 24 22 29 29 H 1.48493 * 109.47141 * 329.99634 * 26 24 22 30 30 C 1.47014 * 108.72116 * 24.06468 * 21 20 19 31 31 H 1.08994 * 109.47173 * 276.29835 * 1 2 3 32 32 H 1.09003 * 109.46921 * 36.30243 * 1 2 3 33 33 H 1.08997 * 109.46920 * 156.29588 * 1 2 3 34 34 H 1.08006 * 126.28854 * 359.96119 * 6 5 3 35 35 H 1.08005 * 126.17701 * 180.02562 * 7 6 5 36 36 H 1.08993 * 111.00709 * 271.94289 * 19 17 2 37 37 H 1.09001 * 111.00422 * 35.75765 * 19 17 2 38 38 H 1.09005 * 110.36847 * 81.85145 * 20 19 17 39 39 H 1.09000 * 110.37193 * 204.16922 * 20 19 17 40 40 H 0.97000 * 120.00172 * 180.02562 * 25 24 22 41 41 H 1.08999 * 109.88532 * 239.55532 * 30 21 20 42 42 H 1.09007 * 109.88257 * 118.39563 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3560 1.1671 -0.0020 5 6 1.4060 2.4368 0.0024 6 6 1.9516 3.6892 -0.1945 7 6 0.9127 4.6150 -0.1130 8 6 -0.2500 3.9176 0.1313 9 6 -1.5967 4.5084 0.2902 10 7 -2.7397 3.8469 0.5287 11 7 -3.6823 4.7246 0.5980 12 7 -3.1791 5.8952 0.4149 13 1 -3.6782 6.7269 0.4186 14 7 -1.9079 5.7899 0.2311 15 7 0.0515 2.5889 0.1952 16 1 -0.5822 1.8716 0.3531 17 6 2.1975 -1.2688 0.0006 18 1 3.2720 -1.0950 -0.0570 19 6 1.8436 -2.1064 1.2577 20 6 2.1163 -3.5475 0.7593 21 7 1.6777 -3.5488 -0.6487 22 6 1.2890 -4.6512 -1.3620 23 1 0.9842 -4.5473 -2.3929 24 6 1.2868 -5.9020 -0.7602 25 7 1.6587 -6.0286 0.4960 26 14 0.7558 -7.4057 -1.7332 27 1 1.9381 -8.0047 -2.4030 28 1 0.1504 -8.4020 -0.8133 29 1 -0.2431 -7.0057 -2.7565 30 6 1.7273 -2.1712 -1.1596 31 1 -0.3633 0.1127 1.0214 32 1 -0.3633 0.8282 -0.6084 33 1 -0.3633 -0.9409 -0.4131 34 1 2.9927 3.9114 -0.3771 35 1 1.0028 5.6857 -0.2224 36 1 2.4957 -1.8519 2.0931 37 1 0.7958 -1.9789 1.5299 38 1 3.1799 -3.7768 0.8252 39 1 1.5361 -4.2656 1.3388 40 1 1.6575 -6.9028 0.9164 41 1 0.7358 -1.8627 -1.4909 42 1 2.4333 -2.1081 -1.9878 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001590991522.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:02:58 Heat of formation + Delta-G solvation = 196.157454 kcal Electronic energy + Delta-G solvation = -27692.795069 eV Core-core repulsion = 23714.055820 eV Total energy + Delta-G solvation = -3978.739249 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.150 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -44.86692 -41.69509 -39.43104 -37.33195 -35.07849 -34.77623 -33.78104 -32.36588 -31.37958 -29.81142 -29.10975 -27.59281 -27.00262 -25.10764 -24.96847 -24.19224 -22.19990 -21.16133 -20.25596 -20.17841 -19.88793 -19.24402 -17.73891 -17.57811 -17.02878 -16.73382 -15.72589 -15.62378 -14.80707 -14.71739 -14.34070 -14.20568 -14.11211 -13.94164 -13.32466 -13.24331 -13.13704 -12.81177 -12.50076 -12.41135 -12.11712 -11.86088 -11.80605 -11.59539 -11.58935 -11.35006 -11.08641 -10.94264 -10.83671 -10.54244 -10.14355 -9.92839 -9.86523 -9.59346 -9.33935 -8.69933 -8.59960 -8.29374 -6.89211 -5.69388 -3.12136 0.47089 0.87420 1.72830 1.76105 2.56194 2.67491 2.97841 3.28679 3.37026 3.38291 3.43366 3.45062 3.87531 4.39443 4.46372 4.79585 4.80440 4.99139 5.00800 5.13138 5.13740 5.37517 5.44407 5.50611 5.55532 5.63812 5.71044 5.82024 5.88870 5.93592 6.15991 6.24881 6.34455 6.45665 6.52176 6.55313 6.65214 6.85978 6.97072 7.39549 7.47647 7.58133 7.69369 7.80182 8.12746 8.30680 9.16999 9.77533 10.41121 11.34317 Molecular weight = 331.15amu Principal moments of inertia in cm(-1) A = 0.018482 B = 0.002514 C = 0.002301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1514.641888 B =11135.443813 C =12165.061518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.051 3.949 2 N -0.596 5.596 3 C 0.584 3.416 4 O -0.525 6.525 5 C -0.006 4.006 6 C -0.115 4.115 7 C -0.140 4.140 8 C 0.091 3.909 9 C 0.246 3.754 10 N -0.277 5.277 11 N -0.042 5.042 12 N -0.225 5.225 13 H 0.478 0.522 14 N -0.281 5.281 15 N -0.521 5.521 16 H 0.430 0.570 17 C 0.126 3.874 18 H 0.108 0.892 19 C -0.152 4.152 20 C 0.153 3.847 21 N -0.602 5.602 22 C -0.224 4.224 23 H 0.078 0.922 24 C -0.010 4.010 25 N -0.922 5.922 26 Si 0.916 3.084 27 H -0.288 1.288 28 H -0.290 1.290 29 H -0.281 1.281 30 C 0.128 3.872 31 H 0.062 0.938 32 H 0.069 0.931 33 H 0.102 0.898 34 H 0.158 0.842 35 H 0.154 0.846 36 H 0.062 0.938 37 H 0.063 0.937 38 H 0.016 0.984 39 H 0.110 0.890 40 H 0.253 0.747 41 H 0.029 0.971 42 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.243 25.193 1.301 26.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 N -0.328 5.328 3 C 0.372 3.628 4 O -0.401 6.401 5 C -0.123 4.123 6 C -0.141 4.141 7 C -0.168 4.168 8 C -0.028 4.028 9 C -0.034 4.034 10 N -0.151 5.151 11 N -0.038 5.038 12 N -0.071 5.071 13 H 0.332 0.668 14 N -0.133 5.133 15 N -0.126 5.126 16 H 0.279 0.721 17 C 0.024 3.976 18 H 0.126 0.874 19 C -0.191 4.191 20 C 0.028 3.972 21 N -0.329 5.329 22 C -0.352 4.352 23 H 0.096 0.904 24 C -0.205 4.205 25 N -0.570 5.570 26 Si 0.746 3.254 27 H -0.216 1.216 28 H -0.216 1.216 29 H -0.207 1.207 30 C 0.001 3.999 31 H 0.081 0.919 32 H 0.087 0.913 33 H 0.120 0.880 34 H 0.176 0.824 35 H 0.172 0.828 36 H 0.081 0.919 37 H 0.082 0.918 38 H 0.034 0.966 39 H 0.128 0.872 40 H 0.064 0.936 41 H 0.046 0.954 42 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -8.409 24.717 1.467 26.150 hybrid contribution -0.621 -0.493 -0.498 0.936 sum -9.030 24.224 0.969 25.871 Atomic orbital electron populations 1.22231 0.80754 1.04826 1.01479 1.47782 1.06482 1.06252 1.72241 1.17042 0.86818 0.81766 0.77163 1.90850 1.12215 1.86382 1.50608 1.20691 0.81952 0.96089 1.13556 1.21254 0.99998 0.89309 1.03543 1.21128 0.89631 0.99842 1.06180 1.16953 0.88317 0.84013 1.13537 1.22478 0.93437 0.86020 1.01460 1.76189 0.96475 1.24192 1.18213 1.78902 1.22226 0.88341 1.14296 1.47756 1.03952 1.10894 1.44530 0.66763 1.75002 0.96481 1.19909 1.21902 1.43268 1.08480 1.07133 1.53741 0.72147 1.22336 0.97194 0.80747 0.97353 0.87390 1.23392 1.00795 0.99003 0.95959 1.21962 0.98258 0.91224 0.85744 1.44448 1.77932 1.01048 1.09445 1.19061 1.36931 0.84646 0.94578 0.90434 1.24794 1.01660 0.97557 0.96515 1.69780 1.53803 1.22446 1.10964 0.86060 0.78152 0.82564 0.78625 1.21563 1.21624 1.20692 1.21540 0.97906 0.86368 0.94055 0.91940 0.91299 0.87962 0.82399 0.82846 0.91879 0.91832 0.96569 0.87228 0.93627 0.95363 0.95432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.60 7.62 59.85 0.46 1.06 16 2 N -0.60 -8.98 2.89 -173.41 -0.50 -9.48 16 3 C 0.58 9.03 7.64 -12.89 -0.10 8.93 16 4 O -0.52 -9.71 16.27 5.19 0.08 -9.63 16 5 C -0.01 -0.07 6.65 -81.96 -0.54 -0.62 16 6 C -0.12 -1.29 10.62 -39.23 -0.42 -1.70 16 7 C -0.14 -1.36 10.79 -39.33 -0.42 -1.78 16 8 C 0.09 0.95 7.12 -82.05 -0.58 0.37 16 9 C 0.25 2.49 8.21 -156.24 -1.28 1.21 16 10 N -0.28 -2.96 12.54 32.08 0.40 -2.56 16 11 N -0.04 -0.37 13.46 60.35 0.81 0.44 16 12 N -0.22 -1.28 7.90 60.35 0.48 -0.81 16 13 H 0.48 0.33 8.96 -340.34 -3.05 -2.72 16 14 N -0.28 -2.31 12.39 32.10 0.40 -1.91 16 15 N -0.52 -5.61 5.08 -5.81 -0.03 -5.64 16 16 H 0.43 4.16 4.88 -40.82 -0.20 3.96 16 17 C 0.13 2.29 3.35 -66.10 -0.22 2.07 16 18 H 0.11 2.10 7.01 -51.93 -0.36 1.74 16 19 C -0.15 -2.85 6.65 -24.59 -0.16 -3.01 16 20 C 0.15 3.65 5.89 -2.51 -0.01 3.64 16 21 N -0.60 -15.10 3.40 -170.04 -0.58 -15.68 16 22 C -0.22 -6.13 10.27 -15.06 -0.15 -6.29 16 23 H 0.08 2.05 7.83 -52.49 -0.41 1.64 16 24 C -0.01 -0.27 5.49 -17.43 -0.10 -0.36 16 25 N -0.92 -26.44 10.09 55.49 0.56 -25.88 16 26 Si 0.92 21.79 29.55 -169.99 -5.02 16.77 16 27 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 28 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 29 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 30 C 0.13 2.65 6.76 -3.07 -0.02 2.63 16 31 H 0.06 0.64 7.71 -51.93 -0.40 0.24 16 32 H 0.07 0.69 5.19 -51.93 -0.27 0.43 16 33 H 0.10 1.34 6.18 -51.93 -0.32 1.02 16 34 H 0.16 1.61 8.06 -52.48 -0.42 1.19 16 35 H 0.15 1.15 8.06 -52.48 -0.42 0.73 16 36 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 37 H 0.06 1.13 7.34 -51.93 -0.38 0.75 16 38 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 39 H 0.11 2.92 5.88 -51.93 -0.31 2.61 16 40 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 41 H 0.03 0.56 6.02 -51.93 -0.31 0.24 16 42 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 347.81 15.07 5.24 5.24 Total: -1.00 -33.78 347.81 -8.99 -42.77 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: -7.26 Total: 0.22 kcal Atomic # 6 Polarization: 9.70 SS G_CDS: -3.57 Total: 6.13 kcal Atomic # 7 Polarization: -63.05 SS G_CDS: 1.54 Total: -61.51 kcal Atomic # 8 Polarization: -9.71 SS G_CDS: 0.08 Total: -9.63 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -33.78 -8.99 -42.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001590991522.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 238.928 kcal (2) G-P(sol) polarization free energy of solvation -33.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 205.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.771 kcal (6) G-S(sol) free energy of system = (1) + (5) 196.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds