Wall clock time and date at job start Tue Mar 31 2020 16:14:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.37620 * 119.96246 * 2 1 4 4 C 1.39781 * 119.92885 * 180.29842 * 3 2 1 5 5 C 1.47522 * 120.07335 * 179.70248 * 4 3 2 6 6 O 1.21597 * 119.99485 * 351.99987 * 5 4 3 7 7 N 1.34779 * 120.00100 * 171.99266 * 5 4 3 8 8 C 1.47014 * 125.64930 * 4.93879 * 7 5 4 9 9 C 1.54319 * 107.27703 * 180.96509 * 8 7 5 10 10 C 1.55160 * 102.86040 * 22.52665 * 9 8 7 11 11 C 1.47423 * 125.64513 * 185.23940 * 7 5 4 12 12 C 1.39815 * 119.86304 * 359.72126 * 4 3 2 13 13 C 1.37595 * 119.92714 * 0.02562 * 12 4 3 14 14 C 1.39199 * 119.96292 * 179.74827 * 2 1 3 15 15 N 1.39043 * 119.93274 * 359.97438 * 14 2 1 16 16 C 1.46505 * 119.99748 * 179.72697 * 15 14 2 17 17 C 1.50695 * 109.46804 * 179.97438 * 16 15 14 18 18 O 1.21293 * 120.00624 * 359.97438 * 17 16 15 19 19 N 1.34783 * 120.00024 * 179.97438 * 17 16 15 20 20 C 1.37096 * 120.00382 * 179.97438 * 19 17 16 21 21 H 1.07997 * 119.99544 * 0.02562 * 20 19 17 22 22 C 1.38946 * 120.00383 * 180.02562 * 20 19 17 23 23 N 1.31418 * 119.99417 * 0.02562 * 22 20 19 24 24 Si 1.86793 * 120.00094 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47326 * 359.97438 * 24 22 20 26 26 H 1.48498 * 109.47300 * 120.00335 * 24 22 20 27 27 H 1.48508 * 109.46832 * 239.99599 * 24 22 20 28 28 H 1.09004 * 109.46897 * 270.24937 * 1 2 3 29 29 H 1.08993 * 109.47326 * 30.25225 * 1 2 3 30 30 H 1.08996 * 109.47438 * 150.25757 * 1 2 3 31 31 H 1.08002 * 120.04170 * 0.04182 * 3 2 1 32 32 H 1.08996 * 109.88413 * 300.50975 * 8 7 5 33 33 H 1.08999 * 109.88402 * 61.67783 * 8 7 5 34 34 H 1.08994 * 110.92140 * 264.11245 * 9 8 7 35 35 H 1.09000 * 110.58861 * 140.78527 * 9 8 7 36 36 H 1.09003 * 110.99990 * 206.23256 * 10 9 8 37 37 H 1.08995 * 111.00545 * 82.37882 * 10 9 8 38 38 H 1.08994 * 110.37090 * 274.67806 * 11 7 5 39 39 H 1.09000 * 110.36647 * 36.89428 * 11 7 5 40 40 H 1.07995 * 120.03933 * 180.02562 * 12 4 3 41 41 H 1.08002 * 119.96682 * 179.97438 * 13 12 4 42 42 H 0.96996 * 120.00130 * 359.72241 * 15 14 2 43 43 H 1.09006 * 109.47150 * 59.99693 * 16 15 14 44 44 H 1.09003 * 109.46760 * 299.99710 * 16 15 14 45 45 H 0.97001 * 119.99430 * 0.02562 * 19 17 16 46 46 H 0.97002 * 119.99272 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1944 1.1923 0.0000 4 6 3.5921 1.1915 -0.0063 5 6 4.3321 2.4677 -0.0130 6 8 3.7342 3.5163 -0.1595 7 7 5.6708 2.4713 0.1436 8 6 6.5269 1.2791 0.2272 9 6 7.9764 1.7689 0.4284 10 6 7.7817 3.1895 1.0213 11 6 6.5182 3.6714 0.2655 12 6 4.2876 -0.0214 -0.0067 13 6 3.5946 -1.2101 -0.0014 14 6 2.2023 -1.2059 0.0053 15 7 1.5048 -2.4088 0.0111 16 6 2.2351 -3.6789 0.0107 17 6 1.2537 -4.8225 0.0183 18 8 0.0616 -4.5988 0.0240 19 7 1.7007 -6.0940 0.0187 20 6 0.8080 -7.1345 0.0261 21 1 -0.2535 -6.9352 0.0312 22 6 1.2687 -8.4453 0.0271 23 7 2.5603 -8.6877 0.0213 24 14 0.0523 -9.8629 0.0365 25 1 -1.3325 -9.3268 0.0426 26 1 0.2553 -10.6974 -1.1749 27 1 0.2672 -10.6915 1.2500 28 1 -0.3633 0.0045 1.0277 29 1 -0.3633 0.8876 -0.5177 30 1 -0.3634 -0.8922 -0.5098 31 1 1.6544 2.1276 0.0007 32 1 6.2216 0.6620 1.0722 33 1 6.4563 0.7064 -0.6975 34 1 8.5064 1.8173 -0.5227 35 1 8.5040 1.1260 1.1329 36 1 8.6374 3.8267 0.7979 37 1 7.6008 3.1433 2.0952 38 1 6.7870 4.0479 -0.7214 39 1 6.0031 4.4430 0.8378 40 1 5.3676 -0.0254 -0.0112 41 1 4.1312 -2.1474 -0.0021 42 1 0.5349 -2.4070 0.0156 43 1 2.8657 -3.7357 0.8980 44 1 2.8576 -3.7397 -0.8821 45 1 2.6540 -6.2730 0.0144 46 1 2.8819 -9.6029 0.0224 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000176918426.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:14:04 Heat of formation + Delta-G solvation = -47.152935 kcal Electronic energy + Delta-G solvation = -27324.322191 eV Core-core repulsion = 23406.279804 eV Total energy + Delta-G solvation = -3918.042387 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.58328 -40.58837 -39.76113 -38.33211 -36.52483 -35.82607 -34.08169 -33.35986 -32.48485 -31.02347 -30.20374 -28.73992 -27.51824 -26.42609 -25.22726 -23.11768 -22.48814 -22.05477 -21.13997 -20.64447 -20.02339 -18.87003 -17.91926 -17.51365 -17.14746 -17.06980 -16.73876 -16.40073 -16.31612 -15.75749 -15.48244 -15.10085 -14.89672 -14.84712 -14.58950 -14.42678 -14.02987 -14.00817 -13.93785 -13.78017 -13.56360 -13.45572 -13.17067 -12.98842 -12.80252 -12.71678 -12.45718 -12.19901 -12.13161 -12.09474 -11.59655 -11.57698 -11.36311 -11.13669 -10.95545 -10.55316 -10.09626 -9.82905 -9.63911 -8.52473 -8.39287 -6.01593 0.09694 0.47303 1.33956 1.42313 1.55231 1.87666 1.92362 2.01111 2.17287 2.38364 2.93913 3.14459 3.15273 3.50614 3.64190 3.84660 3.90247 3.98168 4.10475 4.17104 4.29038 4.31331 4.36829 4.40711 4.47889 4.52521 4.59836 4.62167 4.69092 4.75180 4.84655 4.95972 4.98091 5.01832 5.15305 5.19996 5.25189 5.33618 5.35529 5.37776 5.41649 5.54655 5.79247 5.91283 6.26672 6.47452 6.49988 6.65140 7.04500 7.14123 7.44695 7.97095 8.64413 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.019417 B = 0.002167 C = 0.001959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1441.674982 B =12918.172903 C =14287.584601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.185 4.185 3 C -0.019 4.019 4 C -0.219 4.219 5 C 0.575 3.425 6 O -0.596 6.596 7 N -0.618 5.618 8 C 0.076 3.924 9 C -0.127 4.127 10 C -0.125 4.125 11 C 0.096 3.904 12 C -0.063 4.063 13 C -0.212 4.212 14 C 0.241 3.759 15 N -0.722 5.722 16 C 0.122 3.878 17 C 0.428 3.572 18 O -0.632 6.632 19 N -0.558 5.558 20 C -0.337 4.337 21 H 0.080 0.920 22 C -0.008 4.008 23 N -0.913 5.913 24 Si 0.992 3.008 25 H -0.274 1.274 26 H -0.270 1.270 27 H -0.270 1.270 28 H 0.070 0.930 29 H 0.078 0.922 30 H 0.056 0.944 31 H 0.124 0.876 32 H 0.089 0.911 33 H 0.091 0.909 34 H 0.089 0.911 35 H 0.105 0.895 36 H 0.105 0.895 37 H 0.076 0.924 38 H 0.070 0.930 39 H 0.060 0.940 40 H 0.186 0.814 41 H 0.149 0.851 42 H 0.406 0.594 43 H 0.105 0.895 44 H 0.104 0.896 45 H 0.401 0.599 46 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.104 18.046 1.327 23.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.190 4.190 3 C -0.039 4.039 4 C -0.225 4.225 5 C 0.368 3.632 6 O -0.479 6.479 7 N -0.351 5.351 8 C -0.045 4.045 9 C -0.165 4.165 10 C -0.163 4.163 11 C -0.026 4.026 12 C -0.081 4.081 13 C -0.235 4.235 14 C 0.133 3.867 15 N -0.351 5.351 16 C -0.005 4.005 17 C 0.215 3.785 18 O -0.520 6.520 19 N -0.194 5.194 20 C -0.466 4.466 21 H 0.098 0.902 22 C -0.209 4.209 23 N -0.553 5.553 24 Si 0.816 3.184 25 H -0.199 1.199 26 H -0.196 1.196 27 H -0.195 1.195 28 H 0.089 0.911 29 H 0.097 0.903 30 H 0.075 0.925 31 H 0.142 0.858 32 H 0.107 0.893 33 H 0.109 0.891 34 H 0.108 0.892 35 H 0.123 0.877 36 H 0.123 0.877 37 H 0.095 0.905 38 H 0.088 0.912 39 H 0.079 0.921 40 H 0.202 0.798 41 H 0.167 0.833 42 H 0.245 0.755 43 H 0.123 0.877 44 H 0.122 0.878 45 H 0.236 0.764 46 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 14.163 18.318 1.243 23.188 hybrid contribution -0.948 -0.807 -0.066 1.247 sum 13.215 17.512 1.177 21.970 Atomic orbital electron populations 1.20610 0.90334 1.02758 1.02514 1.19410 0.96768 0.91170 1.11617 1.20807 0.92901 0.97029 0.93197 1.19500 0.93850 0.92788 1.16317 1.18142 0.80913 0.88740 0.75427 1.90712 1.68777 1.35092 1.53280 1.48432 1.05194 1.09787 1.71669 1.22845 0.91114 0.87803 1.02756 1.22757 0.93942 0.96536 1.03263 1.22791 0.96269 0.97291 0.99937 1.22408 0.91534 0.87802 1.00854 1.22668 1.03186 0.89871 0.92389 1.20929 0.91184 1.00016 1.11369 1.18151 0.92364 0.85102 0.91048 1.44629 1.09491 1.01949 1.79035 1.20968 0.93352 0.81645 1.04582 1.20665 0.89657 0.84829 0.83308 1.90491 1.18790 1.84698 1.58016 1.41819 1.09853 1.04216 1.63541 1.19696 0.90958 0.85616 1.50339 0.90155 1.26033 0.98433 1.00519 0.95888 1.69660 1.13532 1.22726 1.49349 0.84880 0.77800 0.77340 0.78394 1.19886 1.19565 1.19549 0.91122 0.90304 0.92536 0.85811 0.89285 0.89144 0.89191 0.87699 0.87654 0.90485 0.91181 0.92146 0.79785 0.83325 0.75536 0.87738 0.87825 0.76424 0.91042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.63 9.56 71.24 0.68 -1.95 16 2 C -0.18 -5.11 5.89 -19.78 -0.12 -5.22 16 3 C -0.02 -0.55 9.23 22.50 0.21 -0.34 16 4 C -0.22 -5.74 5.87 -20.07 -0.12 -5.86 16 5 C 0.57 15.95 7.80 86.69 0.68 16.63 16 6 O -0.60 -21.06 16.66 -4.02 -0.07 -21.12 16 7 N -0.62 -12.12 3.33 -828.88 -2.76 -14.88 16 8 C 0.08 0.85 4.86 86.73 0.42 1.27 16 9 C -0.13 -0.75 6.95 31.78 0.22 -0.52 16 10 C -0.12 -0.97 7.08 31.99 0.23 -0.75 16 11 C 0.10 1.50 6.89 86.86 0.60 2.10 16 12 C -0.06 -1.31 8.57 22.50 0.19 -1.12 16 13 C -0.21 -4.84 9.28 22.36 0.21 -4.63 16 14 C 0.24 6.68 6.63 38.47 0.26 6.93 16 15 N -0.72 -22.36 5.58 -343.13 -1.91 -24.27 16 16 C 0.12 3.78 5.38 85.63 0.46 4.24 16 17 C 0.43 18.80 7.85 87.65 0.69 19.49 16 18 O -0.63 -32.70 15.24 -3.07 -0.05 -32.75 16 19 N -0.56 -26.59 5.29 -306.99 -1.62 -28.21 16 20 C -0.34 -18.13 9.68 84.04 0.81 -17.31 16 21 H 0.08 4.65 7.16 -2.91 -0.02 4.63 16 22 C -0.01 -0.39 5.50 84.92 0.47 0.07 16 23 N -0.91 -46.50 13.05 21.66 0.28 -46.22 16 24 Si 0.99 41.01 29.55 68.60 2.03 43.04 16 25 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 26 H -0.27 -10.72 7.11 99.48 0.71 -10.02 16 27 H -0.27 -10.71 7.11 99.48 0.71 -10.00 16 28 H 0.07 1.68 8.14 -2.38 -0.02 1.66 16 29 H 0.08 1.73 8.08 -2.39 -0.02 1.71 16 30 H 0.06 1.50 6.54 -2.39 -0.02 1.48 16 31 H 0.12 3.52 7.66 -2.91 -0.02 3.50 16 32 H 0.09 0.90 6.69 -2.39 -0.02 0.89 16 33 H 0.09 0.86 6.77 -2.39 -0.02 0.85 16 34 H 0.09 0.38 8.14 -2.39 -0.02 0.36 16 35 H 0.10 0.28 8.14 -2.39 -0.02 0.26 16 36 H 0.11 0.43 8.14 -2.39 -0.02 0.41 16 37 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 38 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 39 H 0.06 1.14 8.09 -2.39 -0.02 1.12 16 40 H 0.19 2.53 2.76 -8.03 -0.02 2.51 16 41 H 0.15 2.74 6.70 -2.91 -0.02 2.72 16 42 H 0.41 13.98 5.40 -92.71 -0.50 13.48 16 43 H 0.10 2.74 7.93 -2.38 -0.02 2.72 16 44 H 0.10 2.74 7.93 -2.39 -0.02 2.72 16 45 H 0.40 17.79 7.90 -92.71 -0.73 17.05 16 46 H 0.28 13.32 8.31 -92.71 -0.77 12.55 16 Total: -1.00 -71.59 373.82 1.57 -70.02 By element: Atomic # 1 Polarization: 41.58 SS G_CDS: -0.21 Total: 41.38 kcal Atomic # 6 Polarization: 7.14 SS G_CDS: 5.88 Total: 13.03 kcal Atomic # 7 Polarization: -107.57 SS G_CDS: -6.01 Total: -113.59 kcal Atomic # 8 Polarization: -53.76 SS G_CDS: -0.11 Total: -53.87 kcal Atomic # 14 Polarization: 41.01 SS G_CDS: 2.03 Total: 43.04 kcal Total: -71.59 1.57 -70.02 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176918426.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.867 kcal (2) G-P(sol) polarization free energy of solvation -71.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds