Wall clock time and date at job start Tue Mar 31 2020 16:23:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50701 * 119.99250 * 2 1 4 4 N 1.46504 * 109.47115 * 125.00237 * 3 2 1 5 5 C 1.46508 * 119.99879 * 269.99626 * 4 3 2 6 6 C 1.50692 * 109.46974 * 269.99816 * 5 4 3 7 7 H 1.08000 * 120.00277 * 359.97438 * 6 5 4 8 8 C 1.37877 * 119.99978 * 179.97438 * 6 5 4 9 9 N 1.31519 * 119.99953 * 0.02562 * 8 6 5 10 10 Si 1.86801 * 120.00178 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.46896 * 90.00005 * 10 8 6 12 12 H 1.48497 * 109.46928 * 209.99907 * 10 8 6 13 13 H 1.48499 * 109.47206 * 330.00154 * 10 8 6 14 14 C 1.34774 * 120.00281 * 89.99488 * 4 3 2 15 15 O 1.21283 * 120.00116 * 180.02562 * 14 4 3 16 16 C 1.50701 * 119.99816 * 0.02562 * 14 4 3 17 17 N 1.46501 * 109.47064 * 180.02562 * 16 14 4 18 18 C 1.34774 * 120.00006 * 180.02562 * 17 16 14 19 19 O 1.21587 * 120.00254 * 359.97438 * 18 17 16 20 20 N 1.34780 * 119.99990 * 179.97438 * 18 17 16 21 21 C 1.39950 * 120.00225 * 185.31581 * 20 18 17 22 22 C 1.38881 * 120.07186 * 213.50214 * 21 20 18 23 23 C 1.38094 * 119.92920 * 180.29781 * 22 21 20 24 24 C 1.38298 * 120.06934 * 359.45036 * 23 22 21 25 25 C 1.38267 * 120.13995 * 0.29743 * 24 23 22 26 26 C 1.50701 * 119.96417 * 180.02562 * 25 24 23 27 27 C 1.38133 * 120.06964 * 359.97438 * 25 24 23 28 28 H 1.08008 * 119.99346 * 180.02562 * 1 2 3 29 29 H 1.07991 * 120.00182 * 359.97438 * 1 2 3 30 30 H 1.07993 * 120.00439 * 179.97438 * 2 1 3 31 31 H 1.08993 * 109.47649 * 5.00189 * 3 2 1 32 32 H 1.09000 * 109.46945 * 244.99425 * 3 2 1 33 33 H 1.09004 * 109.46693 * 30.00203 * 5 4 3 34 34 H 1.09000 * 109.46699 * 149.99690 * 5 4 3 35 35 H 0.96998 * 120.00304 * 179.97438 * 9 8 6 36 36 H 1.08999 * 109.47082 * 60.00047 * 16 14 4 37 37 H 1.09000 * 109.47359 * 299.99473 * 16 14 4 38 38 H 0.97005 * 119.99823 * 359.97438 * 17 16 14 39 39 H 0.97001 * 119.99875 * 5.31412 * 20 18 17 40 40 H 1.08002 * 120.03475 * 0.02562 * 22 21 20 41 41 H 1.07999 * 119.96031 * 179.72238 * 23 22 21 42 42 H 1.08000 * 119.93187 * 180.27573 * 24 23 22 43 43 H 1.08992 * 109.47331 * 90.00013 * 26 25 24 44 44 H 1.08993 * 109.46905 * 210.00185 * 26 25 24 45 45 H 1.09006 * 109.46541 * 329.99753 * 26 25 24 46 46 H 1.07994 * 120.03640 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9937 1.3321 1.1314 5 6 2.5587 1.8652 2.4249 6 6 2.8440 3.3438 2.4804 7 1 3.3038 3.8371 1.6368 8 6 2.5182 4.0669 3.6082 9 7 1.9588 3.4661 4.6357 10 14 2.8725 5.8997 3.6773 11 1 1.7002 6.6503 3.1598 12 1 3.1357 6.3003 5.0828 13 1 4.0631 6.2055 2.8441 14 6 4.2496 0.8665 0.9824 15 8 5.0196 0.8883 1.9192 16 6 4.6972 0.3186 -0.3482 17 7 6.0915 -0.1206 -0.2515 18 6 6.7079 -0.6485 -1.3275 19 8 6.1068 -0.7606 -2.3784 20 7 7.9908 -1.0521 -1.2386 21 6 8.6654 -1.4963 -2.3815 22 6 9.6201 -2.4999 -2.2800 23 6 10.2884 -2.9317 -3.4087 24 6 9.9998 -2.3739 -4.6408 25 6 9.0461 -1.3782 -4.7459 26 6 8.7344 -0.7735 -6.0906 27 6 8.3782 -0.9380 -3.6199 28 1 -0.5399 -0.9354 0.0004 29 1 -0.5400 0.9352 0.0004 30 1 1.8501 -0.9352 0.0004 31 1 1.3585 2.1317 0.0896 32 1 2.6212 1.4027 -0.9313 33 1 1.4886 1.6967 2.5459 34 1 3.0989 1.3605 3.2260 35 1 1.7298 3.9747 5.4293 36 1 4.6125 1.0956 -1.1080 37 1 4.0682 -0.5282 -0.6227 38 1 6.5712 -0.0308 0.5869 39 1 8.4465 -1.0346 -0.3825 40 1 9.8427 -2.9390 -1.3188 41 1 11.0341 -3.7089 -3.3297 42 1 10.5206 -2.7164 -5.5227 43 1 7.9333 -1.3391 -6.5664 44 1 8.4199 0.2617 -5.9593 45 1 9.6247 -0.8059 -6.7187 46 1 7.6337 -0.1600 -3.7025 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359406469.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:23:36 Heat of formation + Delta-G solvation = -14.041881 kcal Electronic energy + Delta-G solvation = -27314.288769 eV Core-core repulsion = 23397.682185 eV Total energy + Delta-G solvation = -3916.606584 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.81119 -39.47657 -38.68308 -35.91406 -35.14559 -34.42422 -33.22890 -32.57903 -32.16376 -30.07294 -28.49518 -27.15318 -26.66299 -25.42070 -23.30772 -22.51496 -21.59325 -20.82356 -20.03745 -19.17657 -18.24660 -17.42986 -16.64838 -16.42963 -16.07011 -15.97063 -15.76074 -15.22832 -14.86449 -14.74365 -14.47744 -14.35627 -13.93406 -13.87438 -13.64000 -13.28944 -13.18719 -12.68548 -12.49786 -12.45506 -12.30294 -12.01874 -11.74422 -11.73824 -11.37440 -11.34775 -11.11038 -10.94512 -10.66688 -10.48558 -10.26749 -10.20124 -9.72665 -9.26058 -9.20887 -9.14770 -8.85801 -8.49507 -8.20199 -7.85178 -6.10631 -4.15820 1.14579 1.26449 2.35888 2.46947 2.98450 3.16688 3.26320 3.33332 3.37678 3.67762 3.77684 4.12386 4.39293 4.65884 4.71259 4.84463 4.99148 5.10756 5.17026 5.18097 5.24150 5.33854 5.39860 5.41930 5.44517 5.48438 5.55897 5.63424 5.72107 5.89538 5.98005 6.12918 6.14758 6.19419 6.28309 6.34343 6.51022 6.76328 6.77097 6.85693 6.92708 6.98275 7.33569 7.41155 7.80901 7.84773 8.14763 8.20523 8.40206 8.73152 8.91206 9.49362 10.97512 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.015374 B = 0.002346 C = 0.002213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1820.764793 B =11933.308245 C =12648.899802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.171 4.171 3 C 0.132 3.868 4 N -0.585 5.585 5 C 0.247 3.753 6 C -0.529 4.529 7 H 0.058 0.942 8 C 0.062 3.938 9 N -0.893 5.893 10 Si 0.899 3.101 11 H -0.280 1.280 12 H -0.285 1.285 13 H -0.274 1.274 14 C 0.501 3.499 15 O -0.539 6.539 16 C 0.117 3.883 17 N -0.724 5.724 18 C 0.706 3.294 19 O -0.576 6.576 20 N -0.688 5.688 21 C 0.176 3.824 22 C -0.157 4.157 23 C -0.097 4.097 24 C -0.143 4.143 25 C -0.068 4.068 26 C -0.113 4.113 27 C -0.122 4.122 28 H 0.095 0.905 29 H 0.100 0.900 30 H 0.105 0.895 31 H 0.091 0.909 32 H 0.077 0.923 33 H 0.035 0.965 34 H 0.044 0.956 35 H 0.264 0.736 36 H 0.094 0.906 37 H 0.093 0.907 38 H 0.410 0.590 39 H 0.409 0.591 40 H 0.124 0.876 41 H 0.124 0.876 42 H 0.120 0.880 43 H 0.071 0.929 44 H 0.067 0.933 45 H 0.065 0.935 46 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.961 -11.477 -16.925 23.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.190 4.190 3 C 0.008 3.992 4 N -0.316 5.316 5 C 0.129 3.871 6 C -0.567 4.567 7 H 0.076 0.924 8 C -0.140 4.140 9 N -0.532 5.532 10 Si 0.726 3.274 11 H -0.206 1.206 12 H -0.211 1.211 13 H -0.199 1.199 14 C 0.286 3.714 15 O -0.417 6.417 16 C -0.011 4.011 17 N -0.382 5.382 18 C 0.407 3.593 19 O -0.454 6.454 20 N -0.335 5.335 21 C 0.081 3.919 22 C -0.178 4.178 23 C -0.116 4.116 24 C -0.162 4.162 25 C -0.069 4.069 26 C -0.170 4.170 27 C -0.142 4.142 28 H 0.113 0.887 29 H 0.118 0.882 30 H 0.123 0.877 31 H 0.110 0.890 32 H 0.096 0.904 33 H 0.053 0.947 34 H 0.062 0.938 35 H 0.074 0.926 36 H 0.112 0.888 37 H 0.111 0.889 38 H 0.248 0.752 39 H 0.244 0.756 40 H 0.142 0.858 41 H 0.142 0.858 42 H 0.138 0.862 43 H 0.090 0.910 44 H 0.086 0.914 45 H 0.084 0.916 46 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 10.647 -11.440 -17.093 23.160 hybrid contribution 0.423 0.988 1.077 1.522 sum 11.070 -10.452 -16.015 22.097 Atomic orbital electron populations 1.23831 0.95812 1.01853 1.00164 1.23385 0.96474 0.98867 1.00252 1.20683 0.93292 0.95717 0.89517 1.48185 1.10011 1.59351 1.14003 1.19340 0.95611 0.93851 0.78342 1.21404 1.40799 0.93179 1.01363 0.92383 1.24934 0.94991 0.98825 0.95300 1.69931 1.41869 1.36217 1.05189 0.86489 0.78645 0.84874 0.77370 1.20592 1.21075 1.19884 1.20172 0.83020 0.79064 0.89130 1.90662 1.52534 1.56932 1.41613 1.21091 0.81900 1.00901 0.97175 1.44808 1.13832 1.65770 1.13772 1.15777 0.80896 0.78418 0.84242 1.90938 1.65005 1.61167 1.28250 1.42608 1.11787 1.68230 1.10876 1.17490 0.93815 0.94147 0.86474 1.20847 0.99964 0.97332 0.99635 1.20867 0.99174 0.99463 0.92061 1.20974 0.99390 0.98226 0.97627 1.19805 0.95511 0.96238 0.95326 1.20785 1.01954 1.00912 0.93361 1.21097 1.00844 1.01382 0.90890 0.88695 0.88202 0.87705 0.89018 0.90446 0.94655 0.93754 0.92648 0.88792 0.88903 0.75232 0.75550 0.85812 0.85803 0.86196 0.91006 0.91447 0.91589 0.84527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.26 14.32 29.01 0.42 -1.85 16 2 C -0.17 -2.36 9.74 -36.03 -0.35 -2.71 16 3 C 0.13 2.05 5.65 -5.19 -0.03 2.02 16 4 N -0.59 -11.69 2.44 -176.43 -0.43 -12.12 16 5 C 0.25 6.21 5.16 -5.19 -0.03 6.19 16 6 C -0.53 -14.49 9.39 -34.44 -0.32 -14.82 16 7 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 8 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 9 N -0.89 -25.98 13.29 55.43 0.74 -25.24 16 10 Si 0.90 21.42 29.54 -169.99 -5.02 16.40 16 11 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 12 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 13 H -0.27 -6.52 7.11 56.52 0.40 -6.11 16 14 C 0.50 9.67 7.74 -10.99 -0.09 9.58 16 15 O -0.54 -12.32 15.25 5.55 0.08 -12.24 16 16 C 0.12 1.76 4.71 -5.19 -0.02 1.74 16 17 N -0.72 -10.20 5.53 -66.41 -0.37 -10.56 16 18 C 0.71 9.99 8.30 -86.92 -0.72 9.27 16 19 O -0.58 -9.72 14.03 5.29 0.07 -9.64 16 20 N -0.69 -7.77 5.35 -14.22 -0.08 -7.85 16 21 C 0.18 2.06 6.28 -83.69 -0.53 1.54 16 22 C -0.16 -1.51 9.96 -39.40 -0.39 -1.90 16 23 C -0.10 -0.84 10.04 -39.61 -0.40 -1.24 16 24 C -0.14 -1.29 9.70 -39.55 -0.38 -1.68 16 25 C -0.07 -0.71 5.88 -104.65 -0.62 -1.32 16 26 C -0.11 -0.92 10.01 36.01 0.36 -0.56 16 27 C -0.12 -1.51 8.31 -39.39 -0.33 -1.84 16 28 H 0.09 1.04 8.06 -52.48 -0.42 0.62 16 29 H 0.10 1.23 7.84 -52.49 -0.41 0.82 16 30 H 0.10 1.38 7.83 -52.49 -0.41 0.97 16 31 H 0.09 1.47 7.72 -51.93 -0.40 1.07 16 32 H 0.08 1.01 6.44 -51.93 -0.33 0.68 16 33 H 0.04 0.91 8.07 -51.93 -0.42 0.49 16 34 H 0.04 1.26 7.42 -51.93 -0.39 0.87 16 35 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 36 H 0.09 1.34 7.40 -51.93 -0.38 0.96 16 37 H 0.09 1.29 7.78 -51.93 -0.40 0.89 16 38 H 0.41 5.60 7.46 -40.82 -0.30 5.30 16 39 H 0.41 3.45 8.84 -40.82 -0.36 3.09 16 40 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 41 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16 42 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 43 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 44 H 0.07 0.54 8.08 -51.93 -0.42 0.12 16 45 H 0.07 0.42 8.09 -51.93 -0.42 0.00 16 46 H 0.14 1.91 6.41 -52.49 -0.34 1.58 16 LS Contribution 393.25 15.07 5.93 5.93 Total: -1.00 -33.69 393.25 -9.25 -42.94 By element: Atomic # 1 Polarization: 15.00 SS G_CDS: -6.65 Total: 8.35 kcal Atomic # 6 Polarization: 7.57 SS G_CDS: -3.52 Total: 4.04 kcal Atomic # 7 Polarization: -55.64 SS G_CDS: -0.14 Total: -55.77 kcal Atomic # 8 Polarization: -22.04 SS G_CDS: 0.16 Total: -21.88 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -33.69 -9.25 -42.94 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359406469.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.896 kcal (2) G-P(sol) polarization free energy of solvation -33.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds