Wall clock time and date at job start Tue Mar 31 2020 16:44:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86798 * 120.00073 * 2 1 4 4 H 1.48500 * 109.46972 * 274.75515 * 3 2 1 5 5 H 1.48497 * 109.47132 * 34.75390 * 3 2 1 6 6 H 1.48496 * 109.47155 * 154.75674 * 3 2 1 7 7 C 1.38813 * 119.99901 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00076 * 196.87004 * 7 2 1 9 9 N 1.36933 * 120.00076 * 16.87957 * 7 2 1 10 10 C 1.47442 * 121.97045 * 208.39542 * 9 7 2 11 11 C 1.52781 * 107.14445 * 238.38936 * 10 9 7 12 12 C 1.53069 * 110.80890 * 301.12671 * 11 10 9 13 13 H 1.09003 * 112.49752 * 288.17378 * 12 11 10 14 14 C 1.55913 * 106.85702 * 163.75673 * 12 11 10 15 15 N 1.47649 * 104.41733 * 283.02226 * 14 12 11 16 16 C 1.34768 * 125.73383 * 155.04586 * 15 14 12 17 17 O 1.21580 * 120.00002 * 0.02562 * 16 15 14 18 18 C 1.47513 * 120.00122 * 180.02562 * 16 15 14 19 19 C 1.36819 * 126.94571 * 179.70623 * 18 16 15 20 20 C 1.41266 * 103.84529 * 179.90882 * 19 18 16 21 21 C 1.50707 * 126.70411 * 180.12703 * 20 19 18 22 22 C 1.52998 * 117.49728 * 343.92877 * 21 20 19 23 23 C 1.52991 * 117.50062 * 275.30553 * 21 20 19 24 24 N 1.30126 * 106.59305 * 0.35893 * 20 19 18 25 25 O 1.20888 * 111.97775 * 359.76737 * 24 20 19 26 26 C 1.47465 * 108.53255 * 335.02628 * 15 14 12 27 27 C 1.53329 * 106.44700 * 0.55758 * 26 15 14 28 28 H 1.08998 * 108.05576 * 268.77104 * 27 26 15 29 29 C 1.46724 * 121.32608 * 27.07722 * 9 7 2 30 30 H 0.97002 * 120.00084 * 0.02562 * 1 2 3 31 31 H 1.09000 * 111.07066 * 118.48175 * 10 9 7 32 32 H 1.08996 * 109.16309 * 357.22812 * 10 9 7 33 33 H 1.08997 * 109.21110 * 180.78557 * 11 10 9 34 34 H 1.08998 * 109.17254 * 61.44377 * 11 10 9 35 35 H 1.09001 * 110.44890 * 41.74990 * 14 12 11 36 36 H 1.08998 * 110.44808 * 164.16417 * 14 12 11 37 37 H 1.08004 * 128.07741 * 0.02562 * 19 18 16 38 38 H 1.09003 * 115.54491 * 129.63017 * 21 20 19 39 39 H 1.08997 * 117.50498 * 359.97438 * 22 21 20 40 40 H 1.09003 * 117.49565 * 145.02218 * 22 21 20 41 41 H 1.09003 * 117.50290 * 214.98106 * 23 21 20 42 42 H 1.09006 * 117.49787 * 359.97438 * 23 21 20 43 43 H 1.08999 * 110.05411 * 241.31828 * 26 15 14 44 44 H 1.08993 * 110.06170 * 119.80831 * 26 15 14 45 45 H 1.09002 * 109.16308 * 7.24622 * 29 9 7 46 46 H 1.09005 * 109.15791 * 248.06730 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.3971 2.1044 -1.3953 5 1 1.5015 2.6215 0.7981 6 1 3.5943 1.4132 0.5971 7 6 2.0102 -1.2022 0.0005 8 1 3.0553 -1.2222 0.2720 9 7 1.3697 -2.3626 -0.3433 10 6 1.7874 -3.6723 0.1899 11 6 2.1339 -4.5562 -1.0071 12 6 0.9294 -4.7049 -1.9400 13 1 0.1481 -5.3351 -1.5151 14 6 1.4731 -5.2456 -3.2975 15 7 2.0848 -4.0675 -3.9440 16 6 3.0657 -4.0972 -4.8676 17 8 3.5219 -5.1624 -5.2358 18 6 3.5860 -2.8375 -5.4319 19 6 4.5763 -2.7020 -6.3662 20 6 4.6781 -1.3051 -6.5507 21 6 5.6205 -0.5858 -7.4812 22 6 6.8096 -1.3756 -8.0316 23 6 7.0333 -0.2962 -6.9706 24 7 3.8028 -0.7606 -5.7565 25 8 3.1863 -1.5884 -5.1271 26 6 1.4416 -2.8528 -3.4095 27 6 0.4046 -3.3261 -2.3841 28 1 -0.5455 -3.4595 -2.9014 29 6 0.2108 -2.3566 -1.2430 30 1 -0.4850 0.8401 -0.0004 31 1 0.9872 -4.1327 0.7694 32 1 2.6686 -3.5386 0.8173 33 1 2.4349 -5.5412 -0.6504 34 1 2.9602 -4.1060 -1.5572 35 1 2.2227 -6.0182 -3.1269 36 1 0.6573 -5.6355 -3.9062 37 1 5.1457 -3.4812 -6.8511 38 1 5.1605 0.1539 -8.1364 39 1 6.9108 -2.4153 -7.7204 40 1 7.1323 -1.1555 -9.0492 41 1 7.5032 0.6340 -7.2902 42 1 7.2812 -0.6255 -5.9615 43 1 0.9496 -2.3058 -4.2137 44 1 2.1842 -2.2189 -2.9251 45 1 0.0755 -1.3527 -1.6455 46 1 -0.6797 -2.6387 -0.6813 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088123725.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:44:06 Heat of formation + Delta-G solvation = 86.278036 kcal Electronic energy + Delta-G solvation = -29431.802941 eV Core-core repulsion = 25519.546554 eV Total energy + Delta-G solvation = -3912.256386 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -45.00601 -40.22560 -38.29876 -37.82547 -35.33308 -33.40528 -32.84178 -31.91246 -30.87345 -30.40924 -27.54505 -25.81770 -24.81363 -24.57064 -23.19271 -22.48181 -21.97287 -21.53197 -21.00902 -19.38221 -18.58917 -17.79701 -17.61820 -16.88854 -16.33946 -15.86873 -15.70364 -15.27491 -14.80302 -14.66596 -14.17772 -13.92179 -13.60249 -13.59231 -13.50479 -12.91617 -12.60120 -12.35610 -12.14968 -12.04864 -11.89063 -11.80908 -11.79454 -11.35234 -11.17236 -11.01291 -10.76497 -10.72348 -10.66847 -10.57275 -10.23140 -10.14685 -9.97586 -9.95635 -9.69319 -9.48760 -9.45041 -8.54579 -8.47112 -6.71333 -5.82108 -3.24652 0.82151 1.93957 2.59401 3.02633 3.17612 3.38296 3.38500 3.45919 3.46759 3.84368 4.32201 4.47969 4.51663 4.61666 4.78045 4.82253 4.94891 4.98504 5.17309 5.19074 5.24043 5.34552 5.37107 5.42121 5.53248 5.60352 5.70186 5.72702 5.79533 5.81418 5.84569 5.87065 6.02238 6.12660 6.26157 6.32192 6.41316 6.50716 6.66263 6.67753 6.79406 6.97139 7.22704 7.45398 7.59219 7.77733 7.89207 8.14978 8.40044 9.17481 9.79880 10.40504 11.26108 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.010197 B = 0.004625 C = 0.003446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2745.278047 B = 6052.425268 C = 8122.550164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.006 3.994 3 Si 0.898 3.102 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.279 1.279 7 C -0.248 4.248 8 H 0.066 0.934 9 N -0.587 5.587 10 C 0.141 3.859 11 C -0.127 4.127 12 C -0.087 4.087 13 H 0.094 0.906 14 C 0.108 3.892 15 N -0.596 5.596 16 C 0.615 3.385 17 O -0.528 6.528 18 C -0.071 4.071 19 C -0.155 4.155 20 C 0.035 3.965 21 C -0.086 4.086 22 C -0.163 4.163 23 C -0.162 4.162 24 N -0.337 5.337 25 O 0.134 5.866 26 C 0.105 3.895 27 C -0.110 4.110 28 H 0.065 0.935 29 C 0.175 3.825 30 H 0.254 0.746 31 H 0.023 0.977 32 H 0.053 0.947 33 H 0.049 0.951 34 H 0.059 0.941 35 H 0.078 0.922 36 H 0.068 0.932 37 H 0.180 0.820 38 H 0.125 0.875 39 H 0.100 0.900 40 H 0.105 0.895 41 H 0.104 0.896 42 H 0.098 0.902 43 H 0.067 0.933 44 H 0.092 0.908 45 H 0.092 0.908 46 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.761 -6.641 -13.056 16.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.192 4.192 3 Si 0.727 3.273 4 H -0.212 1.212 5 H -0.218 1.218 6 H -0.204 1.204 7 C -0.378 4.378 8 H 0.083 0.917 9 N -0.310 5.310 10 C 0.014 3.986 11 C -0.166 4.166 12 C -0.106 4.106 13 H 0.112 0.888 14 C -0.014 4.014 15 N -0.327 5.327 16 C 0.401 3.599 17 O -0.406 6.406 18 C -0.137 4.137 19 C -0.178 4.178 20 C -0.122 4.122 21 C -0.105 4.105 22 C -0.201 4.201 23 C -0.200 4.200 24 N -0.035 5.035 25 O 0.058 5.942 26 C -0.016 4.016 27 C -0.131 4.131 28 H 0.084 0.916 29 C 0.048 3.952 30 H 0.064 0.936 31 H 0.041 0.959 32 H 0.072 0.928 33 H 0.068 0.932 34 H 0.078 0.922 35 H 0.097 0.903 36 H 0.086 0.914 37 H 0.198 0.802 38 H 0.143 0.857 39 H 0.119 0.881 40 H 0.123 0.877 41 H 0.122 0.878 42 H 0.117 0.883 43 H 0.085 0.915 44 H 0.110 0.890 45 H 0.110 0.890 46 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 6.617 -5.756 -13.028 15.705 hybrid contribution 0.637 0.318 -0.329 0.784 sum 7.254 -5.438 -13.357 16.143 Atomic orbital electron populations 1.70004 1.05195 1.25551 1.53859 1.25007 0.95251 0.98282 1.00695 0.86342 0.79214 0.83886 0.77810 1.21222 1.21751 1.20438 1.19123 0.92432 0.84372 1.41837 0.91660 1.44116 1.35247 1.01597 1.50012 1.20953 0.97674 0.87184 0.92758 1.21978 0.96924 0.99264 0.98427 1.22331 0.98163 0.96587 0.93508 0.88798 1.22690 0.97241 0.87712 0.93720 1.48577 1.34958 1.10557 1.38633 1.16078 0.79389 0.85128 0.79323 1.90832 1.59787 1.28506 1.61514 1.24170 1.00605 0.87306 1.01659 1.22681 0.99274 0.96433 0.99398 1.22634 0.98846 0.91258 0.99473 1.20088 0.87781 1.02573 1.00025 1.23051 0.99870 0.97825 0.99312 1.23045 0.96495 1.00700 0.99791 1.73773 1.07631 1.15371 1.06702 1.85170 1.47925 1.11757 1.49310 1.22268 0.96938 0.86114 0.96325 1.22106 0.96624 0.96516 0.97810 0.91645 1.20158 0.89142 0.97976 0.87898 0.93583 0.95905 0.92810 0.93236 0.92175 0.90343 0.91392 0.80245 0.85736 0.88122 0.87702 0.87782 0.88322 0.91494 0.88959 0.88953 0.95688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.12 11.17 55.49 0.62 -24.50 16 2 C 0.01 0.17 4.95 -17.43 -0.09 0.09 16 3 Si 0.90 21.51 29.59 -169.99 -5.03 16.48 16 4 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.25 -6.53 9.70 -15.06 -0.15 -6.68 16 8 H 0.07 1.73 7.88 -52.49 -0.41 1.31 16 9 N -0.59 -13.73 2.86 -173.64 -0.50 -14.23 16 10 C 0.14 2.77 6.57 -3.64 -0.02 2.74 16 11 C -0.13 -2.09 4.99 -26.81 -0.13 -2.22 16 12 C -0.09 -1.29 3.67 -88.47 -0.32 -1.62 16 13 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 14 C 0.11 1.52 6.21 -1.86 -0.01 1.50 16 15 N -0.60 -9.45 2.89 -171.20 -0.50 -9.95 16 16 C 0.62 10.14 7.85 -12.48 -0.10 10.05 16 17 O -0.53 -9.52 17.17 5.30 0.09 -9.42 16 18 C -0.07 -1.11 7.09 -36.32 -0.26 -1.37 16 19 C -0.16 -2.09 10.26 -38.95 -0.40 -2.49 16 20 C 0.04 0.48 6.94 -82.16 -0.57 -0.09 16 21 C -0.09 -0.88 6.33 -91.77 -0.58 -1.47 16 22 C -0.16 -1.26 10.04 -26.73 -0.27 -1.52 16 23 C -0.16 -1.44 10.23 -26.74 -0.27 -1.71 16 24 N -0.34 -5.57 12.04 33.52 0.40 -5.17 16 25 O 0.13 2.26 9.05 15.55 0.14 2.40 16 26 C 0.11 1.78 4.62 -3.34 -0.02 1.77 16 27 C -0.11 -1.86 2.70 -90.91 -0.25 -2.10 16 28 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 29 C 0.17 3.80 4.63 -4.94 -0.02 3.77 16 30 H 0.25 6.91 8.31 -40.82 -0.34 6.57 16 31 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.05 1.07 7.96 -51.93 -0.41 0.65 16 33 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 34 H 0.06 1.10 7.20 -51.93 -0.37 0.73 16 35 H 0.08 1.09 7.89 -51.93 -0.41 0.68 16 36 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.18 1.98 7.61 -52.48 -0.40 1.58 16 38 H 0.12 1.16 8.14 -51.93 -0.42 0.74 16 39 H 0.10 0.75 7.33 -51.93 -0.38 0.37 16 40 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 41 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 43 H 0.07 1.08 7.83 -51.93 -0.41 0.67 16 44 H 0.09 1.84 7.52 -51.93 -0.39 1.45 16 45 H 0.09 2.28 6.03 -51.93 -0.31 1.97 16 46 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 LS Contribution 369.86 15.07 5.57 5.57 Total: -1.00 -29.93 369.86 -9.51 -39.45 By element: Atomic # 1 Polarization: 7.59 SS G_CDS: -6.86 Total: 0.72 kcal Atomic # 6 Polarization: 2.11 SS G_CDS: -3.46 Total: -1.35 kcal Atomic # 7 Polarization: -53.88 SS G_CDS: 0.03 Total: -53.85 kcal Atomic # 8 Polarization: -7.26 SS G_CDS: 0.23 Total: -7.03 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.03 Total: 16.48 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -29.93 -9.51 -39.45 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088123725.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.725 kcal (2) G-P(sol) polarization free energy of solvation -29.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.447 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds