Wall clock time and date at job start Tue Mar 31 2020 16:09:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34785 * 125.90292 * 2 1 4 4 C 1.41032 * 107.50116 * 180.25514 * 3 2 1 5 5 C 1.34776 * 107.50500 * 359.75177 * 4 3 2 6 6 C 1.50705 * 125.90308 * 180.02562 * 5 4 3 7 7 N 1.36735 * 108.19042 * 0.02562 * 5 4 3 8 8 C 1.38941 * 125.69485 * 179.97438 * 7 5 4 9 9 C 1.39113 * 126.41907 * 270.00213 * 8 7 5 10 10 C 1.46844 * 126.49367 * 359.97438 * 9 8 7 11 11 O 1.21573 * 120.00727 * 0.02562 * 10 9 8 12 12 O 1.34817 * 119.99459 * 180.02562 * 10 9 8 13 13 C 1.45206 * 116.99938 * 180.02562 * 12 10 9 14 14 C 1.53002 * 109.47091 * 179.97438 * 13 12 10 15 15 C 1.52996 * 109.46891 * 179.97438 * 14 13 12 16 16 C 1.50703 * 109.46946 * 180.02562 * 15 14 13 17 17 H 1.07998 * 120.00275 * 0.02562 * 16 15 14 18 18 C 1.37884 * 119.99709 * 179.97438 * 16 15 14 19 19 N 1.31511 * 119.99896 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99653 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.47204 * 0.02562 * 20 18 16 22 22 H 1.48504 * 109.46979 * 120.00266 * 20 18 16 23 23 H 1.48498 * 109.47371 * 240.00166 * 20 18 16 24 24 C 1.41424 * 106.99729 * 180.26104 * 9 8 7 25 25 N 1.30330 * 108.16071 * 359.55474 * 24 9 8 26 26 N 1.34718 * 126.41895 * 89.99785 * 8 7 5 27 27 C 1.46500 * 125.74738 * 0.02562 * 26 8 7 28 28 H 1.08999 * 109.47692 * 270.15951 * 1 2 3 29 29 H 1.09000 * 109.46792 * 30.16627 * 1 2 3 30 30 H 1.09006 * 109.46594 * 150.15888 * 1 2 3 31 31 H 1.07993 * 126.24942 * 0.04142 * 3 2 1 32 32 H 1.07998 * 126.24542 * 179.77678 * 4 3 2 33 33 H 1.08998 * 109.46965 * 269.95817 * 6 5 4 34 34 H 1.08998 * 109.47357 * 29.95762 * 6 5 4 35 35 H 1.09005 * 109.46760 * 149.95875 * 6 5 4 36 36 H 1.09001 * 109.47157 * 299.99785 * 13 12 10 37 37 H 1.09004 * 109.47122 * 59.99918 * 13 12 10 38 38 H 1.08992 * 109.47056 * 300.00206 * 14 13 12 39 39 H 1.09004 * 109.47006 * 60.00090 * 14 13 12 40 40 H 1.09001 * 109.47372 * 300.00036 * 15 14 13 41 41 H 1.08996 * 109.47261 * 60.00575 * 15 14 13 42 42 H 0.97007 * 119.99539 * 179.97438 * 19 18 16 43 43 H 1.08006 * 125.91749 * 179.73460 * 24 9 8 44 44 H 1.08995 * 109.47450 * 89.99669 * 27 26 8 45 45 H 1.08995 * 109.47031 * 210.00189 * 27 26 8 46 46 H 1.09001 * 109.46666 * 329.99779 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2974 1.0918 0.0000 4 6 3.6356 0.6466 -0.0060 5 6 3.6145 -0.7010 -0.0039 6 6 4.8213 -1.6038 -0.0080 7 7 2.3090 -1.1075 0.0027 8 6 1.8704 -2.4259 0.0061 9 6 1.6045 -3.2108 -1.1112 10 6 1.7337 -2.8027 -2.5159 11 8 2.1065 -1.6786 -2.7907 12 8 1.4390 -3.6747 -3.5009 13 6 1.5901 -3.2032 -4.8659 14 6 1.2133 -4.3236 -5.8373 15 6 1.3720 -3.8265 -7.2755 16 6 1.0002 -4.9299 -8.2323 17 1 0.6822 -5.8896 -7.8525 18 6 1.0652 -4.7138 -9.5925 19 7 1.4519 -3.5450 -10.0549 20 14 0.6051 -6.0818 -10.7785 21 1 0.2073 -7.2893 -10.0110 22 1 -0.5300 -5.6396 -11.6278 23 1 1.7714 -6.4038 -11.6393 24 6 1.1799 -4.4739 -0.6376 25 7 1.2008 -4.4472 0.6652 26 7 1.6230 -3.1836 1.0922 27 6 1.7707 -2.7562 2.4857 28 1 -0.3634 0.0029 1.0276 29 1 -0.3633 0.8885 -0.5164 30 1 -0.3633 -0.8915 -0.5114 31 1 1.9664 2.1197 0.0006 32 1 4.5164 1.2715 -0.0109 33 1 5.1071 -1.8235 -1.0366 34 1 5.6479 -1.1077 0.5007 35 1 4.5816 -2.5330 0.5090 36 1 0.9369 -2.3459 -5.0286 37 1 2.6257 -2.9084 -5.0359 38 1 1.8668 -5.1806 -5.6745 39 1 0.1778 -4.6188 -5.6674 40 1 0.7181 -2.9696 -7.4380 41 1 2.4072 -3.5311 -7.4457 42 1 1.4980 -3.3932 -11.0119 43 1 0.8912 -5.3157 -1.2496 44 1 0.8322 -2.3262 2.8352 45 1 2.0290 -3.6159 3.1039 46 1 2.5609 -2.0086 2.5545 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000064121267.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:09:21 Heat of formation + Delta-G solvation = 32.853271 kcal Electronic energy + Delta-G solvation = -28173.644104 eV Core-core repulsion = 24259.071046 eV Total energy + Delta-G solvation = -3914.573058 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.52579 -40.91687 -39.71942 -36.27488 -34.21461 -33.89037 -33.03826 -32.88045 -31.67364 -29.46807 -29.40072 -27.84778 -26.85906 -24.43272 -24.01673 -22.79266 -22.14678 -20.94555 -20.70530 -20.32431 -19.03844 -17.75832 -16.99574 -16.51499 -16.39533 -15.92004 -15.85890 -15.76884 -14.78899 -14.49542 -14.45077 -14.08527 -13.91510 -13.75468 -13.48782 -13.42936 -13.18064 -13.15289 -13.08317 -12.69695 -12.35627 -12.17250 -12.13771 -12.05385 -11.88701 -11.75633 -11.45248 -10.96988 -10.62370 -10.59412 -10.33318 -10.30775 -10.06829 -9.69479 -9.49881 -9.22384 -9.13277 -9.04266 -8.37609 -8.03943 -6.02138 -4.04973 0.70652 1.39306 1.71836 1.86483 2.57943 2.81367 2.96594 3.08084 3.31092 3.38524 3.42862 3.98570 4.36951 4.44924 4.53404 4.57448 4.71459 4.73935 4.84728 4.90932 4.96063 5.06427 5.23773 5.28788 5.32799 5.33966 5.37010 5.53818 5.61455 5.62491 5.68117 5.68813 5.88356 6.01559 6.02441 6.06207 6.15143 6.53277 6.57235 6.80451 6.87742 6.92026 6.96125 7.01241 7.18689 7.62680 7.73664 7.96418 8.02712 8.37755 9.01625 9.59270 11.09370 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.017884 B = 0.002435 C = 0.002295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1565.309861 B =11497.945615 C =12199.525750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.036 3.964 3 C -0.180 4.180 4 C -0.180 4.180 5 C 0.034 3.966 6 C -0.085 4.085 7 N -0.391 5.391 8 C 0.354 3.646 9 C -0.249 4.249 10 C 0.532 3.468 11 O -0.501 6.501 12 O -0.353 6.353 13 C 0.072 3.928 14 C -0.108 4.108 15 C 0.024 3.976 16 C -0.520 4.520 17 H 0.058 0.942 18 C 0.056 3.944 19 N -0.894 5.894 20 Si 0.894 3.106 21 H -0.272 1.272 22 H -0.284 1.284 23 H -0.284 1.284 24 C 0.111 3.889 25 N -0.274 5.274 26 N -0.354 5.354 27 C 0.093 3.907 28 H 0.068 0.932 29 H 0.086 0.914 30 H 0.061 0.939 31 H 0.142 0.858 32 H 0.142 0.858 33 H 0.077 0.923 34 H 0.083 0.917 35 H 0.055 0.945 36 H 0.066 0.934 37 H 0.066 0.934 38 H 0.060 0.940 39 H 0.060 0.940 40 H 0.019 0.981 41 H 0.019 0.981 42 H 0.261 0.739 43 H 0.210 0.790 44 H 0.084 0.916 45 H 0.101 0.899 46 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.991 5.447 29.136 29.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.071 4.071 3 C -0.205 4.205 4 C -0.204 4.204 5 C -0.072 4.072 6 C -0.143 4.143 7 N -0.071 5.071 8 C 0.132 3.868 9 C -0.264 4.264 10 C 0.375 3.625 11 O -0.390 6.390 12 O -0.270 6.270 13 C -0.001 4.001 14 C -0.146 4.146 15 C -0.013 4.013 16 C -0.558 4.558 17 H 0.076 0.924 18 C -0.145 4.145 19 N -0.534 5.534 20 Si 0.722 3.278 21 H -0.197 1.197 22 H -0.210 1.210 23 H -0.210 1.210 24 C -0.075 4.075 25 N -0.094 5.094 26 N -0.134 5.134 27 C -0.048 4.048 28 H 0.086 0.914 29 H 0.104 0.896 30 H 0.080 0.920 31 H 0.160 0.840 32 H 0.160 0.840 33 H 0.095 0.905 34 H 0.102 0.898 35 H 0.074 0.926 36 H 0.085 0.915 37 H 0.084 0.916 38 H 0.079 0.921 39 H 0.079 0.921 40 H 0.038 0.962 41 H 0.038 0.962 42 H 0.070 0.930 43 H 0.226 0.774 44 H 0.103 0.897 45 H 0.120 0.880 46 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 1.828 4.929 30.086 30.542 hybrid contribution -0.054 -0.092 -1.614 1.618 sum 1.774 4.838 28.472 28.934 Atomic orbital electron populations 1.20331 0.88108 1.03771 1.02120 1.20396 0.93273 0.84380 1.09028 1.20680 0.92590 0.97326 1.09859 1.20673 0.97553 0.92356 1.09841 1.20402 0.83002 0.94685 1.09160 1.20337 0.93418 0.97255 1.03281 1.40337 1.06269 1.00165 1.60361 1.17613 0.97988 0.83854 0.87312 1.19274 1.20046 0.96322 0.90738 1.19650 0.74669 0.83152 0.85048 1.90909 1.43051 1.20577 1.84420 1.86531 1.79265 1.43758 1.17415 1.23495 1.01866 0.99354 0.75352 1.21762 1.01305 0.96138 0.95374 1.19054 0.97620 0.96968 0.87701 1.21214 1.45023 0.98671 0.90935 0.92365 1.25035 0.95295 0.95661 0.98518 1.69979 1.47576 1.22302 1.13496 0.86500 0.78108 0.82190 0.80998 1.19658 1.20990 1.20984 1.24249 0.94926 0.97128 0.91215 1.77349 1.21803 0.96678 1.13595 1.48898 1.49153 1.09119 1.06270 1.22075 1.03852 1.02189 0.76690 0.91370 0.89555 0.91955 0.84024 0.84022 0.90480 0.89788 0.92606 0.91545 0.91555 0.92116 0.92122 0.96232 0.96231 0.92959 0.77375 0.89716 0.88018 0.89110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.84 10.09 36.01 0.36 -0.47 16 2 C 0.04 0.43 6.86 -81.63 -0.56 -0.13 16 3 C -0.18 -2.04 10.76 -39.75 -0.43 -2.46 16 4 C -0.18 -2.03 10.76 -39.75 -0.43 -2.46 16 5 C 0.03 0.41 6.86 -81.63 -0.56 -0.15 16 6 C -0.09 -0.83 10.09 36.01 0.36 -0.46 16 7 N -0.39 -4.84 2.03 -53.85 -0.11 -4.95 16 8 C 0.35 4.37 5.73 -153.07 -0.88 3.50 16 9 C -0.25 -3.44 6.15 -104.88 -0.64 -4.08 16 10 C 0.53 8.94 7.94 34.21 0.27 9.21 16 11 O -0.50 -9.68 16.08 -19.32 -0.31 -9.99 16 12 O -0.35 -6.10 10.07 -40.81 -0.41 -6.51 16 13 C 0.07 1.37 5.48 37.16 0.20 1.57 16 14 C -0.11 -2.26 5.53 -26.73 -0.15 -2.41 16 15 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 16 C -0.52 -14.71 9.11 -34.44 -0.31 -15.02 16 17 H 0.06 1.59 7.74 -52.49 -0.41 1.19 16 18 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 19 N -0.89 -26.97 13.29 55.43 0.74 -26.23 16 20 Si 0.89 21.63 29.54 -169.99 -5.02 16.61 16 21 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 22 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 23 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 24 C 0.11 1.27 11.86 -16.98 -0.20 1.07 16 25 N -0.27 -3.04 12.47 30.87 0.39 -2.66 16 26 N -0.35 -3.60 3.99 -66.65 -0.27 -3.86 16 27 C 0.09 0.56 11.37 59.85 0.68 1.24 16 28 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 30 H 0.06 0.70 7.83 -51.93 -0.41 0.29 16 31 H 0.14 1.30 8.06 -52.49 -0.42 0.88 16 32 H 0.14 1.29 8.06 -52.49 -0.42 0.87 16 33 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.05 0.52 7.84 -51.93 -0.41 0.11 16 36 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 37 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 38 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 39 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 40 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 43 H 0.21 1.86 8.06 -52.48 -0.42 1.44 16 44 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 45 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 46 H 0.09 0.50 8.07 -51.93 -0.42 0.08 16 LS Contribution 399.46 15.07 6.02 6.02 Total: -1.00 -34.38 399.46 -8.61 -42.99 By element: Atomic # 1 Polarization: 4.76 SS G_CDS: -7.12 Total: -2.35 kcal Atomic # 6 Polarization: -6.56 SS G_CDS: -2.51 Total: -9.07 kcal Atomic # 7 Polarization: -38.44 SS G_CDS: 0.75 Total: -37.70 kcal Atomic # 8 Polarization: -15.78 SS G_CDS: -0.72 Total: -16.50 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -34.38 -8.61 -42.99 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000064121267.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.844 kcal (2) G-P(sol) polarization free energy of solvation -34.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.990 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds