Wall clock time and date at job start Tue Mar 31 2020 16:09:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34785 * 125.90292 * 2 1 4 4 C 1.41032 * 107.50116 * 180.25514 * 3 2 1 5 5 C 1.34776 * 107.50500 * 359.75177 * 4 3 2 6 6 C 1.50705 * 125.90308 * 180.02562 * 5 4 3 7 7 N 1.36735 * 108.19042 * 0.02562 * 5 4 3 8 8 C 1.38941 * 125.69485 * 179.97438 * 7 5 4 9 9 C 1.39113 * 126.41907 * 270.00213 * 8 7 5 10 10 C 1.46844 * 126.49367 * 359.97438 * 9 8 7 11 11 O 1.21573 * 120.00727 * 0.02562 * 10 9 8 12 12 O 1.34817 * 119.99459 * 180.02562 * 10 9 8 13 13 C 1.45206 * 116.99938 * 180.02562 * 12 10 9 14 14 C 1.53002 * 109.47091 * 179.97438 * 13 12 10 15 15 C 1.52996 * 109.46891 * 179.97438 * 14 13 12 16 16 C 1.50703 * 109.46946 * 180.02562 * 15 14 13 17 17 H 1.07998 * 120.00275 * 0.02562 * 16 15 14 18 18 C 1.37884 * 119.99709 * 179.97438 * 16 15 14 19 19 N 1.31511 * 119.99896 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99653 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.47204 * 0.02562 * 20 18 16 22 22 H 1.48504 * 109.46979 * 120.00266 * 20 18 16 23 23 H 1.48498 * 109.47371 * 240.00166 * 20 18 16 24 24 C 1.41424 * 106.99729 * 180.26104 * 9 8 7 25 25 N 1.30330 * 108.16071 * 359.55474 * 24 9 8 26 26 N 1.34718 * 126.41895 * 89.99785 * 8 7 5 27 27 C 1.46500 * 125.74738 * 0.02562 * 26 8 7 28 28 H 1.08999 * 109.47692 * 270.15951 * 1 2 3 29 29 H 1.09000 * 109.46792 * 30.16627 * 1 2 3 30 30 H 1.09006 * 109.46594 * 150.15888 * 1 2 3 31 31 H 1.07993 * 126.24942 * 0.04142 * 3 2 1 32 32 H 1.07998 * 126.24542 * 179.77678 * 4 3 2 33 33 H 1.08998 * 109.46965 * 269.95817 * 6 5 4 34 34 H 1.08998 * 109.47357 * 29.95762 * 6 5 4 35 35 H 1.09005 * 109.46760 * 149.95875 * 6 5 4 36 36 H 1.09001 * 109.47157 * 299.99785 * 13 12 10 37 37 H 1.09004 * 109.47122 * 59.99918 * 13 12 10 38 38 H 1.08992 * 109.47056 * 300.00206 * 14 13 12 39 39 H 1.09004 * 109.47006 * 60.00090 * 14 13 12 40 40 H 1.09001 * 109.47372 * 300.00036 * 15 14 13 41 41 H 1.08996 * 109.47261 * 60.00575 * 15 14 13 42 42 H 0.97007 * 119.99539 * 179.97438 * 19 18 16 43 43 H 1.08006 * 125.91749 * 179.73460 * 24 9 8 44 44 H 1.08995 * 109.47450 * 89.99669 * 27 26 8 45 45 H 1.08995 * 109.47031 * 210.00189 * 27 26 8 46 46 H 1.09001 * 109.46666 * 329.99779 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2974 1.0918 0.0000 4 6 3.6356 0.6466 -0.0060 5 6 3.6145 -0.7010 -0.0039 6 6 4.8213 -1.6038 -0.0080 7 7 2.3090 -1.1075 0.0027 8 6 1.8704 -2.4259 0.0061 9 6 1.6045 -3.2108 -1.1112 10 6 1.7337 -2.8027 -2.5159 11 8 2.1065 -1.6786 -2.7907 12 8 1.4390 -3.6747 -3.5009 13 6 1.5901 -3.2032 -4.8659 14 6 1.2133 -4.3236 -5.8373 15 6 1.3720 -3.8265 -7.2755 16 6 1.0002 -4.9299 -8.2323 17 1 0.6822 -5.8896 -7.8525 18 6 1.0652 -4.7138 -9.5925 19 7 1.4519 -3.5450 -10.0549 20 14 0.6051 -6.0818 -10.7785 21 1 0.2073 -7.2893 -10.0110 22 1 -0.5300 -5.6396 -11.6278 23 1 1.7714 -6.4038 -11.6393 24 6 1.1799 -4.4739 -0.6376 25 7 1.2008 -4.4472 0.6652 26 7 1.6230 -3.1836 1.0922 27 6 1.7707 -2.7562 2.4857 28 1 -0.3634 0.0029 1.0276 29 1 -0.3633 0.8885 -0.5164 30 1 -0.3633 -0.8915 -0.5114 31 1 1.9664 2.1197 0.0006 32 1 4.5164 1.2715 -0.0109 33 1 5.1071 -1.8235 -1.0366 34 1 5.6479 -1.1077 0.5007 35 1 4.5816 -2.5330 0.5090 36 1 0.9369 -2.3459 -5.0286 37 1 2.6257 -2.9084 -5.0359 38 1 1.8668 -5.1806 -5.6745 39 1 0.1778 -4.6188 -5.6674 40 1 0.7181 -2.9696 -7.4380 41 1 2.4072 -3.5311 -7.4457 42 1 1.4980 -3.3932 -11.0119 43 1 0.8912 -5.3157 -1.2496 44 1 0.8322 -2.3262 2.8352 45 1 2.0290 -3.6159 3.1039 46 1 2.5609 -2.0086 2.5545 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000064121267.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:09:21 Heat of formation + Delta-G solvation = 15.759012 kcal Electronic energy + Delta-G solvation = -28174.385366 eV Core-core repulsion = 24259.071046 eV Total energy + Delta-G solvation = -3915.314320 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.40945 -41.79985 -41.06690 -37.73798 -35.92615 -34.94901 -33.93842 -33.67901 -33.61831 -30.46313 -30.19928 -29.08092 -28.21968 -25.55479 -25.23286 -24.23378 -23.01870 -22.15695 -22.06238 -21.54951 -19.99546 -18.91928 -18.54293 -17.91983 -17.70323 -17.31929 -16.80929 -16.69347 -16.46719 -15.64966 -15.57886 -15.27700 -14.81582 -14.78347 -14.55485 -14.25082 -14.14154 -13.99293 -13.96234 -13.79000 -13.71056 -13.65405 -13.45939 -13.15209 -12.92360 -12.84477 -12.56858 -12.52334 -12.49457 -12.27716 -12.07257 -11.76571 -11.43466 -11.41135 -11.21645 -10.88540 -10.57397 -10.18202 -9.90596 -8.89087 -8.21148 -6.32558 -0.27780 0.58024 0.74362 0.98065 1.42091 1.42405 1.53842 1.57373 1.88403 1.92090 1.96610 2.42120 3.12923 3.16240 3.55249 3.58637 3.83462 3.94395 4.00185 4.07268 4.10359 4.15317 4.20245 4.28057 4.30002 4.42244 4.45366 4.47025 4.57213 4.60464 4.76884 4.80632 4.85131 4.88825 4.93421 5.03942 5.08618 5.18566 5.24766 5.33676 5.38145 5.51317 5.64609 5.81049 5.96452 6.07985 6.08557 6.19786 6.32973 6.68406 6.83798 7.37006 8.91418 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.017884 B = 0.002435 C = 0.002295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1565.309861 B =11497.945615 C =12199.525750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.017 3.983 3 C -0.190 4.190 4 C -0.188 4.188 5 C 0.015 3.985 6 C -0.081 4.081 7 N -0.398 5.398 8 C 0.359 3.641 9 C -0.280 4.280 10 C 0.533 3.467 11 O -0.534 6.534 12 O -0.348 6.348 13 C 0.083 3.917 14 C -0.092 4.092 15 C 0.026 3.974 16 C -0.541 4.541 17 H 0.066 0.934 18 C -0.002 4.002 19 N -0.934 5.934 20 Si 0.969 3.031 21 H -0.259 1.259 22 H -0.279 1.279 23 H -0.279 1.279 24 C 0.118 3.882 25 N -0.276 5.276 26 N -0.341 5.341 27 C 0.082 3.918 28 H 0.091 0.909 29 H 0.094 0.906 30 H 0.042 0.958 31 H 0.159 0.841 32 H 0.160 0.840 33 H 0.059 0.941 34 H 0.109 0.891 35 H 0.056 0.944 36 H 0.060 0.940 37 H 0.060 0.940 38 H 0.069 0.931 39 H 0.069 0.931 40 H -0.004 1.004 41 H -0.004 1.004 42 H 0.264 0.736 43 H 0.230 0.770 44 H 0.102 0.898 45 H 0.122 0.878 46 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.582 4.319 30.921 31.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.089 4.089 3 C -0.214 4.214 4 C -0.212 4.212 5 C -0.092 4.092 6 C -0.138 4.138 7 N -0.079 5.079 8 C 0.135 3.865 9 C -0.295 4.295 10 C 0.379 3.621 11 O -0.424 6.424 12 O -0.264 6.264 13 C 0.010 3.990 14 C -0.129 4.129 15 C -0.011 4.011 16 C -0.579 4.579 17 H 0.085 0.915 18 C -0.200 4.200 19 N -0.575 5.575 20 Si 0.793 3.207 21 H -0.183 1.183 22 H -0.204 1.204 23 H -0.204 1.204 24 C -0.068 4.068 25 N -0.097 5.097 26 N -0.121 5.121 27 C -0.057 4.057 28 H 0.110 0.890 29 H 0.113 0.887 30 H 0.062 0.938 31 H 0.177 0.823 32 H 0.177 0.823 33 H 0.078 0.922 34 H 0.128 0.872 35 H 0.075 0.925 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.088 0.912 39 H 0.088 0.912 40 H 0.014 0.986 41 H 0.014 0.986 42 H 0.073 0.927 43 H 0.246 0.754 44 H 0.121 0.879 45 H 0.140 0.860 46 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 1.413 3.781 31.923 32.177 hybrid contribution 0.094 0.339 -2.047 2.077 sum 1.507 4.121 29.875 30.196 Atomic orbital electron populations 1.20373 0.86978 1.03189 1.03457 1.20836 0.94277 0.84544 1.09281 1.21010 0.92692 0.98122 1.09559 1.21013 0.98307 0.92513 1.09395 1.20833 0.83399 0.95423 1.09526 1.20358 0.93582 0.97353 1.02533 1.40475 1.06589 1.00180 1.60619 1.17643 0.97253 0.83965 0.87668 1.19193 1.22945 0.98062 0.89304 1.20117 0.73604 0.82558 0.85867 1.90887 1.44812 1.21821 1.84892 1.86507 1.79483 1.43778 1.16669 1.23122 1.01255 0.98291 0.76345 1.21453 1.02069 0.96616 0.92794 1.18933 0.95453 0.95919 0.90818 1.21655 1.44970 0.99436 0.91812 0.91536 1.26022 0.95055 0.98280 1.00633 1.70114 1.48653 1.24587 1.14113 0.85337 0.77873 0.79106 0.78362 1.18254 1.20434 1.20426 1.24539 0.94108 0.96765 0.91404 1.77348 1.21945 0.97074 1.13307 1.49229 1.47298 1.08395 1.07186 1.22478 1.05132 1.03405 0.74652 0.89042 0.88727 0.93844 0.82326 0.82285 0.92180 0.87195 0.92453 0.92182 0.92188 0.91228 0.91236 0.98587 0.98584 0.92704 0.75409 0.87942 0.85951 0.88499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.55 10.09 71.24 0.72 -0.83 16 2 C 0.02 0.40 6.86 41.00 0.28 0.68 16 3 C -0.19 -4.13 10.76 22.16 0.24 -3.89 16 4 C -0.19 -4.09 10.76 22.16 0.24 -3.85 16 5 C 0.01 0.34 6.86 41.00 0.28 0.62 16 6 C -0.08 -1.51 10.09 71.24 0.72 -0.79 16 7 N -0.40 -9.63 2.03 -324.29 -0.66 -10.28 16 8 C 0.36 8.59 5.73 132.37 0.76 9.35 16 9 C -0.28 -7.63 6.15 -20.03 -0.12 -7.76 16 10 C 0.53 18.17 7.94 70.07 0.56 18.73 16 11 O -0.53 -21.21 16.08 19.60 0.32 -20.89 16 12 O -0.35 -12.04 10.07 -57.29 -0.58 -12.62 16 13 C 0.08 3.22 5.48 71.98 0.39 3.62 16 14 C -0.09 -3.84 5.53 30.59 0.17 -3.68 16 15 C 0.03 1.38 4.97 29.85 0.15 1.53 16 16 C -0.54 -30.74 9.11 25.60 0.23 -30.51 16 17 H 0.07 3.59 7.74 -2.91 -0.02 3.56 16 18 C 0.00 -0.13 5.46 84.66 0.46 0.34 16 19 N -0.93 -57.32 13.29 21.45 0.28 -57.03 16 20 Si 0.97 44.20 29.54 68.60 2.03 46.23 16 21 H -0.26 -11.15 7.11 99.48 0.71 -10.44 16 22 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 23 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 24 C 0.12 2.54 11.86 85.70 1.02 3.56 16 25 N -0.28 -5.63 12.47 -56.24 -0.70 -6.34 16 26 N -0.34 -6.35 3.99 -364.77 -1.46 -7.81 16 27 C 0.08 0.79 11.37 127.77 1.45 2.24 16 28 H 0.09 1.22 8.14 -2.39 -0.02 1.21 16 29 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.04 0.97 7.83 -2.38 -0.02 0.95 16 31 H 0.16 2.72 8.06 -2.91 -0.02 2.70 16 32 H 0.16 2.71 8.06 -2.91 -0.02 2.69 16 33 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.06 1.02 7.84 -2.38 -0.02 1.00 16 36 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 37 H 0.06 2.38 8.14 -2.38 -0.02 2.36 16 38 H 0.07 2.79 8.14 -2.39 -0.02 2.77 16 39 H 0.07 2.78 8.14 -2.38 -0.02 2.76 16 40 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 16 41 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 16 42 H 0.26 15.15 8.31 -92.70 -0.77 14.38 16 43 H 0.23 3.70 8.06 -2.91 -0.02 3.67 16 44 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 45 H 0.12 0.70 8.14 -2.39 -0.02 0.68 16 46 H 0.10 0.86 8.07 -2.39 -0.02 0.84 16 Total: -1.00 -74.68 399.46 7.75 -66.93 By element: Atomic # 1 Polarization: 11.49 SS G_CDS: 0.97 Total: 12.46 kcal Atomic # 6 Polarization: -18.19 SS G_CDS: 7.54 Total: -10.64 kcal Atomic # 7 Polarization: -78.93 SS G_CDS: -2.53 Total: -81.46 kcal Atomic # 8 Polarization: -33.25 SS G_CDS: -0.26 Total: -33.51 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.23 kcal Total: -74.68 7.75 -66.93 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000064121267.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.689 kcal (2) G-P(sol) polarization free energy of solvation -74.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.930 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds