Wall clock time and date at job start Tue Mar 31 2020 16:11:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42903 * 113.99838 * 2 1 4 4 C 1.53003 * 109.46870 * 179.97438 * 3 2 1 5 5 N 1.46900 * 109.46882 * 66.96559 * 4 3 2 6 6 C 1.46904 * 110.99970 * 289.70943 * 5 4 3 7 7 C 1.50695 * 109.47225 * 299.54055 * 6 5 4 8 8 H 1.08003 * 120.00159 * 354.96414 * 7 6 5 9 9 C 1.37878 * 119.99822 * 174.96971 * 7 6 5 10 10 N 1.31523 * 119.99924 * 180.02562 * 9 7 6 11 11 Si 1.86800 * 120.00186 * 359.97438 * 9 7 6 12 12 H 1.48501 * 109.46646 * 90.00151 * 11 9 7 13 13 H 1.48497 * 109.47360 * 210.00204 * 11 9 7 14 14 H 1.48499 * 109.46968 * 330.00670 * 11 9 7 15 15 C 1.46899 * 111.00312 * 53.66693 * 5 4 3 16 16 C 1.50696 * 109.47112 * 66.04656 * 15 5 4 17 17 C 1.38126 * 119.97509 * 115.00069 * 16 15 5 18 18 C 1.39968 * 118.92503 * 180.02562 * 17 16 15 19 19 O 1.22095 * 120.52091 * 180.02562 * 18 17 16 20 20 N 1.35018 * 118.95819 * 359.97438 * 18 17 16 21 21 C 1.36181 * 119.64983 * 180.02562 * 20 18 17 22 22 C 1.35203 * 120.74096 * 180.25227 * 21 20 18 23 23 C 1.40193 * 120.15136 * 359.50147 * 22 21 20 24 24 C 1.36285 * 119.56414 * 0.47264 * 23 22 21 25 25 C 1.50699 * 120.27399 * 179.75355 * 24 23 22 26 26 C 1.36700 * 119.87785 * 359.97438 * 20 18 17 27 27 N 1.32385 * 119.97246 * 294.98135 * 16 15 5 28 28 H 1.08994 * 109.47337 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47214 * 300.00322 * 1 2 3 30 30 H 1.09004 * 109.47068 * 59.99956 * 1 2 3 31 31 H 1.08999 * 109.47423 * 60.00065 * 3 2 1 32 32 H 1.09001 * 109.47243 * 299.99570 * 3 2 1 33 33 H 1.09000 * 109.47402 * 306.96409 * 4 3 2 34 34 H 1.09004 * 109.46927 * 186.96239 * 4 3 2 35 35 H 1.08996 * 109.46891 * 59.54067 * 6 5 4 36 36 H 1.09000 * 109.46682 * 179.54010 * 6 5 4 37 37 H 0.96994 * 120.00039 * 179.97438 * 10 9 7 38 38 H 1.08997 * 109.47044 * 306.04408 * 15 5 4 39 39 H 1.09006 * 109.47267 * 186.04382 * 15 5 4 40 40 H 1.07999 * 120.53443 * 359.97421 * 17 16 15 41 41 H 1.08000 * 119.63389 * 359.97438 * 21 20 18 42 42 H 1.07996 * 119.92638 * 179.72283 * 22 21 20 43 43 H 1.08003 * 120.22038 * 180.25326 * 23 22 21 44 44 H 1.08996 * 109.46967 * 270.02246 * 25 24 23 45 45 H 1.08999 * 109.47009 * 30.02563 * 25 24 23 46 46 H 1.09000 * 109.46873 * 150.02181 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9812 0.6055 -1.2736 6 6 3.6075 -0.8121 -1.3670 7 6 4.2588 -1.5783 -0.2446 8 1 4.9514 -1.0808 0.4182 9 6 3.9706 -2.9144 -0.0639 10 7 4.5386 -3.5830 0.9160 11 14 2.7724 -3.7748 -1.2099 12 1 3.5137 -4.3460 -2.3629 13 1 2.0818 -4.8655 -0.4759 14 1 1.7691 -2.7968 -1.7020 15 6 3.4496 1.3662 -2.4123 16 6 4.0499 2.7484 -2.4173 17 6 4.8752 3.1387 -3.4538 18 6 5.4213 4.4273 -3.4359 19 8 6.1542 4.8027 -4.3374 20 7 5.1241 5.2490 -2.4067 21 6 5.6473 6.5059 -2.3753 22 6 5.3685 7.3453 -1.3528 23 6 4.5243 6.9320 -0.3126 24 6 3.9953 5.6762 -0.3348 25 6 3.0904 5.2133 0.7779 26 6 4.3009 4.8157 -1.4051 27 7 3.7854 3.5879 -1.4283 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.6886 1.8464 0.8900 32 1 1.6886 1.8464 -0.8900 33 1 3.8486 0.5401 0.8220 34 1 3.9781 2.1729 0.1252 35 1 2.5244 -0.9080 -1.2918 36 1 3.9424 -1.2138 -2.3233 37 1 4.3356 -4.5228 1.0434 38 1 2.3657 1.4411 -2.3249 39 1 3.7048 0.8560 -3.3412 40 1 5.0963 2.4601 -4.2644 41 1 6.2959 6.8345 -3.1740 42 1 5.7941 8.3378 -1.3390 43 1 4.2975 7.6030 0.5027 44 1 3.6877 4.7494 1.5627 45 1 2.5522 6.0679 1.1878 46 1 2.3767 4.4877 0.3876 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072690343.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:11:40 Heat of formation + Delta-G solvation = 24.322189 kcal Electronic energy + Delta-G solvation = -29402.723813 eV Core-core repulsion = 25487.780820 eV Total energy + Delta-G solvation = -3914.942993 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.76704 -38.77889 -38.52648 -37.32305 -35.64552 -34.87608 -32.71857 -32.05767 -30.46860 -29.18124 -28.50921 -27.43768 -26.10986 -25.21206 -25.05778 -23.17511 -22.26856 -21.84689 -19.65398 -18.89603 -18.59543 -17.65405 -16.79029 -16.68113 -16.06193 -15.89549 -15.58699 -15.27560 -14.71707 -14.64196 -14.45202 -14.17558 -14.04203 -13.98036 -13.58209 -13.29961 -12.85918 -12.75566 -12.38823 -12.29468 -12.15117 -12.12612 -12.05842 -11.61326 -11.48225 -11.20917 -11.02105 -10.65605 -10.62281 -10.45824 -10.36948 -10.26993 -9.75589 -9.66802 -9.40214 -9.08628 -8.99313 -8.38313 -7.75832 -7.22095 -5.88753 -3.82657 -0.01843 0.35405 1.88899 2.01685 2.46400 3.40251 3.46729 3.51900 3.66087 3.75869 4.09042 4.19478 4.37983 4.41454 4.49844 4.58391 4.68586 5.05114 5.09269 5.16589 5.25890 5.37805 5.46225 5.49970 5.53444 5.55422 5.60454 5.63244 5.70888 5.74224 5.84443 5.90208 5.92503 5.98922 6.03758 6.07078 6.16541 6.31632 6.42452 6.48622 6.86425 7.09080 7.39486 7.65237 7.70220 7.72793 7.79085 7.98826 8.14549 8.80021 9.17736 9.74651 11.24870 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.016268 B = 0.003649 C = 0.003305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1720.732623 B = 7670.595972 C = 8470.202712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.356 6.356 3 C 0.032 3.968 4 C 0.061 3.939 5 N -0.515 5.515 6 C 0.149 3.851 7 C -0.490 4.490 8 H 0.076 0.924 9 C 0.070 3.930 10 N -0.908 5.908 11 Si 0.873 3.127 12 H -0.281 1.281 13 H -0.290 1.290 14 H -0.263 1.263 15 C 0.087 3.913 16 C 0.233 3.767 17 C -0.320 4.320 18 C 0.509 3.491 19 O -0.543 6.543 20 N -0.428 5.428 21 C 0.090 3.910 22 C -0.167 4.167 23 C -0.052 4.052 24 C -0.094 4.094 25 C -0.101 4.101 26 C 0.387 3.613 27 N -0.523 5.523 28 H 0.078 0.922 29 H 0.032 0.968 30 H 0.029 0.971 31 H 0.039 0.961 32 H 0.044 0.956 33 H 0.096 0.904 34 H 0.088 0.912 35 H 0.034 0.966 36 H 0.015 0.985 37 H 0.260 0.740 38 H 0.058 0.942 39 H 0.090 0.910 40 H 0.157 0.843 41 H 0.178 0.822 42 H 0.155 0.845 43 H 0.149 0.851 44 H 0.081 0.919 45 H 0.070 0.930 46 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.575 23.931 -1.771 24.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.274 6.274 3 C -0.046 4.046 4 C -0.068 4.068 5 N -0.238 5.238 6 C 0.024 3.976 7 C -0.529 4.529 8 H 0.094 0.906 9 C -0.130 4.130 10 N -0.548 5.548 11 Si 0.701 3.299 12 H -0.207 1.207 13 H -0.217 1.217 14 H -0.187 1.187 15 C -0.042 4.042 16 C 0.105 3.895 17 C -0.346 4.346 18 C 0.316 3.684 19 O -0.424 6.424 20 N -0.131 5.131 21 C -0.033 4.033 22 C -0.188 4.188 23 C -0.076 4.076 24 C -0.097 4.097 25 C -0.158 4.158 26 C 0.143 3.857 27 N -0.247 5.247 28 H 0.096 0.904 29 H 0.051 0.949 30 H 0.047 0.953 31 H 0.057 0.943 32 H 0.062 0.938 33 H 0.114 0.886 34 H 0.106 0.894 35 H 0.051 0.949 36 H 0.033 0.967 37 H 0.070 0.930 38 H 0.075 0.925 39 H 0.108 0.892 40 H 0.175 0.825 41 H 0.195 0.805 42 H 0.173 0.827 43 H 0.167 0.833 44 H 0.099 0.901 45 H 0.089 0.911 46 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -4.993 23.298 -1.824 23.897 hybrid contribution -1.079 -0.153 -1.236 1.648 sum -6.072 23.146 -3.061 24.124 Atomic orbital electron populations 1.22679 0.83745 1.02011 0.98643 1.88376 1.17352 1.27019 1.94700 1.23278 0.97335 0.84983 0.99011 1.22386 0.89560 1.00698 0.94109 1.62227 1.57752 1.04243 0.99567 1.20531 0.96954 0.82750 0.97411 1.20895 1.25228 0.94130 1.12618 0.90600 1.24794 0.95801 0.97271 0.95161 1.69900 1.44354 1.09222 1.31340 0.86890 0.82390 0.79447 0.81208 1.20740 1.21675 1.18722 1.21190 0.97302 0.87750 0.97916 1.21598 0.87374 0.94419 0.86122 1.22602 1.09166 0.96691 1.06146 1.17231 0.83696 0.86347 0.81123 1.90964 1.39242 1.76559 1.35633 1.44388 1.34851 1.13429 1.20397 1.22265 0.97003 0.83546 1.00484 1.20940 1.02126 1.01305 0.94386 1.21390 0.93338 0.95057 0.97819 1.19685 1.01657 0.92717 0.95603 1.20668 0.98178 1.02164 0.94778 1.20466 0.86369 0.91852 0.87054 1.68858 1.28842 0.99805 1.27205 0.90355 0.94907 0.95268 0.94315 0.93757 0.88591 0.89371 0.94876 0.96741 0.93017 0.92477 0.89176 0.82494 0.80522 0.82697 0.83335 0.90067 0.91078 0.89548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 11.01 101.05 1.11 1.52 16 2 O -0.36 -7.07 7.58 -35.23 -0.27 -7.34 16 3 C 0.03 0.54 5.65 37.16 0.21 0.75 16 4 C 0.06 1.16 5.18 -3.82 -0.02 1.14 16 5 N -0.51 -10.69 4.74 -237.52 -1.13 -11.81 16 6 C 0.15 3.60 3.40 -4.98 -0.02 3.59 16 7 C -0.49 -13.99 8.76 -34.44 -0.30 -14.29 16 8 H 0.08 2.37 7.24 -52.48 -0.38 1.99 16 9 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 10 N -0.91 -28.33 13.96 55.43 0.77 -27.56 16 11 Si 0.87 22.07 27.57 -169.99 -4.69 17.38 16 12 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 13 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 14 H -0.26 -6.36 6.40 56.52 0.36 -6.00 16 15 C 0.09 1.49 5.04 -4.98 -0.03 1.46 16 16 C 0.23 3.68 6.22 -82.40 -0.51 3.17 16 17 C -0.32 -5.08 9.69 -38.97 -0.38 -5.45 16 18 C 0.51 8.05 7.36 -15.50 -0.11 7.93 16 19 O -0.54 -9.73 16.69 4.83 0.08 -9.65 16 20 N -0.43 -5.49 2.76 -65.37 -0.18 -5.67 16 21 C 0.09 0.84 10.08 -16.70 -0.17 0.67 16 22 C -0.17 -1.01 9.99 -39.93 -0.40 -1.41 16 23 C -0.05 -0.32 9.72 -39.55 -0.38 -0.70 16 24 C -0.09 -0.84 5.90 -104.40 -0.62 -1.46 16 25 C -0.10 -0.77 9.77 36.01 0.35 -0.42 16 26 C 0.39 4.82 7.32 -155.95 -1.14 3.67 16 27 N -0.52 -7.48 6.61 -8.56 -0.06 -7.54 16 28 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 29 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.04 0.71 5.80 -51.93 -0.30 0.41 16 33 H 0.10 2.16 6.33 -51.93 -0.33 1.83 16 34 H 0.09 1.53 5.90 -51.93 -0.31 1.23 16 35 H 0.03 0.83 3.98 -51.93 -0.21 0.62 16 36 H 0.01 0.36 7.72 -51.93 -0.40 -0.04 16 37 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 38 H 0.06 0.95 5.71 -51.93 -0.30 0.65 16 39 H 0.09 1.46 7.76 -51.93 -0.40 1.06 16 40 H 0.16 2.38 7.97 -52.49 -0.42 1.96 16 41 H 0.18 1.50 7.34 -52.49 -0.39 1.11 16 42 H 0.16 0.42 8.06 -52.49 -0.42 -0.01 16 43 H 0.15 0.43 8.06 -52.48 -0.42 0.00 16 44 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.07 0.36 8.09 -51.93 -0.42 -0.06 16 46 H 0.09 0.80 7.50 -51.93 -0.39 0.41 16 LS Contribution 367.56 15.07 5.54 5.54 Total: -1.00 -35.72 367.56 -8.79 -44.51 By element: Atomic # 1 Polarization: 6.38 SS G_CDS: -6.37 Total: 0.01 kcal Atomic # 6 Polarization: 4.62 SS G_CDS: -2.50 Total: 2.13 kcal Atomic # 7 Polarization: -51.99 SS G_CDS: -0.59 Total: -52.58 kcal Atomic # 8 Polarization: -16.81 SS G_CDS: -0.19 Total: -16.99 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -4.69 Total: 17.38 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -35.72 -8.79 -44.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072690343.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.834 kcal (2) G-P(sol) polarization free energy of solvation -35.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.512 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds