Wall clock time and date at job start Tue Mar 31 2020 16:02:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34779 * 120.00208 * 2 1 4 4 O 1.21704 * 119.99783 * 180.10781 * 3 2 1 5 5 C 1.46600 * 119.99851 * 0.10704 * 3 2 1 6 6 C 1.38027 * 126.00968 * 190.17212 * 5 3 2 7 7 C 1.39393 * 107.43266 * 180.02562 * 6 5 3 8 8 C 1.37757 * 107.65370 * 359.97438 * 7 6 5 9 9 C 1.47915 * 125.82192 * 180.02562 * 8 7 6 10 10 N 1.34203 * 126.70046 * 180.02562 * 9 8 7 11 11 N 1.28985 * 107.24679 * 180.02562 * 10 9 8 12 12 N 1.28717 * 108.99986 * 359.97438 * 11 10 9 13 13 H 0.96994 * 125.31949 * 179.97438 * 12 11 10 14 14 N 1.28878 * 109.36389 * 359.73192 * 12 11 10 15 15 N 1.36394 * 108.35417 * 359.73793 * 8 7 6 16 16 H 0.97005 * 125.70600 * 180.26283 * 15 8 7 17 17 C 1.46501 * 119.99771 * 179.97438 * 2 1 3 18 18 H 1.09002 * 110.77866 * 176.76748 * 17 2 1 19 19 C 1.55156 * 110.72071 * 299.99810 * 17 2 1 20 20 C 1.54906 * 101.61658 * 153.84516 * 19 17 2 21 21 N 1.47470 * 104.81272 * 323.04875 * 20 19 17 22 22 C 1.36943 * 125.62663 * 204.04635 * 21 20 19 23 23 H 1.07996 * 119.99493 * 180.02562 * 22 21 20 24 24 C 1.38806 * 119.99976 * 0.02562 * 22 21 20 25 25 N 1.31620 * 120.00280 * 359.97438 * 24 22 21 26 26 Si 1.86803 * 119.99769 * 179.97438 * 24 22 21 27 27 H 1.48502 * 109.47090 * 89.99861 * 26 24 22 28 28 H 1.48505 * 109.47118 * 209.99611 * 26 24 22 29 29 H 1.48493 * 109.47141 * 329.99634 * 26 24 22 30 30 C 1.47014 * 108.72116 * 24.06468 * 21 20 19 31 31 H 1.08994 * 109.47173 * 276.29835 * 1 2 3 32 32 H 1.09003 * 109.46921 * 36.30243 * 1 2 3 33 33 H 1.08997 * 109.46920 * 156.29588 * 1 2 3 34 34 H 1.08006 * 126.28854 * 359.96119 * 6 5 3 35 35 H 1.08005 * 126.17701 * 180.02562 * 7 6 5 36 36 H 1.08993 * 111.00709 * 271.94289 * 19 17 2 37 37 H 1.09001 * 111.00422 * 35.75765 * 19 17 2 38 38 H 1.09005 * 110.36847 * 81.85145 * 20 19 17 39 39 H 1.09000 * 110.37193 * 204.16922 * 20 19 17 40 40 H 0.97000 * 120.00172 * 180.02562 * 25 24 22 41 41 H 1.08999 * 109.88532 * 239.55532 * 30 21 20 42 42 H 1.09007 * 109.88257 * 118.39563 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3560 1.1671 -0.0020 5 6 1.4060 2.4368 0.0024 6 6 1.9516 3.6892 -0.1945 7 6 0.9127 4.6150 -0.1130 8 6 -0.2500 3.9176 0.1313 9 6 -1.5967 4.5084 0.2902 10 7 -2.7397 3.8469 0.5287 11 7 -3.6823 4.7246 0.5980 12 7 -3.1791 5.8952 0.4149 13 1 -3.6782 6.7269 0.4186 14 7 -1.9079 5.7899 0.2311 15 7 0.0515 2.5889 0.1952 16 1 -0.5822 1.8716 0.3531 17 6 2.1975 -1.2688 0.0006 18 1 3.2720 -1.0950 -0.0570 19 6 1.8436 -2.1064 1.2577 20 6 2.1163 -3.5475 0.7593 21 7 1.6777 -3.5488 -0.6487 22 6 1.2890 -4.6512 -1.3620 23 1 0.9842 -4.5473 -2.3929 24 6 1.2868 -5.9020 -0.7602 25 7 1.6587 -6.0286 0.4960 26 14 0.7558 -7.4057 -1.7332 27 1 1.9381 -8.0047 -2.4030 28 1 0.1504 -8.4020 -0.8133 29 1 -0.2431 -7.0057 -2.7565 30 6 1.7273 -2.1712 -1.1596 31 1 -0.3633 0.1127 1.0214 32 1 -0.3633 0.8282 -0.6084 33 1 -0.3633 -0.9409 -0.4131 34 1 2.9927 3.9114 -0.3771 35 1 1.0028 5.6857 -0.2224 36 1 2.4957 -1.8519 2.0931 37 1 0.7958 -1.9789 1.5299 38 1 3.1799 -3.7768 0.8252 39 1 1.5361 -4.2656 1.3388 40 1 1.6575 -6.9028 0.9164 41 1 0.7358 -1.8627 -1.4909 42 1 2.4333 -2.1081 -1.9878 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001590991522.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:02:58 Heat of formation + Delta-G solvation = 172.280607 kcal Electronic energy + Delta-G solvation = -27693.830447 eV Core-core repulsion = 23714.055820 eV Total energy + Delta-G solvation = -3979.774627 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.150 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -45.51657 -42.60971 -40.67976 -38.89409 -36.50239 -35.43664 -34.53424 -34.12009 -32.36317 -31.26567 -30.43638 -29.04125 -28.21697 -26.61113 -25.71098 -25.38044 -23.27034 -22.14545 -22.02675 -21.10690 -20.94521 -20.17763 -18.98589 -18.78052 -18.21942 -17.92462 -16.98287 -16.72451 -16.61071 -15.93055 -15.52797 -15.40396 -15.12213 -15.04191 -14.77148 -14.46902 -14.09049 -13.92800 -13.79814 -13.67470 -13.39878 -13.19361 -13.00689 -12.95867 -12.71757 -12.51981 -12.47048 -12.27578 -12.22109 -12.02131 -12.01406 -11.82658 -11.40646 -11.23515 -10.76269 -10.17009 -9.83459 -9.19148 -8.92109 -7.78253 -5.23945 -0.26706 0.14389 0.87055 1.21014 1.47947 1.49802 1.58149 1.67861 1.86825 1.94980 2.23218 2.50042 2.63495 3.17911 3.32173 3.35945 3.68839 3.83492 3.87133 3.93210 4.04758 4.19064 4.22032 4.28521 4.32858 4.39756 4.49333 4.61770 4.65976 4.86989 4.91097 4.95697 5.04460 5.12608 5.37999 5.45406 5.54929 5.57492 5.58444 5.75449 5.77176 6.10652 6.23859 6.28075 6.93563 7.03269 7.08608 7.74476 8.37790 9.23530 Molecular weight = 331.15amu Principal moments of inertia in cm(-1) A = 0.018482 B = 0.002514 C = 0.002301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1514.641888 B =11135.443813 C =12165.061518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.048 3.952 2 N -0.596 5.596 3 C 0.585 3.415 4 O -0.563 6.563 5 C -0.028 4.028 6 C -0.110 4.110 7 C -0.135 4.135 8 C 0.098 3.902 9 C 0.231 3.769 10 N -0.300 5.300 11 N -0.050 5.050 12 N -0.194 5.194 13 H 0.497 0.503 14 N -0.273 5.273 15 N -0.516 5.516 16 H 0.433 0.567 17 C 0.143 3.857 18 H 0.093 0.907 19 C -0.133 4.133 20 C 0.156 3.844 21 N -0.621 5.621 22 C -0.239 4.239 23 H 0.082 0.918 24 C -0.064 4.064 25 N -0.948 5.948 26 Si 0.981 3.019 27 H -0.289 1.289 28 H -0.292 1.292 29 H -0.268 1.268 30 C 0.128 3.872 31 H 0.084 0.916 32 H 0.089 0.911 33 H 0.092 0.908 34 H 0.164 0.836 35 H 0.178 0.822 36 H 0.078 0.922 37 H 0.078 0.922 38 H -0.012 1.012 39 H 0.081 0.919 40 H 0.248 0.752 41 H 0.046 0.954 42 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.059 27.717 0.932 29.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 N -0.327 5.327 3 C 0.376 3.624 4 O -0.442 6.442 5 C -0.144 4.144 6 C -0.137 4.137 7 C -0.162 4.162 8 C -0.022 4.022 9 C -0.049 4.049 10 N -0.173 5.173 11 N -0.045 5.045 12 N -0.046 5.046 13 H 0.357 0.643 14 N -0.127 5.127 15 N -0.122 5.122 16 H 0.283 0.717 17 C 0.039 3.961 18 H 0.111 0.889 19 C -0.172 4.172 20 C 0.031 3.969 21 N -0.348 5.348 22 C -0.368 4.368 23 H 0.100 0.900 24 C -0.257 4.257 25 N -0.598 5.598 26 Si 0.809 3.191 27 H -0.216 1.216 28 H -0.219 1.219 29 H -0.193 1.193 30 C 0.002 3.998 31 H 0.102 0.898 32 H 0.107 0.893 33 H 0.110 0.890 34 H 0.182 0.818 35 H 0.195 0.805 36 H 0.096 0.904 37 H 0.097 0.903 38 H 0.006 0.994 39 H 0.099 0.901 40 H 0.058 0.942 41 H 0.063 0.937 42 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges -10.274 27.283 1.087 29.174 hybrid contribution -0.135 -1.096 -0.400 1.174 sum -10.410 26.188 0.687 28.189 Atomic orbital electron populations 1.22419 0.78603 1.05107 1.03290 1.47718 1.07663 1.05032 1.72241 1.17362 0.86510 0.82464 0.76113 1.90825 1.13930 1.86986 1.52464 1.20252 0.82735 0.95026 1.16431 1.21470 1.00721 0.89084 1.02391 1.21373 0.88656 1.00786 1.05421 1.17161 0.88868 0.83824 1.12315 1.22455 0.93255 0.86558 1.02611 1.76174 0.96869 1.25167 1.19125 1.78860 1.21955 0.88940 1.14771 1.47837 1.03352 1.11260 1.42116 0.64268 1.74970 0.97320 1.19068 1.21323 1.43150 1.07797 1.07564 1.53685 0.71740 1.21870 0.96731 0.81784 0.95762 0.88901 1.23180 1.02022 0.95518 0.96497 1.21727 0.95890 0.93825 0.85447 1.44697 1.77777 1.02283 1.10030 1.19428 1.36580 0.85726 0.95051 0.90030 1.25625 1.02215 1.00290 0.97546 1.70022 1.54865 1.22567 1.12313 0.85041 0.77749 0.78878 0.77407 1.21641 1.21850 1.19269 1.21633 0.98554 0.84923 0.94687 0.89769 0.89285 0.88992 0.81824 0.80459 0.90379 0.90340 0.99438 0.90067 0.94192 0.93674 0.96322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.06 7.62 127.77 0.97 2.03 16 2 N -0.60 -17.42 2.89 -820.75 -2.37 -19.79 16 3 C 0.59 17.72 7.64 86.42 0.66 18.38 16 4 O -0.56 -20.97 16.27 -4.36 -0.07 -21.04 16 5 C -0.03 -0.66 6.65 40.36 0.27 -0.40 16 6 C -0.11 -2.26 10.62 22.50 0.24 -2.02 16 7 C -0.13 -2.25 10.79 22.43 0.24 -2.01 16 8 C 0.10 1.81 7.12 40.89 0.29 2.10 16 9 C 0.23 4.09 8.21 137.11 1.13 5.21 16 10 N -0.30 -5.76 12.54 -52.41 -0.66 -6.42 16 11 N -0.05 -0.75 13.46 37.02 0.50 -0.25 16 12 N -0.19 -1.63 7.90 37.02 0.29 -1.34 16 13 H 0.50 -0.92 8.96 -347.51 -3.11 -4.04 16 14 N -0.27 -3.66 12.39 -52.36 -0.65 -4.31 16 15 N -0.52 -10.05 5.08 -172.29 -0.88 -10.92 16 16 H 0.43 7.45 4.88 -92.70 -0.45 7.00 16 17 C 0.14 5.17 3.35 46.18 0.15 5.33 16 18 H 0.09 3.69 7.01 -2.39 -0.02 3.67 16 19 C -0.13 -4.96 6.65 31.98 0.21 -4.75 16 20 C 0.16 7.70 5.89 86.85 0.51 8.21 16 21 N -0.62 -31.78 3.40 -691.90 -2.35 -34.13 16 22 C -0.24 -13.26 10.27 84.03 0.86 -12.40 16 23 H 0.08 4.33 7.83 -2.91 -0.02 4.31 16 24 C -0.06 -3.60 5.49 84.86 0.47 -3.13 16 25 N -0.95 -55.94 10.09 21.65 0.22 -55.72 16 26 Si 0.98 45.22 29.55 68.60 2.03 47.25 16 27 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 28 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 29 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 30 C 0.13 5.32 6.76 86.73 0.59 5.91 16 31 H 0.08 1.51 7.71 -2.39 -0.02 1.49 16 32 H 0.09 1.61 5.19 -2.39 -0.01 1.60 16 33 H 0.09 2.26 6.18 -2.39 -0.01 2.24 16 34 H 0.16 3.10 8.06 -2.91 -0.02 3.08 16 35 H 0.18 2.04 8.06 -2.91 -0.02 2.01 16 36 H 0.08 2.69 8.14 -2.39 -0.02 2.67 16 37 H 0.08 2.70 7.34 -2.39 -0.02 2.68 16 38 H -0.01 -0.67 8.14 -2.38 -0.02 -0.69 16 39 H 0.08 4.49 5.88 -2.39 -0.01 4.48 16 40 H 0.25 14.23 8.31 -92.71 -0.77 13.45 16 41 H 0.05 1.74 6.02 -2.39 -0.01 1.73 16 42 H 0.02 0.81 8.14 -2.38 -0.02 0.79 16 Total: -1.00 -74.21 347.81 0.21 -74.01 By element: Atomic # 1 Polarization: 12.67 SS G_CDS: -2.45 Total: 10.21 kcal Atomic # 6 Polarization: 15.87 SS G_CDS: 6.59 Total: 22.46 kcal Atomic # 7 Polarization: -127.00 SS G_CDS: -5.89 Total: -132.89 kcal Atomic # 8 Polarization: -20.97 SS G_CDS: -0.07 Total: -21.04 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.25 kcal Total: -74.21 0.21 -74.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001590991522.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 246.287 kcal (2) G-P(sol) polarization free energy of solvation -74.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 172.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.006 kcal (6) G-S(sol) free energy of system = (1) + (5) 172.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds