Wall clock time and date at job start Tue Mar 31 2020 16:38:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86797 * 119.99957 * 2 1 4 4 H 1.48501 * 109.47317 * 265.38468 * 3 2 1 5 5 H 1.48500 * 109.47235 * 25.38694 * 3 2 1 6 6 H 1.48500 * 109.46986 * 145.38779 * 3 2 1 7 7 C 1.38809 * 119.99755 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00330 * 343.43480 * 7 2 1 9 9 N 1.36945 * 119.99937 * 163.43619 * 7 2 1 10 10 C 1.48141 * 127.83862 * 160.87665 * 9 7 2 11 11 C 1.54393 * 104.61589 * 140.41411 * 10 9 7 12 12 H 1.09003 * 117.61410 * 244.78396 * 11 10 9 13 13 C 1.54282 * 104.96098 * 23.86778 * 11 10 9 14 14 H 1.08996 * 121.81661 * 223.07835 * 13 11 10 15 15 C 1.48143 * 127.83426 * 340.87837 * 9 7 2 16 16 C 1.52998 * 118.12360 * 87.19420 * 11 10 9 17 17 H 1.09002 * 117.43993 * 16.10101 * 16 11 10 18 18 N 1.46489 * 117.44724 * 160.80751 * 16 11 10 19 19 C 1.34779 * 120.00423 * 224.23887 * 18 16 11 20 20 O 1.21609 * 119.99611 * 359.97438 * 19 18 16 21 21 C 1.47422 * 119.99829 * 179.97438 * 19 18 16 22 22 C 1.36092 * 126.44373 * 180.02562 * 21 19 18 23 23 O 1.34251 * 106.94916 * 179.97438 * 22 21 19 24 24 C 1.34051 * 108.23033 * 359.97438 * 23 22 21 25 25 C 1.50694 * 125.38383 * 180.02562 * 24 23 22 26 26 C 1.54273 * 110.02754 * 57.88437 * 25 24 23 27 27 C 1.54964 * 104.15803 * 217.13304 * 26 25 24 28 28 C 1.54889 * 102.77697 * 37.89166 * 27 26 25 29 29 C 1.53869 * 110.03471 * 300.66973 * 25 24 23 30 30 N 1.29939 * 109.23949 * 359.74740 * 24 23 22 31 31 H 0.97002 * 119.99885 * 359.97438 * 1 2 3 32 32 H 1.08994 * 110.40776 * 259.19545 * 10 9 7 33 33 H 1.09003 * 110.40887 * 21.63063 * 10 9 7 34 34 H 1.09001 * 110.40962 * 338.36857 * 15 9 7 35 35 H 1.08994 * 110.41268 * 100.80330 * 15 9 7 36 36 H 0.97006 * 119.99756 * 44.23769 * 18 16 11 37 37 H 1.08003 * 126.52363 * 0.02562 * 22 21 19 38 38 H 1.08999 * 110.01962 * 179.27534 * 25 24 23 39 39 H 1.08999 * 110.48730 * 335.78516 * 26 25 24 40 40 H 1.09005 * 110.48334 * 98.43070 * 26 25 24 41 41 H 1.09001 * 110.72387 * 279.57652 * 27 26 25 42 42 H 1.09000 * 110.92026 * 156.29449 * 27 26 25 43 43 H 1.08995 * 110.48536 * 203.39912 * 28 27 26 44 44 H 1.09003 * 110.60121 * 80.81153 * 28 27 26 45 45 H 1.09001 * 110.03539 * 238.56629 * 29 25 24 46 46 H 1.08997 * 110.03325 * 359.97438 * 29 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.5952 1.9901 -1.3955 5 1 1.4023 2.6788 0.6002 6 1 3.4956 1.4702 0.7953 7 6 2.0102 -1.2022 -0.0005 8 1 1.5038 -2.1182 0.2657 9 7 3.3370 -1.2266 -0.3387 10 6 4.3319 -2.2824 -0.0386 11 6 5.1890 -2.3853 -1.3186 12 1 5.1497 -3.3192 -1.8793 13 6 5.0380 -1.0144 -2.0102 14 1 4.8863 -0.9272 -3.0861 15 6 4.1029 -0.2033 -1.0875 16 6 6.3948 -1.4536 -1.4560 17 1 6.7526 -0.9587 -0.5531 18 7 7.4301 -1.8273 -2.4227 19 6 8.7318 -1.7336 -2.0861 20 8 9.0469 -1.3385 -0.9800 21 6 9.7736 -2.1102 -3.0588 22 6 11.1192 -2.0679 -2.8594 23 8 11.6966 -2.4936 -3.9941 24 6 10.7278 -2.7915 -4.8715 25 6 10.9460 -3.3062 -6.2709 26 6 11.7590 -4.6167 -6.2311 27 6 12.6834 -4.5271 -7.4717 28 6 13.0684 -3.0272 -7.5043 29 6 11.7779 -2.2960 -7.0803 30 7 9.5707 -2.5720 -4.3226 31 1 -0.4850 0.8401 0.0004 32 1 4.9504 -1.9915 0.8105 33 1 3.8319 -3.2302 0.1612 34 1 3.4302 0.4176 -1.6791 35 1 4.6857 0.4123 -0.4023 36 1 7.1788 -2.1422 -3.3051 37 1 11.6259 -1.7528 -1.9592 38 1 9.9867 -3.4765 -6.7597 39 1 12.3510 -4.6708 -5.3175 40 1 11.0967 -5.4789 -6.3095 41 1 12.1433 -4.8071 -8.3762 42 1 13.5683 -5.1504 -7.3434 43 1 13.3618 -2.7306 -8.5113 44 1 13.8727 -2.8222 -6.7977 45 1 11.2227 -1.9767 -7.9623 46 1 12.0235 -1.4333 -6.4611 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000962170708.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:38:01 Heat of formation + Delta-G solvation = 42.906994 kcal Electronic energy + Delta-G solvation = -27323.541150 eV Core-core repulsion = 23409.404055 eV Total energy + Delta-G solvation = -3914.137096 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -43.82310 -39.93568 -38.69300 -38.45638 -35.23183 -34.64883 -32.65632 -31.73423 -30.75182 -29.31558 -28.56993 -27.80356 -26.02595 -24.40395 -22.89168 -21.91875 -21.26484 -20.94261 -20.73989 -19.93379 -19.61201 -18.23965 -17.18156 -16.99297 -16.92836 -16.45597 -16.20811 -15.86392 -15.14971 -14.80707 -14.53576 -14.35108 -13.92912 -13.87344 -13.66191 -13.56149 -12.91870 -12.53693 -12.39711 -12.22542 -12.12810 -11.79328 -11.71163 -11.65628 -11.51708 -11.32283 -11.22617 -11.17747 -11.14740 -11.03917 -10.74207 -10.36183 -10.17168 -10.06267 -9.57086 -9.35812 -9.32713 -8.81705 -8.58238 -7.12617 -5.93413 -3.27747 0.79149 1.66190 2.16923 2.86155 3.07155 3.32955 3.39532 3.48582 3.50248 3.96084 3.99661 4.08947 4.27584 4.50974 4.53086 4.54157 4.81000 4.83907 4.86315 4.89364 4.95678 5.08307 5.11419 5.13089 5.17277 5.27465 5.32809 5.33815 5.35980 5.48856 5.52917 5.58312 5.64914 5.70477 5.74585 5.76198 5.78278 6.00735 6.23542 6.48330 6.54266 6.56214 6.65710 6.78883 7.08938 7.46250 7.58806 8.04617 8.31325 8.77216 9.65404 10.19265 11.22739 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.026105 B = 0.002057 C = 0.002029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.353000 B =13611.734185 C =13796.145114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.018 3.982 3 Si 0.888 3.112 4 H -0.286 1.286 5 H -0.302 1.302 6 H -0.270 1.270 7 C -0.235 4.235 8 H 0.096 0.904 9 N -0.604 5.604 10 C 0.158 3.842 11 C -0.177 4.177 12 H 0.111 0.889 13 C -0.175 4.175 14 H 0.112 0.888 15 C 0.130 3.870 16 C 0.101 3.899 17 H 0.136 0.864 18 N -0.679 5.679 19 C 0.605 3.395 20 O -0.534 6.534 21 C -0.068 4.068 22 C 0.012 3.988 23 O -0.193 6.193 24 C 0.207 3.793 25 C 0.002 3.998 26 C -0.121 4.121 27 C -0.124 4.124 28 C -0.125 4.125 29 C -0.120 4.120 30 N -0.460 5.460 31 H 0.264 0.736 32 H 0.034 0.966 33 H 0.063 0.937 34 H 0.073 0.927 35 H 0.038 0.962 36 H 0.409 0.591 37 H 0.232 0.768 38 H 0.118 0.882 39 H 0.073 0.927 40 H 0.078 0.922 41 H 0.072 0.928 42 H 0.072 0.928 43 H 0.071 0.929 44 H 0.069 0.931 45 H 0.079 0.921 46 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.213 -8.082 -16.271 34.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.180 4.180 3 Si 0.719 3.281 4 H -0.214 1.214 5 H -0.230 1.230 6 H -0.196 1.196 7 C -0.362 4.362 8 H 0.113 0.887 9 N -0.329 5.329 10 C 0.032 3.968 11 C -0.199 4.199 12 H 0.129 0.871 13 C -0.196 4.196 14 H 0.130 0.870 15 C 0.004 3.996 16 C -0.005 4.005 17 H 0.153 0.847 18 N -0.326 5.326 19 C 0.390 3.610 20 O -0.411 6.411 21 C -0.188 4.188 22 C -0.062 4.062 23 O -0.079 6.079 24 C -0.003 4.003 25 C -0.017 4.017 26 C -0.159 4.159 27 C -0.161 4.161 28 C -0.163 4.163 29 C -0.159 4.159 30 N -0.189 5.189 31 H 0.074 0.926 32 H 0.052 0.948 33 H 0.081 0.919 34 H 0.091 0.909 35 H 0.055 0.945 36 H 0.245 0.755 37 H 0.248 0.752 38 H 0.136 0.864 39 H 0.092 0.908 40 H 0.097 0.903 41 H 0.091 0.909 42 H 0.091 0.909 43 H 0.089 0.911 44 H 0.087 0.913 45 H 0.098 0.902 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 28.518 -7.800 -15.695 33.473 hybrid contribution 0.771 0.959 -0.119 1.236 sum 29.289 -6.841 -15.814 33.982 Atomic orbital electron populations 1.69772 1.05413 1.26582 1.54013 1.25013 0.95302 0.97519 1.00159 0.86910 0.79352 0.84371 0.77513 1.21372 1.22998 1.19552 1.18665 0.80961 0.95095 1.41475 0.88684 1.45553 1.06169 1.19283 1.61870 1.21139 0.89941 0.93686 0.92081 1.24410 0.99087 0.94623 1.01741 0.87123 1.24323 0.95867 0.99474 0.99943 0.87039 1.21682 0.92739 0.92332 0.92847 1.21875 0.82293 1.01863 0.94456 0.84667 1.45145 1.04502 1.65439 1.17562 1.16677 0.81571 0.77577 0.85164 1.90836 1.81977 1.47145 1.21148 1.21789 0.94038 1.09462 0.93553 1.25317 0.92698 0.98760 0.89445 1.84366 1.39170 1.62915 1.21423 1.26205 0.80187 0.99243 0.94616 1.20511 1.02333 0.95507 0.83361 1.22517 0.98114 0.95691 0.99557 1.22516 0.99329 0.96527 0.97748 1.22387 0.97151 0.94991 1.01730 1.22258 0.96154 0.97682 0.99783 1.70792 1.26122 1.15816 1.06220 0.92641 0.94777 0.91887 0.90914 0.94477 0.75533 0.75183 0.86378 0.90788 0.90336 0.90888 0.90934 0.91064 0.91259 0.90226 0.91159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.40 13.97 55.49 0.78 -27.63 16 2 C 0.02 0.54 5.49 -17.43 -0.10 0.44 16 3 Si 0.89 22.88 24.49 -169.99 -4.16 18.72 16 4 H -0.29 -7.09 6.35 56.52 0.36 -6.73 16 5 H -0.30 -7.87 7.11 56.52 0.40 -7.47 16 6 H -0.27 -6.84 6.33 56.52 0.36 -6.49 16 7 C -0.24 -6.73 10.78 -15.06 -0.16 -6.90 16 8 H 0.10 2.86 8.06 -52.49 -0.42 2.44 16 9 N -0.60 -14.84 3.19 -168.86 -0.54 -15.38 16 10 C 0.16 3.18 7.04 -2.41 -0.02 3.16 16 11 C -0.18 -3.02 7.06 -89.22 -0.63 -3.65 16 12 H 0.11 1.71 8.14 -51.93 -0.42 1.29 16 13 C -0.17 -3.11 7.06 -89.22 -0.63 -3.74 16 14 H 0.11 1.81 8.14 -51.93 -0.42 1.39 16 15 C 0.13 2.87 4.49 -2.41 -0.01 2.86 16 16 C 0.10 1.64 5.98 -67.94 -0.41 1.23 16 17 H 0.14 2.39 7.40 -51.93 -0.38 2.01 16 18 N -0.68 -9.61 5.56 -54.89 -0.31 -9.91 16 19 C 0.60 8.86 7.81 -12.52 -0.10 8.76 16 20 O -0.53 -9.19 16.45 5.27 0.09 -9.10 16 21 C -0.07 -0.84 6.99 -83.02 -0.58 -1.42 16 22 C 0.01 0.11 11.95 29.96 0.36 0.47 16 23 O -0.19 -1.76 10.57 6.52 0.07 -1.69 16 24 C 0.21 1.91 6.50 -13.08 -0.08 1.82 16 25 C 0.00 0.01 3.44 -90.66 -0.31 -0.30 16 26 C -0.12 -0.60 6.36 -25.03 -0.16 -0.75 16 27 C -0.12 -0.45 6.91 -24.70 -0.17 -0.63 16 28 C -0.13 -0.50 6.83 -25.07 -0.17 -0.67 16 29 C -0.12 -0.61 6.45 -25.61 -0.17 -0.77 16 30 N -0.46 -5.30 11.06 -7.65 -0.08 -5.38 16 31 H 0.26 7.78 8.31 -40.82 -0.34 7.45 16 32 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 34 H 0.07 1.72 5.06 -51.93 -0.26 1.46 16 35 H 0.04 0.83 6.79 -51.93 -0.35 0.48 16 36 H 0.41 5.16 8.56 -40.82 -0.35 4.81 16 37 H 0.23 1.56 8.06 -52.48 -0.42 1.14 16 38 H 0.12 0.66 8.14 -51.93 -0.42 0.23 16 39 H 0.07 0.42 7.72 -51.93 -0.40 0.02 16 40 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 41 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 42 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 43 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 44 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 45 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 46 H 0.07 0.43 7.67 -51.93 -0.40 0.03 16 LS Contribution 373.38 15.07 5.63 5.63 Total: -1.00 -33.85 373.38 -8.73 -42.59 By element: Atomic # 1 Polarization: 9.11 SS G_CDS: -6.87 Total: 2.24 kcal Atomic # 6 Polarization: 3.25 SS G_CDS: -3.33 Total: -0.08 kcal Atomic # 7 Polarization: -58.15 SS G_CDS: -0.15 Total: -58.30 kcal Atomic # 8 Polarization: -10.95 SS G_CDS: 0.16 Total: -10.79 kcal Atomic # 14 Polarization: 22.88 SS G_CDS: -4.16 Total: 18.72 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -33.85 -8.73 -42.59 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000962170708.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.496 kcal (2) G-P(sol) polarization free energy of solvation -33.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.589 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds