Wall clock time and date at job start Tue Mar 31 2020 16:03:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38258 * 120.00257 * 2 1 4 4 C 1.38213 * 119.99488 * 180.27681 * 3 2 1 5 5 C 1.38256 * 120.00091 * 359.74623 * 4 3 2 6 6 C 1.38206 * 120.00247 * 359.97438 * 5 4 3 7 7 C 1.38220 * 119.99535 * 179.74791 * 2 1 3 8 8 C 1.50697 * 119.99706 * 359.97438 * 7 2 1 9 9 C 1.50699 * 109.47532 * 84.73082 * 8 7 2 10 10 O 1.21279 * 119.99956 * 359.97438 * 9 8 7 11 11 N 1.34778 * 120.00118 * 179.97438 * 9 8 7 12 12 N 1.40094 * 119.99655 * 179.97438 * 11 9 8 13 13 C 1.34778 * 119.99655 * 179.97438 * 12 11 9 14 14 O 1.21276 * 120.00372 * 359.97438 * 13 12 11 15 15 C 1.50697 * 120.00183 * 179.97438 * 13 12 11 16 16 N 1.46497 * 109.47719 * 179.97438 * 15 13 12 17 17 C 1.36934 * 120.00423 * 270.00525 * 16 15 13 18 18 H 1.07998 * 120.00355 * 192.62738 * 17 16 15 19 19 C 1.38812 * 119.99646 * 12.62185 * 17 16 15 20 20 N 1.31619 * 120.00346 * 25.31663 * 19 17 16 21 21 Si 1.86804 * 119.99832 * 205.31142 * 19 17 16 22 22 H 1.48500 * 109.47138 * 0.02562 * 21 19 17 23 23 H 1.48502 * 109.47003 * 120.00599 * 21 19 17 24 24 H 1.48495 * 109.46984 * 240.00199 * 21 19 17 25 25 C 1.46505 * 119.99840 * 89.99860 * 16 15 13 26 26 C 1.52995 * 117.49963 * 194.12372 * 25 16 15 27 27 C 1.52995 * 117.49777 * 125.46291 * 25 16 15 28 28 H 1.08998 * 109.46939 * 270.25462 * 1 2 3 29 29 H 1.09007 * 109.46661 * 30.24935 * 1 2 3 30 30 H 1.08994 * 109.47417 * 150.25232 * 1 2 3 31 31 H 1.07994 * 120.00121 * 0.04255 * 3 2 1 32 32 H 1.07998 * 119.99763 * 179.76758 * 4 3 2 33 33 H 1.08006 * 119.99822 * 179.97438 * 5 4 3 34 34 H 1.07997 * 119.99994 * 180.02562 * 6 5 4 35 35 H 1.08994 * 109.47478 * 324.72174 * 8 7 2 36 36 H 1.09009 * 109.46601 * 204.72662 * 8 7 2 37 37 H 0.96996 * 119.99810 * 0.27084 * 11 9 8 38 38 H 0.97000 * 120.00572 * 359.97438 * 12 11 9 39 39 H 1.09002 * 109.47353 * 300.00280 * 15 13 12 40 40 H 1.09004 * 109.47072 * 59.99733 * 15 13 12 41 41 H 0.97001 * 120.00244 * 175.06253 * 20 19 17 42 42 H 1.09007 * 115.54734 * 339.79073 * 25 16 15 43 43 H 1.09009 * 117.49893 * 359.97438 * 26 25 16 44 44 H 1.08999 * 117.50032 * 145.01934 * 26 25 16 45 45 H 1.09004 * 117.49474 * 214.97607 * 27 25 16 46 46 H 1.09001 * 117.50332 * 359.97265 * 27 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1984 1.1973 0.0000 4 6 3.5805 1.1971 -0.0058 5 6 4.2717 -0.0003 -0.0063 6 6 3.5806 -1.1971 -0.0004 7 6 2.1981 -1.1971 0.0053 8 6 1.4444 -2.5020 0.0116 9 6 1.0796 -2.8784 -1.4013 10 8 1.3996 -2.1577 -2.3227 11 7 0.3977 -4.0160 -1.6410 12 7 0.0581 -4.3655 -2.9545 13 6 -0.6234 -5.5033 -3.1942 14 8 -0.9422 -6.2248 -2.2730 15 6 -0.9892 -5.8791 -4.6070 16 7 -1.7200 -7.1487 -4.6011 17 6 -1.0384 -8.3317 -4.7063 18 1 -1.5742 -9.2477 -4.9067 19 6 0.3413 -8.3534 -4.5556 20 7 0.9411 -7.4187 -3.8493 21 14 1.3469 -9.7095 -5.3552 22 1 0.4417 -10.6299 -6.0891 23 1 2.3191 -9.1105 -6.3047 24 1 2.0795 -10.4656 -4.3080 25 6 -3.1803 -7.1528 -4.4824 26 6 -3.8584 -8.4836 -4.1508 27 6 -3.9745 -7.8950 -5.5590 28 1 -0.3633 0.0046 1.0276 29 1 -0.3633 0.8878 -0.5177 30 1 -0.3634 -0.8922 -0.5099 31 1 1.6585 2.1326 0.0007 32 1 4.1206 2.1324 -0.0096 33 1 5.3517 -0.0004 -0.0112 34 1 4.1205 -2.1324 -0.0004 35 1 0.5365 -2.3944 0.6049 36 1 2.0713 -3.2815 0.4449 37 1 0.1383 -4.5904 -0.9037 38 1 0.3134 -3.7887 -3.6914 39 1 -1.6171 -5.1000 -5.0392 40 1 -0.0816 -5.9855 -5.2012 41 1 1.8953 -7.4729 -3.6839 42 1 -3.6207 -6.2462 -4.0671 43 1 -3.2181 -9.3562 -4.0213 44 1 -4.7452 -8.4526 -3.5177 45 1 -4.9376 -7.4769 -5.8518 46 1 -3.4106 -8.3799 -6.3559 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000298251611.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:03:22 Heat of formation + Delta-G solvation = 24.221749 kcal Electronic energy + Delta-G solvation = -28024.674012 eV Core-core repulsion = 24109.726663 eV Total energy + Delta-G solvation = -3914.947349 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.33709 -40.31150 -39.47334 -38.38264 -35.98753 -35.18748 -34.31426 -33.20989 -32.62444 -31.88619 -29.09189 -28.11650 -27.33303 -25.62617 -23.20997 -22.97304 -22.41567 -22.12416 -21.65574 -21.02700 -18.86284 -18.36371 -18.06852 -17.51668 -17.17803 -16.96210 -16.69353 -16.13779 -15.93625 -15.83334 -15.66450 -15.22952 -14.98269 -14.71699 -14.33297 -14.14580 -14.02144 -13.82161 -13.63190 -13.26472 -13.16518 -12.97068 -12.84194 -12.72049 -12.46341 -12.29304 -12.14666 -12.01598 -11.85644 -11.81304 -11.77350 -11.70787 -11.19385 -10.99847 -10.52208 -10.39307 -9.68546 -9.45515 -9.02641 -8.73239 -7.92530 -5.18502 0.39324 0.52792 1.22945 1.43995 1.48362 1.53499 1.57129 2.38009 2.52786 2.83811 3.12897 3.30294 3.44882 3.53752 3.65628 3.91149 3.99314 4.10602 4.19398 4.27741 4.34499 4.43067 4.45810 4.48239 4.50316 4.54987 4.71888 4.81328 4.84881 4.85590 4.93367 4.95891 4.98501 5.15856 5.18382 5.31872 5.32339 5.52353 5.59295 5.63988 5.70158 5.74119 5.98975 6.04519 6.17152 6.24105 6.87524 7.09238 7.18839 7.77225 7.96178 8.20328 9.13809 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.017643 B = 0.002679 C = 0.002419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1586.618588 B =10450.411542 C =11572.638458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.083 4.083 3 C -0.133 4.133 4 C -0.122 4.122 5 C -0.137 4.137 6 C -0.120 4.120 7 C -0.083 4.083 8 C -0.088 4.088 9 C 0.511 3.489 10 O -0.577 6.577 11 N -0.517 5.517 12 N -0.541 5.541 13 C 0.535 3.465 14 O -0.567 6.567 15 C 0.174 3.826 16 N -0.550 5.550 17 C -0.255 4.255 18 H 0.076 0.924 19 C -0.045 4.045 20 N -0.912 5.912 21 Si 0.962 3.038 22 H -0.272 1.272 23 H -0.289 1.289 24 H -0.303 1.303 25 C 0.102 3.898 26 C -0.204 4.204 27 C -0.192 4.192 28 H 0.090 0.910 29 H 0.073 0.927 30 H 0.052 0.948 31 H 0.139 0.861 32 H 0.143 0.857 33 H 0.138 0.862 34 H 0.125 0.875 35 H 0.129 0.871 36 H 0.123 0.877 37 H 0.428 0.572 38 H 0.421 0.579 39 H 0.085 0.915 40 H 0.083 0.917 41 H 0.246 0.754 42 H 0.106 0.894 43 H 0.070 0.930 44 H 0.101 0.899 45 H 0.112 0.888 46 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.145 16.059 7.870 17.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.083 4.083 3 C -0.150 4.150 4 C -0.140 4.140 5 C -0.155 4.155 6 C -0.138 4.138 7 C -0.084 4.084 8 C -0.128 4.128 9 C 0.298 3.702 10 O -0.455 6.455 11 N -0.262 5.262 12 N -0.291 5.291 13 C 0.322 3.678 14 O -0.441 6.441 15 C 0.042 3.958 16 N -0.266 5.266 17 C -0.384 4.384 18 H 0.094 0.906 19 C -0.241 4.241 20 N -0.558 5.558 21 Si 0.792 3.208 22 H -0.197 1.197 23 H -0.215 1.215 24 H -0.231 1.231 25 C -0.006 4.006 26 C -0.242 4.242 27 C -0.232 4.232 28 H 0.109 0.891 29 H 0.092 0.908 30 H 0.071 0.929 31 H 0.157 0.843 32 H 0.161 0.839 33 H 0.156 0.844 34 H 0.143 0.857 35 H 0.147 0.853 36 H 0.141 0.859 37 H 0.269 0.731 38 H 0.262 0.738 39 H 0.103 0.897 40 H 0.101 0.899 41 H 0.055 0.945 42 H 0.124 0.876 43 H 0.089 0.911 44 H 0.119 0.881 45 H 0.130 0.870 46 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 0.006 16.023 7.826 17.833 hybrid contribution 1.111 -1.216 -0.162 1.655 sum 1.117 14.808 7.664 16.711 Atomic orbital electron populations 1.20851 0.90457 1.02770 1.03131 1.20013 0.96873 0.92849 0.98545 1.21290 0.94781 0.97814 1.01156 1.21453 0.94464 0.98830 0.99265 1.21369 1.00867 0.92386 1.00907 1.21248 0.93677 0.99169 0.99735 1.19274 0.93786 0.93433 1.01903 1.20643 1.03644 0.96903 0.91654 1.21282 0.76995 0.79125 0.92788 1.90692 1.55602 1.52197 1.47051 1.45026 1.56883 1.24028 1.00262 1.45540 1.60050 1.25631 0.97927 1.22616 0.74721 0.76534 0.93942 1.90496 1.56570 1.50193 1.46875 1.20574 0.97419 0.87328 0.90445 1.43724 1.00187 1.01994 1.80663 1.19364 0.89328 0.88297 1.41437 0.90584 1.25373 0.98103 1.00574 1.00001 1.69913 1.09322 1.37090 1.39426 0.85278 0.78627 0.79003 0.77880 1.19658 1.21539 1.23075 1.21256 0.82714 0.95164 1.01458 1.23145 1.02650 0.98748 0.99699 1.23380 1.02164 1.05806 0.91898 0.89134 0.90815 0.92902 0.84271 0.83883 0.84395 0.85661 0.85260 0.85911 0.73082 0.73833 0.89672 0.89877 0.94461 0.87612 0.91128 0.88080 0.87002 0.90568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.13 9.22 71.24 0.66 -1.47 16 2 C -0.08 -1.83 5.88 -19.86 -0.12 -1.95 16 3 C -0.13 -2.60 9.70 22.27 0.22 -2.39 16 4 C -0.12 -2.28 10.05 22.27 0.22 -2.05 16 5 C -0.14 -2.77 10.05 22.27 0.22 -2.54 16 6 C -0.12 -2.76 9.68 22.27 0.22 -2.54 16 7 C -0.08 -1.97 4.37 -19.87 -0.09 -2.05 16 8 C -0.09 -1.89 5.15 29.10 0.15 -1.74 16 9 C 0.51 15.53 7.14 87.66 0.63 16.16 16 10 O -0.58 -21.45 15.87 -3.03 -0.05 -21.49 16 11 N -0.52 -17.33 6.26 -173.53 -1.09 -18.42 16 12 N -0.54 -20.77 6.26 -173.54 -1.09 -21.86 16 13 C 0.53 24.04 5.91 87.66 0.52 24.56 16 14 O -0.57 -29.82 15.69 -3.02 -0.05 -29.87 16 15 C 0.17 7.62 5.48 85.63 0.47 8.09 16 16 N -0.55 -26.06 2.38 -682.35 -1.62 -27.69 16 17 C -0.25 -13.42 8.89 84.03 0.75 -12.67 16 18 H 0.08 4.03 6.28 -2.91 -0.02 4.01 16 19 C -0.04 -2.40 4.83 84.86 0.41 -1.99 16 20 N -0.91 -50.54 8.85 21.65 0.19 -50.35 16 21 Si 0.96 44.55 29.63 68.60 2.03 46.58 16 22 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 23 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 24 H -0.30 -14.43 7.11 99.48 0.71 -13.72 16 25 C 0.10 4.09 6.60 44.99 0.30 4.38 16 26 C -0.20 -7.65 9.77 30.62 0.30 -7.35 16 27 C -0.19 -6.53 10.14 30.62 0.31 -6.22 16 28 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 29 H 0.07 1.23 8.09 -2.38 -0.02 1.22 16 30 H 0.05 1.12 6.15 -2.39 -0.01 1.11 16 31 H 0.14 2.06 8.06 -2.91 -0.02 2.04 16 32 H 0.14 1.86 8.06 -2.91 -0.02 1.84 16 33 H 0.14 2.14 8.06 -2.91 -0.02 2.11 16 34 H 0.13 2.61 8.06 -2.91 -0.02 2.58 16 35 H 0.13 2.12 7.01 -2.39 -0.02 2.10 16 36 H 0.12 2.19 8.05 -2.38 -0.02 2.17 16 37 H 0.43 13.84 8.00 -213.33 -1.71 12.14 16 38 H 0.42 15.31 8.00 -213.32 -1.71 13.60 16 39 H 0.09 3.03 8.07 -2.39 -0.02 3.01 16 40 H 0.08 3.94 6.61 -2.39 -0.02 3.93 16 41 H 0.25 13.69 8.32 -92.71 -0.77 12.92 16 42 H 0.11 3.85 8.14 -2.38 -0.02 3.83 16 43 H 0.07 3.03 6.44 -2.38 -0.02 3.02 16 44 H 0.10 3.24 8.14 -2.39 -0.02 3.22 16 45 H 0.11 3.02 8.14 -2.38 -0.02 3.00 16 46 H 0.08 2.82 8.14 -2.39 -0.02 2.80 16 Total: -1.00 -71.81 383.07 1.10 -70.72 By element: Atomic # 1 Polarization: 46.55 SS G_CDS: -2.39 Total: 44.16 kcal Atomic # 6 Polarization: 3.06 SS G_CDS: 5.16 Total: 8.22 kcal Atomic # 7 Polarization: -114.71 SS G_CDS: -3.60 Total: -118.32 kcal Atomic # 8 Polarization: -51.27 SS G_CDS: -0.10 Total: -51.36 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal Total: -71.81 1.10 -70.72 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298251611.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.937 kcal (2) G-P(sol) polarization free energy of solvation -71.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.716 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds