Wall clock time and date at job start Tue Mar 31 2020 16:38:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86797 * 119.99957 * 2 1 4 4 H 1.48501 * 109.47317 * 265.38468 * 3 2 1 5 5 H 1.48500 * 109.47235 * 25.38694 * 3 2 1 6 6 H 1.48500 * 109.46986 * 145.38779 * 3 2 1 7 7 C 1.38809 * 119.99755 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00330 * 343.43480 * 7 2 1 9 9 N 1.36945 * 119.99937 * 163.43619 * 7 2 1 10 10 C 1.48141 * 127.83862 * 160.87665 * 9 7 2 11 11 C 1.54393 * 104.61589 * 140.41411 * 10 9 7 12 12 H 1.09003 * 117.61410 * 244.78396 * 11 10 9 13 13 C 1.54282 * 104.96098 * 23.86778 * 11 10 9 14 14 H 1.08996 * 121.81661 * 223.07835 * 13 11 10 15 15 C 1.48143 * 127.83426 * 340.87837 * 9 7 2 16 16 C 1.52998 * 118.12360 * 87.19420 * 11 10 9 17 17 H 1.09002 * 117.43993 * 16.10101 * 16 11 10 18 18 N 1.46489 * 117.44724 * 160.80751 * 16 11 10 19 19 C 1.34779 * 120.00423 * 224.23887 * 18 16 11 20 20 O 1.21609 * 119.99611 * 359.97438 * 19 18 16 21 21 C 1.47422 * 119.99829 * 179.97438 * 19 18 16 22 22 C 1.36092 * 126.44373 * 180.02562 * 21 19 18 23 23 O 1.34251 * 106.94916 * 179.97438 * 22 21 19 24 24 C 1.34051 * 108.23033 * 359.97438 * 23 22 21 25 25 C 1.50694 * 125.38383 * 180.02562 * 24 23 22 26 26 C 1.54273 * 110.02754 * 57.88437 * 25 24 23 27 27 C 1.54964 * 104.15803 * 217.13304 * 26 25 24 28 28 C 1.54889 * 102.77697 * 37.89166 * 27 26 25 29 29 C 1.53869 * 110.03471 * 300.66973 * 25 24 23 30 30 N 1.29939 * 109.23949 * 359.74740 * 24 23 22 31 31 H 0.97002 * 119.99885 * 359.97438 * 1 2 3 32 32 H 1.08994 * 110.40776 * 259.19545 * 10 9 7 33 33 H 1.09003 * 110.40887 * 21.63063 * 10 9 7 34 34 H 1.09001 * 110.40962 * 338.36857 * 15 9 7 35 35 H 1.08994 * 110.41268 * 100.80330 * 15 9 7 36 36 H 0.97006 * 119.99756 * 44.23769 * 18 16 11 37 37 H 1.08003 * 126.52363 * 0.02562 * 22 21 19 38 38 H 1.08999 * 110.01962 * 179.27534 * 25 24 23 39 39 H 1.08999 * 110.48730 * 335.78516 * 26 25 24 40 40 H 1.09005 * 110.48334 * 98.43070 * 26 25 24 41 41 H 1.09001 * 110.72387 * 279.57652 * 27 26 25 42 42 H 1.09000 * 110.92026 * 156.29449 * 27 26 25 43 43 H 1.08995 * 110.48536 * 203.39912 * 28 27 26 44 44 H 1.09003 * 110.60121 * 80.81153 * 28 27 26 45 45 H 1.09001 * 110.03539 * 238.56629 * 29 25 24 46 46 H 1.08997 * 110.03325 * 359.97438 * 29 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.5952 1.9901 -1.3955 5 1 1.4023 2.6788 0.6002 6 1 3.4956 1.4702 0.7953 7 6 2.0102 -1.2022 -0.0005 8 1 1.5038 -2.1182 0.2657 9 7 3.3370 -1.2266 -0.3387 10 6 4.3319 -2.2824 -0.0386 11 6 5.1890 -2.3853 -1.3186 12 1 5.1497 -3.3192 -1.8793 13 6 5.0380 -1.0144 -2.0102 14 1 4.8863 -0.9272 -3.0861 15 6 4.1029 -0.2033 -1.0875 16 6 6.3948 -1.4536 -1.4560 17 1 6.7526 -0.9587 -0.5531 18 7 7.4301 -1.8273 -2.4227 19 6 8.7318 -1.7336 -2.0861 20 8 9.0469 -1.3385 -0.9800 21 6 9.7736 -2.1102 -3.0588 22 6 11.1192 -2.0679 -2.8594 23 8 11.6966 -2.4936 -3.9941 24 6 10.7278 -2.7915 -4.8715 25 6 10.9460 -3.3062 -6.2709 26 6 11.7590 -4.6167 -6.2311 27 6 12.6834 -4.5271 -7.4717 28 6 13.0684 -3.0272 -7.5043 29 6 11.7779 -2.2960 -7.0803 30 7 9.5707 -2.5720 -4.3226 31 1 -0.4850 0.8401 0.0004 32 1 4.9504 -1.9915 0.8105 33 1 3.8319 -3.2302 0.1612 34 1 3.4302 0.4176 -1.6791 35 1 4.6857 0.4123 -0.4023 36 1 7.1788 -2.1422 -3.3051 37 1 11.6259 -1.7528 -1.9592 38 1 9.9867 -3.4765 -6.7597 39 1 12.3510 -4.6708 -5.3175 40 1 11.0967 -5.4789 -6.3095 41 1 12.1433 -4.8071 -8.3762 42 1 13.5683 -5.1504 -7.3434 43 1 13.3618 -2.7306 -8.5113 44 1 13.8727 -2.8222 -6.7977 45 1 11.2227 -1.9767 -7.9623 46 1 12.0235 -1.4333 -6.4611 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000962170708.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:38:00 Heat of formation + Delta-G solvation = 18.296657 kcal Electronic energy + Delta-G solvation = -27324.608335 eV Core-core repulsion = 23409.404055 eV Total energy + Delta-G solvation = -3915.204280 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -44.58449 -41.25290 -39.95870 -38.97573 -36.29136 -35.99064 -34.41605 -32.74845 -32.21890 -29.65960 -29.46869 -29.16310 -27.79801 -25.57743 -23.58740 -23.32555 -22.29223 -21.99376 -21.53528 -21.16667 -20.70828 -19.13831 -18.93350 -17.96076 -17.87352 -17.69649 -17.07906 -16.71739 -16.36123 -15.96044 -15.73488 -15.52717 -15.23081 -14.95193 -14.71962 -14.49658 -14.32017 -14.27172 -13.82783 -13.44257 -13.17771 -12.91180 -12.72245 -12.56049 -12.45948 -12.27436 -12.13355 -12.03483 -11.99564 -11.94278 -11.82496 -11.69706 -11.56811 -11.48347 -11.44001 -10.98387 -10.84732 -10.17221 -9.84342 -9.17479 -8.18977 -5.50031 -0.02709 0.82946 1.26898 1.37923 1.44797 1.46290 1.77041 2.02270 2.38047 2.64751 2.70882 3.02963 3.23218 3.49212 3.56103 3.62854 3.63398 3.72875 3.78120 3.93269 4.03231 4.21181 4.28716 4.42538 4.44342 4.46399 4.52094 4.53444 4.60579 4.66990 4.71616 4.73621 4.78848 4.92557 4.93201 4.93891 5.07282 5.09629 5.18166 5.24023 5.28026 5.31700 5.35444 5.49033 5.56044 6.08147 6.17636 6.48499 6.63995 6.93600 7.45447 8.09465 9.00828 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.026105 B = 0.002057 C = 0.002029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.353000 B =13611.734185 C =13796.145114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.960 5.960 2 C -0.040 4.040 3 Si 0.948 3.052 4 H -0.270 1.270 5 H -0.307 1.307 6 H -0.264 1.264 7 C -0.226 4.226 8 H 0.066 0.934 9 N -0.626 5.626 10 C 0.152 3.848 11 C -0.166 4.166 12 H 0.134 0.866 13 C -0.174 4.174 14 H 0.133 0.867 15 C 0.124 3.876 16 C 0.123 3.877 17 H 0.124 0.876 18 N -0.671 5.671 19 C 0.607 3.393 20 O -0.564 6.564 21 C -0.099 4.099 22 C 0.032 3.968 23 O -0.190 6.190 24 C 0.213 3.787 25 C 0.000 4.000 26 C -0.119 4.119 27 C -0.119 4.119 28 C -0.124 4.124 29 C -0.119 4.119 30 N -0.481 5.481 31 H 0.263 0.737 32 H 0.040 0.960 33 H 0.065 0.935 34 H 0.057 0.943 35 H 0.037 0.963 36 H 0.419 0.581 37 H 0.257 0.743 38 H 0.125 0.875 39 H 0.065 0.935 40 H 0.083 0.917 41 H 0.082 0.918 42 H 0.078 0.922 43 H 0.081 0.919 44 H 0.064 0.936 45 H 0.090 0.910 46 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 32.347 -8.464 -18.201 38.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.607 5.607 2 C -0.234 4.234 3 Si 0.777 3.223 4 H -0.197 1.197 5 H -0.236 1.236 6 H -0.189 1.189 7 C -0.354 4.354 8 H 0.084 0.916 9 N -0.351 5.351 10 C 0.027 3.973 11 C -0.187 4.187 12 H 0.152 0.848 13 C -0.195 4.195 14 H 0.150 0.850 15 C -0.001 4.001 16 C 0.016 3.984 17 H 0.142 0.858 18 N -0.320 5.320 19 C 0.394 3.606 20 O -0.443 6.443 21 C -0.217 4.217 22 C -0.043 4.043 23 O -0.075 6.075 24 C 0.003 3.997 25 C -0.019 4.019 26 C -0.157 4.157 27 C -0.157 4.157 28 C -0.161 4.161 29 C -0.157 4.157 30 N -0.211 5.211 31 H 0.072 0.928 32 H 0.058 0.942 33 H 0.083 0.917 34 H 0.075 0.925 35 H 0.055 0.945 36 H 0.256 0.744 37 H 0.273 0.727 38 H 0.143 0.857 39 H 0.084 0.916 40 H 0.102 0.898 41 H 0.100 0.900 42 H 0.097 0.903 43 H 0.100 0.900 44 H 0.083 0.917 45 H 0.108 0.892 46 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 31.702 -8.206 -17.661 37.206 hybrid contribution -0.112 0.965 0.470 1.080 sum 31.591 -7.241 -17.190 36.687 Atomic orbital electron populations 1.69899 1.06994 1.27260 1.56515 1.25658 0.95974 1.00804 1.00984 0.85925 0.77996 0.80094 0.78278 1.19664 1.23558 1.18907 1.18596 0.82853 0.94031 1.39954 0.91648 1.45650 1.05579 1.21048 1.62789 1.21293 0.89568 0.92580 0.93891 1.24294 0.99085 0.95366 0.99984 0.84846 1.24142 0.96360 0.98807 1.00167 0.84972 1.21677 0.92954 0.92260 0.93198 1.21519 0.82125 1.00540 0.94182 0.85827 1.45005 1.04065 1.65343 1.17541 1.16939 0.81842 0.76679 0.85140 1.90818 1.82427 1.48560 1.22528 1.21540 0.94256 1.12026 0.93915 1.25809 0.92040 0.96502 0.89927 1.84414 1.39077 1.62704 1.21334 1.26841 0.79627 0.97897 0.95302 1.20754 1.03133 0.96260 0.81756 1.22521 0.98180 0.95170 0.99865 1.22515 0.99360 0.96363 0.97429 1.22391 0.96437 0.95094 1.02196 1.22267 0.96651 0.97051 0.99742 1.70751 1.27234 1.16929 1.06137 0.92787 0.94220 0.91678 0.92480 0.94510 0.74409 0.72696 0.85742 0.91636 0.89820 0.89954 0.90306 0.90011 0.91673 0.89181 0.92325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -61.32 13.97 21.65 0.30 -61.02 16 2 C -0.04 -2.40 5.49 84.86 0.47 -1.94 16 3 Si 0.95 47.81 24.49 68.60 1.68 49.49 16 4 H -0.27 -12.79 6.35 99.48 0.63 -12.16 16 5 H -0.31 -15.60 7.11 99.48 0.71 -14.89 16 6 H -0.26 -12.89 6.33 99.48 0.63 -12.26 16 7 C -0.23 -13.21 10.78 84.03 0.91 -12.30 16 8 H 0.07 4.11 8.06 -2.91 -0.02 4.08 16 9 N -0.63 -30.55 3.19 -688.16 -2.20 -32.75 16 10 C 0.15 5.97 7.04 86.54 0.61 6.58 16 11 C -0.17 -5.30 7.06 -9.89 -0.07 -5.37 16 12 H 0.13 3.70 8.14 -2.39 -0.02 3.68 16 13 C -0.17 -5.80 7.06 -9.88 -0.07 -5.87 16 14 H 0.13 3.90 8.14 -2.39 -0.02 3.88 16 15 C 0.12 5.34 4.49 86.54 0.39 5.73 16 16 C 0.12 3.73 5.98 44.99 0.27 4.00 16 17 H 0.12 4.16 7.40 -2.39 -0.02 4.15 16 18 N -0.67 -17.55 5.56 -445.82 -2.48 -20.03 16 19 C 0.61 16.77 7.81 86.66 0.68 17.45 16 20 O -0.56 -18.66 16.45 -4.06 -0.07 -18.73 16 21 C -0.10 -2.24 6.99 40.41 0.28 -1.96 16 22 C 0.03 0.54 11.95 67.32 0.80 1.35 16 23 O -0.19 -3.07 10.57 0.43 0.00 -3.07 16 24 C 0.21 3.53 6.50 88.39 0.57 4.11 16 25 C 0.00 0.00 3.44 -10.82 -0.04 -0.03 16 26 C -0.12 -0.92 6.36 31.70 0.20 -0.72 16 27 C -0.12 -0.57 6.91 31.91 0.22 -0.35 16 28 C -0.12 -0.70 6.83 31.67 0.22 -0.49 16 29 C -0.12 -0.95 6.45 31.32 0.20 -0.74 16 30 N -0.48 -10.22 11.06 -293.03 -3.24 -13.46 16 31 H 0.26 15.97 8.31 -92.71 -0.77 15.20 16 32 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 33 H 0.06 2.50 8.14 -2.39 -0.02 2.48 16 34 H 0.06 2.63 5.06 -2.39 -0.01 2.62 16 35 H 0.04 1.60 6.79 -2.39 -0.02 1.58 16 36 H 0.42 9.52 8.56 -92.70 -0.79 8.73 16 37 H 0.26 2.80 8.06 -2.91 -0.02 2.78 16 38 H 0.12 1.11 8.14 -2.39 -0.02 1.09 16 39 H 0.06 0.63 7.72 -2.39 -0.02 0.61 16 40 H 0.08 0.56 8.14 -2.38 -0.02 0.54 16 41 H 0.08 0.27 8.14 -2.39 -0.02 0.25 16 42 H 0.08 0.31 8.14 -2.39 -0.02 0.29 16 43 H 0.08 0.31 8.14 -2.39 -0.02 0.29 16 44 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 45 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 46 H 0.06 0.61 7.67 -2.39 -0.02 0.59 16 Total: -1.00 -73.87 373.38 -0.29 -74.16 By element: Atomic # 1 Polarization: 15.91 SS G_CDS: 0.06 Total: 15.97 kcal Atomic # 6 Polarization: 3.79 SS G_CDS: 5.64 Total: 9.43 kcal Atomic # 7 Polarization: -119.64 SS G_CDS: -7.61 Total: -127.26 kcal Atomic # 8 Polarization: -21.74 SS G_CDS: -0.06 Total: -21.80 kcal Atomic # 14 Polarization: 47.81 SS G_CDS: 1.68 Total: 49.49 kcal Total: -73.87 -0.29 -74.16 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000962170708.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.462 kcal (2) G-P(sol) polarization free energy of solvation -73.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.165 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds