Wall clock time and date at job start Tue Mar 31 2020 16:14:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.37620 * 119.96246 * 2 1 4 4 C 1.39781 * 119.92885 * 180.29842 * 3 2 1 5 5 C 1.47522 * 120.07335 * 179.70248 * 4 3 2 6 6 O 1.21597 * 119.99485 * 351.99987 * 5 4 3 7 7 N 1.34779 * 120.00100 * 171.99266 * 5 4 3 8 8 C 1.47014 * 125.64930 * 4.93879 * 7 5 4 9 9 C 1.54319 * 107.27703 * 180.96509 * 8 7 5 10 10 C 1.55160 * 102.86040 * 22.52665 * 9 8 7 11 11 C 1.47423 * 125.64513 * 185.23940 * 7 5 4 12 12 C 1.39815 * 119.86304 * 359.72126 * 4 3 2 13 13 C 1.37595 * 119.92714 * 0.02562 * 12 4 3 14 14 C 1.39199 * 119.96292 * 179.74827 * 2 1 3 15 15 N 1.39043 * 119.93274 * 359.97438 * 14 2 1 16 16 C 1.46505 * 119.99748 * 179.72697 * 15 14 2 17 17 C 1.50695 * 109.46804 * 179.97438 * 16 15 14 18 18 O 1.21293 * 120.00624 * 359.97438 * 17 16 15 19 19 N 1.34783 * 120.00024 * 179.97438 * 17 16 15 20 20 C 1.37096 * 120.00382 * 179.97438 * 19 17 16 21 21 H 1.07997 * 119.99544 * 0.02562 * 20 19 17 22 22 C 1.38946 * 120.00383 * 180.02562 * 20 19 17 23 23 N 1.31418 * 119.99417 * 0.02562 * 22 20 19 24 24 Si 1.86793 * 120.00094 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47326 * 359.97438 * 24 22 20 26 26 H 1.48498 * 109.47300 * 120.00335 * 24 22 20 27 27 H 1.48508 * 109.46832 * 239.99599 * 24 22 20 28 28 H 1.09004 * 109.46897 * 270.24937 * 1 2 3 29 29 H 1.08993 * 109.47326 * 30.25225 * 1 2 3 30 30 H 1.08996 * 109.47438 * 150.25757 * 1 2 3 31 31 H 1.08002 * 120.04170 * 0.04182 * 3 2 1 32 32 H 1.08996 * 109.88413 * 300.50975 * 8 7 5 33 33 H 1.08999 * 109.88402 * 61.67783 * 8 7 5 34 34 H 1.08994 * 110.92140 * 264.11245 * 9 8 7 35 35 H 1.09000 * 110.58861 * 140.78527 * 9 8 7 36 36 H 1.09003 * 110.99990 * 206.23256 * 10 9 8 37 37 H 1.08995 * 111.00545 * 82.37882 * 10 9 8 38 38 H 1.08994 * 110.37090 * 274.67806 * 11 7 5 39 39 H 1.09000 * 110.36647 * 36.89428 * 11 7 5 40 40 H 1.07995 * 120.03933 * 180.02562 * 12 4 3 41 41 H 1.08002 * 119.96682 * 179.97438 * 13 12 4 42 42 H 0.96996 * 120.00130 * 359.72241 * 15 14 2 43 43 H 1.09006 * 109.47150 * 59.99693 * 16 15 14 44 44 H 1.09003 * 109.46760 * 299.99710 * 16 15 14 45 45 H 0.97001 * 119.99430 * 0.02562 * 19 17 16 46 46 H 0.97002 * 119.99272 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1944 1.1923 0.0000 4 6 3.5921 1.1915 -0.0063 5 6 4.3321 2.4677 -0.0130 6 8 3.7342 3.5163 -0.1595 7 7 5.6708 2.4713 0.1436 8 6 6.5269 1.2791 0.2272 9 6 7.9764 1.7689 0.4284 10 6 7.7817 3.1895 1.0213 11 6 6.5182 3.6714 0.2655 12 6 4.2876 -0.0214 -0.0067 13 6 3.5946 -1.2101 -0.0014 14 6 2.2023 -1.2059 0.0053 15 7 1.5048 -2.4088 0.0111 16 6 2.2351 -3.6789 0.0107 17 6 1.2537 -4.8225 0.0183 18 8 0.0616 -4.5988 0.0240 19 7 1.7007 -6.0940 0.0187 20 6 0.8080 -7.1345 0.0261 21 1 -0.2535 -6.9352 0.0312 22 6 1.2687 -8.4453 0.0271 23 7 2.5603 -8.6877 0.0213 24 14 0.0523 -9.8629 0.0365 25 1 -1.3325 -9.3268 0.0426 26 1 0.2553 -10.6974 -1.1749 27 1 0.2672 -10.6915 1.2500 28 1 -0.3633 0.0045 1.0277 29 1 -0.3633 0.8876 -0.5177 30 1 -0.3634 -0.8922 -0.5098 31 1 1.6544 2.1276 0.0007 32 1 6.2216 0.6620 1.0722 33 1 6.4563 0.7064 -0.6975 34 1 8.5064 1.8173 -0.5227 35 1 8.5040 1.1260 1.1329 36 1 8.6374 3.8267 0.7979 37 1 7.6008 3.1433 2.0952 38 1 6.7870 4.0479 -0.7214 39 1 6.0031 4.4430 0.8378 40 1 5.3676 -0.0254 -0.0112 41 1 4.1312 -2.1474 -0.0021 42 1 0.5349 -2.4070 0.0156 43 1 2.8657 -3.7357 0.8980 44 1 2.8576 -3.7397 -0.8821 45 1 2.6540 -6.2730 0.0144 46 1 2.8819 -9.6029 0.0224 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000176918426.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:14:05 Heat of formation + Delta-G solvation = -26.113406 kcal Electronic energy + Delta-G solvation = -27323.409848 eV Core-core repulsion = 23406.279804 eV Total energy + Delta-G solvation = -3917.130045 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.64063 -39.34120 -38.29512 -37.43665 -35.18831 -34.06304 -33.08037 -31.70844 -31.45880 -29.97573 -29.48758 -27.41508 -26.47609 -24.84531 -24.25911 -22.08961 -21.55322 -21.40694 -19.82472 -19.43799 -18.18563 -17.59083 -16.98933 -16.74284 -15.86034 -15.78917 -15.49971 -14.98323 -14.62549 -14.58824 -14.23957 -14.04926 -13.90166 -13.76898 -13.61232 -13.52073 -13.22508 -13.02627 -12.61742 -12.57298 -12.42366 -12.30847 -11.78091 -11.76145 -11.68104 -11.57708 -11.39675 -11.20857 -11.15538 -10.54142 -10.46545 -10.38357 -10.01739 -9.90390 -9.71303 -8.91222 -8.72049 -8.71344 -8.18126 -7.27263 -6.59213 -4.01040 1.15202 1.48941 2.81375 2.93464 3.04983 3.17968 3.24255 3.51211 3.64646 3.96179 4.06401 4.11513 4.17409 4.51967 4.69369 4.74548 4.84779 4.87082 4.93434 5.00171 5.08806 5.17026 5.27764 5.34391 5.40409 5.45083 5.48001 5.52316 5.55501 5.64462 5.70610 5.72954 5.75502 5.77564 5.93195 6.02166 6.05451 6.20050 6.33549 6.37993 6.54793 6.85705 7.34614 7.38485 7.39651 7.83840 7.92681 8.14468 8.37115 8.97669 9.30647 9.78592 10.57722 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.019417 B = 0.002167 C = 0.001959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1441.674982 B =12918.172903 C =14287.584601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.179 4.179 3 C -0.007 4.007 4 C -0.211 4.211 5 C 0.584 3.416 6 O -0.550 6.550 7 N -0.621 5.621 8 C 0.090 3.910 9 C -0.136 4.136 10 C -0.134 4.134 11 C 0.106 3.894 12 C -0.073 4.073 13 C -0.214 4.214 14 C 0.257 3.743 15 N -0.712 5.712 16 C 0.107 3.893 17 C 0.427 3.573 18 O -0.595 6.595 19 N -0.549 5.549 20 C -0.305 4.305 21 H 0.106 0.894 22 C 0.026 3.974 23 N -0.895 5.895 24 Si 0.933 3.067 25 H -0.267 1.267 26 H -0.280 1.280 27 H -0.280 1.280 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.064 0.936 31 H 0.130 0.870 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.078 0.922 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.076 0.924 38 H 0.066 0.934 39 H 0.077 0.923 40 H 0.154 0.846 41 H 0.128 0.872 42 H 0.414 0.586 43 H 0.079 0.921 44 H 0.079 0.921 45 H 0.395 0.605 46 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.383 18.534 1.158 22.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.184 4.184 3 C -0.026 4.026 4 C -0.217 4.217 5 C 0.377 3.623 6 O -0.429 6.429 7 N -0.355 5.355 8 C -0.033 4.033 9 C -0.174 4.174 10 C -0.172 4.172 11 C -0.016 4.016 12 C -0.092 4.092 13 C -0.237 4.237 14 C 0.148 3.852 15 N -0.340 5.340 16 C -0.021 4.021 17 C 0.213 3.787 18 O -0.481 6.481 19 N -0.184 5.184 20 C -0.434 4.434 21 H 0.124 0.876 22 C -0.177 4.177 23 N -0.535 5.535 24 Si 0.759 3.241 25 H -0.191 1.191 26 H -0.206 1.206 27 H -0.206 1.206 28 H 0.085 0.915 29 H 0.086 0.914 30 H 0.083 0.917 31 H 0.148 0.852 32 H 0.099 0.901 33 H 0.098 0.902 34 H 0.097 0.903 35 H 0.103 0.897 36 H 0.102 0.898 37 H 0.095 0.905 38 H 0.085 0.915 39 H 0.095 0.905 40 H 0.170 0.830 41 H 0.146 0.854 42 H 0.254 0.746 43 H 0.097 0.903 44 H 0.097 0.903 45 H 0.229 0.771 46 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 11.356 18.801 1.067 21.991 hybrid contribution -0.161 -1.095 -0.015 1.107 sum 11.195 17.707 1.052 20.975 Atomic orbital electron populations 1.20606 0.90885 1.02655 1.02206 1.19275 0.96130 0.91206 1.11752 1.20756 0.92273 0.97197 0.92419 1.19310 0.93865 0.92029 1.16489 1.17991 0.79693 0.89218 0.75378 1.90745 1.67499 1.33813 1.50888 1.48316 1.05851 1.07671 1.73689 1.22555 0.90082 0.88690 1.01926 1.22740 0.95597 0.96964 1.02132 1.22800 0.97446 0.96592 1.00409 1.22193 0.90579 0.88545 1.00291 1.22314 1.01651 0.91182 0.94036 1.20633 0.91905 0.98766 1.12349 1.17961 0.91525 0.85706 0.90039 1.44675 1.09904 1.01729 1.77722 1.21045 0.94874 0.83880 1.02287 1.19696 0.89172 0.84087 0.85767 1.90513 1.16538 1.83940 1.57093 1.41800 1.09943 1.03960 1.62690 1.19779 0.91440 0.84035 1.48136 0.87631 1.25326 0.96748 0.98915 0.96717 1.69616 1.12610 1.21884 1.49406 0.85752 0.80275 0.80182 0.77878 1.19111 1.20557 1.20561 0.91511 0.91448 0.91693 0.85249 0.90067 0.90230 0.90332 0.89713 0.89772 0.90491 0.91548 0.90455 0.82967 0.85416 0.74564 0.90256 0.90271 0.77121 0.91607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.31 9.56 36.01 0.34 -0.96 16 2 C -0.18 -2.48 5.89 -104.49 -0.62 -3.09 16 3 C -0.01 -0.09 9.23 -39.23 -0.36 -0.45 16 4 C -0.21 -2.84 5.87 -104.95 -0.62 -3.46 16 5 C 0.58 8.14 7.80 -12.47 -0.10 8.05 16 6 O -0.55 -9.40 16.66 5.28 0.09 -9.31 16 7 N -0.62 -6.51 3.33 -175.96 -0.59 -7.09 16 8 C 0.09 0.65 4.86 -3.07 -0.01 0.63 16 9 C -0.14 -0.67 6.95 -24.90 -0.17 -0.84 16 10 C -0.13 -0.72 7.08 -24.58 -0.17 -0.89 16 11 C 0.11 0.89 6.89 -2.53 -0.02 0.87 16 12 C -0.07 -0.85 8.57 -39.23 -0.34 -1.19 16 13 C -0.21 -2.71 9.28 -39.44 -0.37 -3.08 16 14 C 0.26 3.72 6.63 -83.86 -0.56 3.16 16 15 N -0.71 -11.32 5.58 -59.81 -0.33 -11.66 16 16 C 0.11 1.76 5.38 -5.19 -0.03 1.73 16 17 C 0.43 9.40 7.85 -10.99 -0.09 9.32 16 18 O -0.59 -15.08 15.24 5.55 0.08 -15.00 16 19 N -0.55 -13.05 5.29 -10.97 -0.06 -13.10 16 20 C -0.30 -8.08 9.68 -14.94 -0.14 -8.22 16 21 H 0.11 2.95 7.16 -52.49 -0.38 2.58 16 22 C 0.03 0.66 5.50 -17.47 -0.10 0.56 16 23 N -0.89 -23.14 13.05 55.50 0.72 -22.42 16 24 Si 0.93 20.14 29.55 -169.99 -5.02 15.11 16 25 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 26 H -0.28 -5.96 7.11 56.52 0.40 -5.55 16 27 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 28 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 29 H 0.07 0.72 8.08 -51.93 -0.42 0.30 16 30 H 0.06 0.84 6.54 -51.93 -0.34 0.50 16 31 H 0.13 1.75 7.66 -52.49 -0.40 1.35 16 32 H 0.08 0.56 6.69 -51.93 -0.35 0.21 16 33 H 0.08 0.53 6.77 -51.93 -0.35 0.18 16 34 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 36 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 37 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.08 0.72 8.09 -51.93 -0.42 0.30 16 40 H 0.15 1.32 2.76 -57.93 -0.16 1.16 16 41 H 0.13 1.43 6.70 -52.49 -0.35 1.08 16 42 H 0.41 7.06 5.40 -40.82 -0.22 6.84 16 43 H 0.08 1.16 7.93 -51.93 -0.41 0.74 16 44 H 0.08 1.16 7.93 -51.93 -0.41 0.75 16 45 H 0.40 8.86 7.90 -40.82 -0.32 8.54 16 46 H 0.27 6.68 8.31 -40.82 -0.34 6.34 16 LS Contribution 373.82 15.07 5.63 5.63 Total: -1.00 -32.16 373.82 -9.02 -41.18 By element: Atomic # 1 Polarization: 20.74 SS G_CDS: -6.21 Total: 14.54 kcal Atomic # 6 Polarization: 5.46 SS G_CDS: -3.34 Total: 2.12 kcal Atomic # 7 Polarization: -54.02 SS G_CDS: -0.25 Total: -54.28 kcal Atomic # 8 Polarization: -24.48 SS G_CDS: 0.17 Total: -24.31 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -5.02 Total: 15.11 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -32.16 -9.02 -41.18 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176918426.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.065 kcal (2) G-P(sol) polarization free energy of solvation -32.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds