Wall clock time and date at job start Tue Mar 31 2020 16:23:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50701 * 119.99250 * 2 1 4 4 N 1.46504 * 109.47115 * 125.00237 * 3 2 1 5 5 C 1.46508 * 119.99879 * 269.99626 * 4 3 2 6 6 C 1.50692 * 109.46974 * 269.99816 * 5 4 3 7 7 H 1.08000 * 120.00277 * 359.97438 * 6 5 4 8 8 C 1.37877 * 119.99978 * 179.97438 * 6 5 4 9 9 N 1.31519 * 119.99953 * 0.02562 * 8 6 5 10 10 Si 1.86801 * 120.00178 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.46896 * 90.00005 * 10 8 6 12 12 H 1.48497 * 109.46928 * 209.99907 * 10 8 6 13 13 H 1.48499 * 109.47206 * 330.00154 * 10 8 6 14 14 C 1.34774 * 120.00281 * 89.99488 * 4 3 2 15 15 O 1.21283 * 120.00116 * 180.02562 * 14 4 3 16 16 C 1.50701 * 119.99816 * 0.02562 * 14 4 3 17 17 N 1.46501 * 109.47064 * 180.02562 * 16 14 4 18 18 C 1.34774 * 120.00006 * 180.02562 * 17 16 14 19 19 O 1.21587 * 120.00254 * 359.97438 * 18 17 16 20 20 N 1.34780 * 119.99990 * 179.97438 * 18 17 16 21 21 C 1.39950 * 120.00225 * 185.31581 * 20 18 17 22 22 C 1.38881 * 120.07186 * 213.50214 * 21 20 18 23 23 C 1.38094 * 119.92920 * 180.29781 * 22 21 20 24 24 C 1.38298 * 120.06934 * 359.45036 * 23 22 21 25 25 C 1.38267 * 120.13995 * 0.29743 * 24 23 22 26 26 C 1.50701 * 119.96417 * 180.02562 * 25 24 23 27 27 C 1.38133 * 120.06964 * 359.97438 * 25 24 23 28 28 H 1.08008 * 119.99346 * 180.02562 * 1 2 3 29 29 H 1.07991 * 120.00182 * 359.97438 * 1 2 3 30 30 H 1.07993 * 120.00439 * 179.97438 * 2 1 3 31 31 H 1.08993 * 109.47649 * 5.00189 * 3 2 1 32 32 H 1.09000 * 109.46945 * 244.99425 * 3 2 1 33 33 H 1.09004 * 109.46693 * 30.00203 * 5 4 3 34 34 H 1.09000 * 109.46699 * 149.99690 * 5 4 3 35 35 H 0.96998 * 120.00304 * 179.97438 * 9 8 6 36 36 H 1.08999 * 109.47082 * 60.00047 * 16 14 4 37 37 H 1.09000 * 109.47359 * 299.99473 * 16 14 4 38 38 H 0.97005 * 119.99823 * 359.97438 * 17 16 14 39 39 H 0.97001 * 119.99875 * 5.31412 * 20 18 17 40 40 H 1.08002 * 120.03475 * 0.02562 * 22 21 20 41 41 H 1.07999 * 119.96031 * 179.72238 * 23 22 21 42 42 H 1.08000 * 119.93187 * 180.27573 * 24 23 22 43 43 H 1.08992 * 109.47331 * 90.00013 * 26 25 24 44 44 H 1.08993 * 109.46905 * 210.00185 * 26 25 24 45 45 H 1.09006 * 109.46541 * 329.99753 * 26 25 24 46 46 H 1.07994 * 120.03640 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9937 1.3321 1.1314 5 6 2.5587 1.8652 2.4249 6 6 2.8440 3.3438 2.4804 7 1 3.3038 3.8371 1.6368 8 6 2.5182 4.0669 3.6082 9 7 1.9588 3.4661 4.6357 10 14 2.8725 5.8997 3.6773 11 1 1.7002 6.6503 3.1598 12 1 3.1357 6.3003 5.0828 13 1 4.0631 6.2055 2.8441 14 6 4.2496 0.8665 0.9824 15 8 5.0196 0.8883 1.9192 16 6 4.6972 0.3186 -0.3482 17 7 6.0915 -0.1206 -0.2515 18 6 6.7079 -0.6485 -1.3275 19 8 6.1068 -0.7606 -2.3784 20 7 7.9908 -1.0521 -1.2386 21 6 8.6654 -1.4963 -2.3815 22 6 9.6201 -2.4999 -2.2800 23 6 10.2884 -2.9317 -3.4087 24 6 9.9998 -2.3739 -4.6408 25 6 9.0461 -1.3782 -4.7459 26 6 8.7344 -0.7735 -6.0906 27 6 8.3782 -0.9380 -3.6199 28 1 -0.5399 -0.9354 0.0004 29 1 -0.5400 0.9352 0.0004 30 1 1.8501 -0.9352 0.0004 31 1 1.3585 2.1317 0.0896 32 1 2.6212 1.4027 -0.9313 33 1 1.4886 1.6967 2.5459 34 1 3.0989 1.3605 3.2260 35 1 1.7298 3.9747 5.4293 36 1 4.6125 1.0956 -1.1080 37 1 4.0682 -0.5282 -0.6227 38 1 6.5712 -0.0308 0.5869 39 1 8.4465 -1.0346 -0.3825 40 1 9.8427 -2.9390 -1.3188 41 1 11.0341 -3.7089 -3.3297 42 1 10.5206 -2.7164 -5.5227 43 1 7.9333 -1.3391 -6.5664 44 1 8.4199 0.2617 -5.9593 45 1 9.6247 -0.8059 -6.7187 46 1 7.6337 -0.1600 -3.7025 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359406469.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:23:35 Heat of formation + Delta-G solvation = -35.537864 kcal Electronic energy + Delta-G solvation = -27315.220905 eV Core-core repulsion = 23397.682185 eV Total energy + Delta-G solvation = -3917.538720 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.85674 -40.85735 -39.68414 -37.38941 -36.09932 -35.67986 -35.05471 -33.71774 -33.29587 -31.11339 -30.02682 -28.20904 -27.74747 -26.89513 -24.81749 -23.74822 -22.41284 -21.84534 -21.24203 -20.42637 -19.51787 -18.63592 -18.40092 -17.63384 -17.35625 -17.21042 -16.93371 -16.40476 -16.32349 -15.99981 -15.78638 -15.46015 -15.14067 -14.72850 -14.57900 -14.50563 -14.26425 -13.99597 -13.97085 -13.69480 -13.33258 -13.19686 -13.01904 -13.00158 -12.88232 -12.58720 -12.46949 -12.26105 -12.22087 -12.09112 -11.69091 -11.49162 -11.18637 -10.83534 -10.64609 -10.38039 -10.30264 -9.61929 -9.55899 -9.02579 -8.23314 -6.37472 0.36965 0.49651 1.24514 1.37295 1.39376 1.42461 1.49600 1.62442 1.94266 2.30413 2.43416 2.90275 3.07069 3.08030 3.46334 3.94388 4.04059 4.05675 4.17329 4.23769 4.28378 4.30469 4.44538 4.45179 4.49436 4.64807 4.82820 4.82885 4.86328 4.94402 4.98965 5.04352 5.14644 5.21857 5.24183 5.36561 5.44003 5.47053 5.59532 5.70899 5.73458 5.75328 5.85048 5.92231 6.04081 6.15567 6.57698 6.71913 6.80942 7.17825 7.32179 7.35628 8.84024 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.015374 B = 0.002346 C = 0.002213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1820.764793 B =11933.308245 C =12648.899802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.187 4.187 3 C 0.129 3.871 4 N -0.590 5.590 5 C 0.265 3.735 6 C -0.542 4.542 7 H 0.055 0.945 8 C 0.010 3.990 9 N -0.927 5.927 10 Si 0.966 3.034 11 H -0.265 1.265 12 H -0.282 1.282 13 H -0.273 1.273 14 C 0.498 3.502 15 O -0.582 6.582 16 C 0.133 3.867 17 N -0.724 5.724 18 C 0.707 3.293 19 O -0.605 6.605 20 N -0.676 5.676 21 C 0.151 3.849 22 C -0.157 4.157 23 C -0.095 4.095 24 C -0.143 4.143 25 C -0.080 4.080 26 C -0.113 4.113 27 C -0.148 4.148 28 H 0.116 0.884 29 H 0.101 0.899 30 H 0.113 0.887 31 H 0.084 0.916 32 H 0.105 0.895 33 H 0.024 0.976 34 H 0.002 0.998 35 H 0.267 0.733 36 H 0.107 0.893 37 H 0.110 0.890 38 H 0.412 0.588 39 H 0.422 0.578 40 H 0.145 0.855 41 H 0.155 0.845 42 H 0.147 0.853 43 H 0.074 0.926 44 H 0.060 0.940 45 H 0.086 0.914 46 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.074 -12.138 -18.726 25.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.206 4.206 3 C 0.007 3.993 4 N -0.319 5.319 5 C 0.144 3.856 6 C -0.581 4.581 7 H 0.073 0.927 8 C -0.190 4.190 9 N -0.566 5.566 10 Si 0.790 3.210 11 H -0.190 1.190 12 H -0.207 1.207 13 H -0.197 1.197 14 C 0.286 3.714 15 O -0.462 6.462 16 C 0.005 3.995 17 N -0.382 5.382 18 C 0.408 3.592 19 O -0.484 6.484 20 N -0.324 5.324 21 C 0.057 3.943 22 C -0.178 4.178 23 C -0.114 4.114 24 C -0.162 4.162 25 C -0.081 4.081 26 C -0.169 4.169 27 C -0.168 4.168 28 H 0.134 0.866 29 H 0.119 0.881 30 H 0.131 0.869 31 H 0.102 0.898 32 H 0.123 0.877 33 H 0.042 0.958 34 H 0.021 0.979 35 H 0.076 0.924 36 H 0.124 0.876 37 H 0.128 0.872 38 H 0.250 0.750 39 H 0.260 0.740 40 H 0.163 0.837 41 H 0.173 0.827 42 H 0.164 0.836 43 H 0.092 0.908 44 H 0.079 0.921 45 H 0.105 0.895 46 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 11.769 -12.117 -18.927 25.369 hybrid contribution 0.094 1.119 1.595 1.951 sum 11.863 -10.998 -17.332 23.708 Atomic orbital electron populations 1.24062 0.95510 1.02961 0.97916 1.23308 0.96900 0.98184 1.02229 1.20908 0.92929 0.96646 0.88817 1.48125 1.11216 1.59098 1.13501 1.18763 0.94168 0.92727 0.79963 1.21682 1.40657 0.94334 1.01410 0.92707 1.25817 0.94687 1.03556 0.94899 1.70046 1.42749 1.38050 1.05784 0.85441 0.78826 0.79304 0.77396 1.19009 1.20733 1.19747 1.20837 0.82226 0.78166 0.90219 1.90634 1.53625 1.58538 1.43453 1.20944 0.82688 1.01630 0.94200 1.44751 1.13514 1.65933 1.13959 1.15826 0.81586 0.78255 0.83571 1.90917 1.65941 1.62390 1.29174 1.42456 1.10804 1.67484 1.11669 1.17751 0.94955 0.95436 0.86186 1.21137 0.99037 0.96464 1.01149 1.21296 0.99074 0.99533 0.91456 1.21340 0.98612 0.97265 0.98937 1.20097 0.95688 0.96758 0.95520 1.20820 1.02988 1.00403 0.92713 1.21076 1.01518 1.01927 0.92312 0.86610 0.88091 0.86889 0.89805 0.87695 0.95752 0.97949 0.92404 0.87560 0.87188 0.75003 0.74046 0.83732 0.82722 0.83574 0.90779 0.92083 0.89489 0.87026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.96 14.32 67.78 0.97 -2.99 16 2 C -0.19 -4.98 9.74 25.64 0.25 -4.73 16 3 C 0.13 3.95 5.65 85.63 0.48 4.43 16 4 N -0.59 -23.99 2.44 -830.49 -2.03 -26.02 16 5 C 0.26 13.82 5.16 85.63 0.44 14.26 16 6 C -0.54 -30.38 9.39 25.60 0.24 -30.14 16 7 H 0.05 3.03 7.81 -2.91 -0.02 3.01 16 8 C 0.01 0.54 5.46 84.65 0.46 1.01 16 9 N -0.93 -55.00 13.29 21.45 0.28 -54.71 16 10 Si 0.97 44.13 29.54 68.60 2.03 46.15 16 11 H -0.27 -11.42 7.11 99.48 0.71 -10.72 16 12 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 13 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 14 C 0.50 19.53 7.74 87.66 0.68 20.21 16 15 O -0.58 -27.49 15.25 -3.04 -0.05 -27.54 16 16 C 0.13 3.93 4.71 85.63 0.40 4.33 16 17 N -0.72 -20.30 5.53 -482.29 -2.67 -22.97 16 18 C 0.71 19.97 8.30 179.05 1.49 21.45 16 19 O -0.60 -20.51 14.03 -3.99 -0.06 -20.56 16 20 N -0.68 -15.07 5.35 -317.17 -1.70 -16.77 16 21 C 0.15 3.46 6.28 38.14 0.24 3.70 16 22 C -0.16 -2.71 9.96 22.39 0.22 -2.49 16 23 C -0.10 -1.37 10.04 22.25 0.22 -1.15 16 24 C -0.14 -2.22 9.70 22.29 0.22 -2.01 16 25 C -0.08 -1.59 5.88 -19.88 -0.12 -1.71 16 26 C -0.11 -1.72 10.01 71.24 0.71 -1.01 16 27 C -0.15 -3.71 8.31 22.39 0.19 -3.53 16 28 H 0.12 2.27 8.06 -2.91 -0.02 2.25 16 29 H 0.10 2.37 7.84 -2.91 -0.02 2.34 16 30 H 0.11 2.82 7.83 -2.91 -0.02 2.80 16 31 H 0.08 2.68 7.72 -2.39 -0.02 2.66 16 32 H 0.11 2.60 6.44 -2.39 -0.02 2.58 16 33 H 0.02 1.31 8.07 -2.38 -0.02 1.29 16 34 H 0.00 0.14 7.42 -2.39 -0.02 0.13 16 35 H 0.27 14.89 8.31 -92.71 -0.77 14.12 16 36 H 0.11 2.92 7.40 -2.39 -0.02 2.90 16 37 H 0.11 2.92 7.78 -2.39 -0.02 2.90 16 38 H 0.41 11.38 7.46 -92.70 -0.69 10.68 16 39 H 0.42 6.87 8.84 -92.71 -0.82 6.05 16 40 H 0.14 1.79 8.06 -2.91 -0.02 1.77 16 41 H 0.16 1.25 8.06 -2.91 -0.02 1.23 16 42 H 0.15 1.46 8.06 -2.91 -0.02 1.43 16 43 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 44 H 0.06 0.99 8.08 -2.39 -0.02 0.97 16 45 H 0.09 0.93 8.09 -2.38 -0.02 0.91 16 46 H 0.11 3.30 6.41 -2.91 -0.02 3.28 16 Total: -1.00 -75.06 393.25 2.41 -72.65 By element: Atomic # 1 Polarization: 30.61 SS G_CDS: -0.51 Total: 30.11 kcal Atomic # 6 Polarization: 12.56 SS G_CDS: 7.10 Total: 19.66 kcal Atomic # 7 Polarization: -114.37 SS G_CDS: -6.11 Total: -120.47 kcal Atomic # 8 Polarization: -48.00 SS G_CDS: -0.10 Total: -48.10 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.15 kcal Total: -75.06 2.41 -72.65 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359406469.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.113 kcal (2) G-P(sol) polarization free energy of solvation -75.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds