Wall clock time and date at job start Tue Mar 31 2020 16:19:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38296 * 119.92401 * 2 1 4 4 C 1.38090 * 120.07589 * 180.02562 * 3 2 1 5 5 C 1.38921 * 119.92516 * 0.23038 * 4 3 2 6 6 N 1.39733 * 120.07713 * 179.74570 * 5 4 3 7 7 C 1.34775 * 119.99588 * 33.33604 * 6 5 4 8 8 O 1.21375 * 120.00050 * 5.27526 * 7 6 5 9 9 C 1.49355 * 119.99545 * 185.27499 * 7 6 5 10 10 O 1.21355 * 119.99920 * 0.02562 * 9 7 6 11 11 N 1.34775 * 119.99545 * 179.97438 * 9 7 6 12 12 C 1.46506 * 119.99915 * 179.97438 * 11 9 7 13 13 C 1.52995 * 109.47312 * 179.97438 * 12 11 9 14 14 H 1.09003 * 109.46769 * 65.00032 * 13 12 11 15 15 N 1.46504 * 109.47416 * 305.00319 * 13 12 11 16 16 C 1.36933 * 120.00104 * 154.99678 * 15 13 12 17 17 H 1.08002 * 119.99806 * 0.02562 * 16 15 13 18 18 C 1.38809 * 120.00066 * 179.97438 * 16 15 13 19 19 N 1.31616 * 119.99632 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 120.00177 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.46857 * 59.99915 * 20 18 16 22 22 H 1.48494 * 109.47254 * 180.02562 * 20 18 16 23 23 H 1.48508 * 109.47043 * 300.00353 * 20 18 16 24 24 C 1.52994 * 109.47176 * 184.99733 * 13 12 11 25 25 C 1.52999 * 117.50526 * 248.74978 * 24 13 12 26 26 C 1.53005 * 117.49945 * 180.08937 * 24 13 12 27 27 C 1.38935 * 119.84692 * 359.49477 * 5 4 3 28 28 C 1.38091 * 119.92227 * 0.50486 * 27 5 4 29 29 H 1.09004 * 109.46691 * 89.99938 * 1 2 3 30 30 H 1.08995 * 109.47142 * 209.99578 * 1 2 3 31 31 H 1.09005 * 109.47066 * 330.00388 * 1 2 3 32 32 H 1.08005 * 119.95770 * 359.97438 * 3 2 1 33 33 H 1.08011 * 120.03515 * 179.97438 * 4 3 2 34 34 H 0.96994 * 119.99782 * 213.32697 * 6 5 4 35 35 H 0.97002 * 120.00769 * 359.97438 * 11 9 7 36 36 H 1.08999 * 109.47056 * 300.00142 * 12 11 9 37 37 H 1.09004 * 109.46940 * 59.99593 * 12 11 9 38 38 H 0.96995 * 119.99495 * 334.99762 * 15 13 12 39 39 H 0.97006 * 119.99576 * 180.02562 * 19 18 16 40 40 H 1.09008 * 115.54847 * 34.42431 * 24 13 12 41 41 H 1.08997 * 117.49384 * 0.02562 * 25 24 13 42 42 H 1.08999 * 117.49934 * 145.01977 * 25 24 13 43 43 H 1.09000 * 117.49608 * 214.98649 * 26 24 13 44 44 H 1.08991 * 117.50002 * 0.02562 * 26 24 13 45 45 H 1.08001 * 120.03962 * 180.24814 * 27 5 4 46 46 H 1.07995 * 119.96295 * 179.74560 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1969 1.1986 0.0000 4 6 3.5778 1.2023 -0.0005 5 6 4.2741 0.0001 -0.0059 6 7 5.6714 0.0001 -0.0118 7 6 6.3479 0.9740 0.6287 8 8 5.7476 1.7959 1.2901 9 6 7.8363 1.0419 0.5247 10 8 8.4363 0.2204 -0.1370 11 7 8.5127 2.0161 1.1648 12 6 9.9727 2.0823 1.0633 13 6 10.4870 3.2720 1.8762 14 1 10.2787 3.1070 2.9333 15 7 9.8144 4.4951 1.4312 16 6 9.6963 5.5604 2.2833 17 1 10.0994 5.4992 3.2834 18 6 9.0594 6.7194 1.8614 19 7 8.5687 6.7941 0.6425 20 14 8.8990 8.1730 3.0236 21 1 10.2510 8.6339 3.4293 22 1 8.1836 9.2787 2.3376 23 1 8.1341 7.7615 4.2283 24 6 11.9962 3.4162 1.6704 25 6 12.9046 3.1082 2.8624 26 6 12.7040 4.5556 2.4064 27 6 3.5778 -1.2022 -0.0001 28 6 2.1969 -1.1985 0.0004 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3633 -0.8900 0.5137 31 1 -0.3633 0.8901 0.5138 32 1 1.6550 2.1328 -0.0004 33 1 4.1160 2.1388 -0.0010 34 1 6.1544 -0.7008 -0.4768 35 1 8.0330 2.6734 1.6928 36 1 10.4062 1.1612 1.4527 37 1 10.2591 2.2055 0.0188 38 1 9.4527 4.5501 0.5328 39 1 8.1239 7.6041 0.3475 40 1 12.3624 3.1541 0.6776 41 1 12.4269 2.8025 3.7932 42 1 13.8684 2.6439 2.6540 43 1 13.5360 5.0429 1.8981 44 1 12.0946 5.2022 3.0376 45 1 4.1160 -2.1386 -0.0002 46 1 1.6551 -2.1327 0.0008 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713883773.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:19:12 Heat of formation + Delta-G solvation = -24.735896 kcal Electronic energy + Delta-G solvation = -27453.325873 eV Core-core repulsion = 23536.255562 eV Total energy + Delta-G solvation = -3917.070311 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.16040 -40.59082 -39.45646 -38.93864 -36.67841 -35.96982 -35.17215 -32.76381 -32.55624 -31.93332 -30.00985 -27.95400 -26.14756 -25.12923 -24.08637 -23.47657 -23.00378 -22.17663 -21.53149 -20.99889 -19.97883 -19.13268 -18.57882 -17.65287 -17.25600 -16.88818 -16.61974 -16.37083 -16.12147 -16.04445 -15.55049 -15.50948 -14.99965 -14.89794 -14.79549 -14.58388 -14.49797 -14.33734 -13.72173 -13.30228 -13.05267 -12.97467 -12.95889 -12.91216 -12.68665 -12.45701 -12.39514 -12.26635 -12.05032 -12.04209 -11.73238 -11.36068 -11.00830 -10.99193 -10.80556 -10.70077 -10.26978 -9.92199 -9.07324 -9.01058 -7.89763 -5.17203 -0.10301 0.42071 0.55737 1.20059 1.48360 1.49574 1.54860 2.01560 2.51535 2.58235 2.79166 3.08163 3.29884 3.48572 3.73866 3.89703 3.97781 3.99564 4.08421 4.17293 4.33000 4.37649 4.39366 4.45365 4.48249 4.52188 4.64292 4.79731 4.82952 4.89499 4.92295 5.04105 5.04700 5.11137 5.17291 5.24082 5.28827 5.34415 5.42088 5.42333 5.48357 5.61415 5.67253 5.85638 6.03650 6.25728 6.29740 6.61733 6.81882 7.38176 8.09067 8.33220 9.32853 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.012308 B = 0.002802 C = 0.002347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2274.414302 B = 9991.756866 C =11926.689722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.101 4.101 3 C -0.114 4.114 4 C -0.140 4.140 5 C 0.114 3.886 6 N -0.632 5.632 7 C 0.506 3.494 8 O -0.522 6.522 9 C 0.510 3.490 10 O -0.540 6.540 11 N -0.679 5.679 12 C 0.123 3.877 13 C 0.193 3.807 14 H 0.058 0.942 15 N -0.725 5.725 16 C -0.219 4.219 17 H 0.077 0.923 18 C -0.072 4.072 19 N -0.966 5.966 20 Si 0.960 3.040 21 H -0.279 1.279 22 H -0.302 1.302 23 H -0.281 1.281 24 C -0.170 4.170 25 C -0.160 4.160 26 C -0.177 4.177 27 C -0.132 4.132 28 C -0.101 4.101 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.067 0.933 32 H 0.133 0.867 33 H 0.107 0.893 34 H 0.432 0.568 35 H 0.416 0.584 36 H 0.098 0.902 37 H 0.067 0.933 38 H 0.372 0.628 39 H 0.247 0.753 40 H 0.099 0.901 41 H 0.095 0.905 42 H 0.109 0.891 43 H 0.086 0.914 44 H 0.078 0.922 45 H 0.154 0.846 46 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.673 -19.436 -0.785 21.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.102 4.102 3 C -0.132 4.132 4 C -0.160 4.160 5 C 0.021 3.979 6 N -0.280 5.280 7 C 0.288 3.712 8 O -0.396 6.396 9 C 0.290 3.710 10 O -0.419 6.419 11 N -0.330 5.330 12 C 0.000 4.000 13 C 0.084 3.916 14 H 0.076 0.924 15 N -0.364 5.364 16 C -0.351 4.351 17 H 0.095 0.905 18 C -0.264 4.264 19 N -0.617 5.617 20 Si 0.790 3.210 21 H -0.206 1.206 22 H -0.229 1.229 23 H -0.208 1.208 24 C -0.192 4.192 25 C -0.198 4.198 26 C -0.214 4.214 27 C -0.152 4.152 28 C -0.119 4.119 29 H 0.099 0.901 30 H 0.101 0.899 31 H 0.086 0.914 32 H 0.151 0.849 33 H 0.125 0.875 34 H 0.271 0.729 35 H 0.253 0.747 36 H 0.116 0.884 37 H 0.085 0.915 38 H 0.204 0.796 39 H 0.056 0.944 40 H 0.117 0.883 41 H 0.114 0.886 42 H 0.127 0.873 43 H 0.105 0.895 44 H 0.097 0.903 45 H 0.172 0.828 46 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -8.591 -19.287 -0.615 21.123 hybrid contribution 0.057 1.699 0.015 1.700 sum -8.534 -17.588 -0.601 19.558 Atomic orbital electron populations 1.20830 0.88925 1.03736 1.03253 1.20329 0.97846 0.92621 0.99403 1.21127 0.92754 0.99230 1.00115 1.21173 0.95469 0.97193 1.02207 1.17952 0.81566 0.95147 1.03220 1.43022 1.05128 1.28178 1.51655 1.20373 0.88798 0.82089 0.79905 1.90827 1.70176 1.39549 1.39090 1.19793 0.87638 0.82588 0.80989 1.90724 1.69893 1.40443 1.40856 1.45868 1.09017 1.29258 1.48863 1.21782 0.77592 0.99467 1.01173 1.20212 0.89581 0.85001 0.96817 0.92446 1.42552 1.67059 1.12076 1.14715 1.19397 1.28236 0.92399 0.95065 0.90502 1.25386 1.02364 1.00805 0.97837 1.69797 1.45118 1.28240 1.18579 0.85416 0.77519 0.79742 0.78321 1.20575 1.22918 1.20762 1.22890 0.94614 1.04620 0.97036 1.23042 1.01055 0.97709 0.97981 1.22742 1.02270 0.91945 1.04468 1.21215 0.95154 0.96235 1.02547 1.21236 0.92945 0.98797 0.98904 0.90081 0.89894 0.91369 0.84937 0.87494 0.72862 0.74698 0.88412 0.91457 0.79572 0.94448 0.88253 0.88646 0.87301 0.89537 0.90312 0.82801 0.82259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.26 10.01 71.24 0.71 -0.55 16 2 C -0.10 -1.80 5.88 -19.84 -0.12 -1.91 16 3 C -0.11 -2.62 9.69 22.25 0.22 -2.40 16 4 C -0.14 -3.99 8.65 22.40 0.19 -3.79 16 5 C 0.11 2.86 6.28 38.21 0.24 3.10 16 6 N -0.63 -16.01 5.32 -304.83 -1.62 -17.64 16 7 C 0.51 16.17 7.62 87.24 0.67 16.84 16 8 O -0.52 -19.88 14.16 -3.32 -0.05 -19.93 16 9 C 0.51 16.62 7.89 87.24 0.69 17.31 16 10 O -0.54 -17.97 16.48 -3.26 -0.05 -18.02 16 11 N -0.68 -22.99 5.38 -464.50 -2.50 -25.49 16 12 C 0.12 3.87 5.22 86.38 0.45 4.32 16 13 C 0.19 6.83 2.70 44.99 0.12 6.95 16 14 H 0.06 2.05 7.84 -2.39 -0.02 2.03 16 15 N -0.72 -33.41 4.54 -322.95 -1.47 -34.87 16 16 C -0.22 -11.32 8.63 84.03 0.73 -10.59 16 17 H 0.08 3.82 6.91 -2.91 -0.02 3.80 16 18 C -0.07 -3.99 5.50 84.86 0.47 -3.52 16 19 N -0.97 -58.20 13.06 21.65 0.28 -57.92 16 20 Si 0.96 45.76 29.55 68.60 2.03 47.79 16 21 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 22 H -0.30 -14.85 7.11 99.48 0.71 -14.14 16 23 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 24 C -0.17 -5.43 5.36 -10.79 -0.06 -5.49 16 25 C -0.16 -4.19 10.18 30.62 0.31 -3.88 16 26 C -0.18 -5.91 9.78 30.62 0.30 -5.61 16 27 C -0.13 -2.37 9.97 22.40 0.22 -2.15 16 28 C -0.10 -1.56 9.69 22.25 0.22 -1.34 16 29 H 0.08 0.76 8.14 -2.38 -0.02 0.75 16 30 H 0.08 0.67 8.08 -2.39 -0.02 0.65 16 31 H 0.07 0.77 8.08 -2.38 -0.02 0.75 16 32 H 0.13 2.71 8.06 -2.91 -0.02 2.69 16 33 H 0.11 3.64 6.42 -2.90 -0.02 3.63 16 34 H 0.43 8.73 8.30 -92.71 -0.77 7.97 16 35 H 0.42 15.71 7.61 -92.71 -0.71 15.01 16 36 H 0.10 2.62 8.14 -2.39 -0.02 2.61 16 37 H 0.07 2.20 8.14 -2.38 -0.02 2.18 16 38 H 0.37 19.12 7.80 -92.71 -0.72 18.40 16 39 H 0.25 14.73 8.31 -92.70 -0.77 13.96 16 40 H 0.10 3.03 8.11 -2.38 -0.02 3.01 16 41 H 0.10 2.37 8.05 -2.39 -0.02 2.35 16 42 H 0.11 2.32 8.14 -2.39 -0.02 2.30 16 43 H 0.09 2.74 8.14 -2.39 -0.02 2.72 16 44 H 0.08 3.06 6.23 -2.39 -0.01 3.04 16 45 H 0.15 1.87 8.06 -2.91 -0.02 1.85 16 46 H 0.16 1.39 8.06 -2.91 -0.02 1.36 16 Total: -1.00 -67.17 389.48 0.81 -66.36 By element: Atomic # 1 Polarization: 53.62 SS G_CDS: -1.16 Total: 52.45 kcal Atomic # 6 Polarization: 1.92 SS G_CDS: 5.35 Total: 7.27 kcal Atomic # 7 Polarization: -130.61 SS G_CDS: -5.31 Total: -135.92 kcal Atomic # 8 Polarization: -37.85 SS G_CDS: -0.10 Total: -37.95 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 2.03 Total: 47.79 kcal Total: -67.17 0.81 -66.36 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713883773.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.625 kcal (2) G-P(sol) polarization free energy of solvation -67.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds