Wall clock time and date at job start Tue Mar 31 2020 16:11:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42903 * 113.99838 * 2 1 4 4 C 1.53003 * 109.46870 * 179.97438 * 3 2 1 5 5 N 1.46900 * 109.46882 * 66.96559 * 4 3 2 6 6 C 1.46904 * 110.99970 * 289.70943 * 5 4 3 7 7 C 1.50695 * 109.47225 * 299.54055 * 6 5 4 8 8 H 1.08003 * 120.00159 * 354.96414 * 7 6 5 9 9 C 1.37878 * 119.99822 * 174.96971 * 7 6 5 10 10 N 1.31523 * 119.99924 * 180.02562 * 9 7 6 11 11 Si 1.86800 * 120.00186 * 359.97438 * 9 7 6 12 12 H 1.48501 * 109.46646 * 90.00151 * 11 9 7 13 13 H 1.48497 * 109.47360 * 210.00204 * 11 9 7 14 14 H 1.48499 * 109.46968 * 330.00670 * 11 9 7 15 15 C 1.46899 * 111.00312 * 53.66693 * 5 4 3 16 16 C 1.50696 * 109.47112 * 66.04656 * 15 5 4 17 17 C 1.38126 * 119.97509 * 115.00069 * 16 15 5 18 18 C 1.39968 * 118.92503 * 180.02562 * 17 16 15 19 19 O 1.22095 * 120.52091 * 180.02562 * 18 17 16 20 20 N 1.35018 * 118.95819 * 359.97438 * 18 17 16 21 21 C 1.36181 * 119.64983 * 180.02562 * 20 18 17 22 22 C 1.35203 * 120.74096 * 180.25227 * 21 20 18 23 23 C 1.40193 * 120.15136 * 359.50147 * 22 21 20 24 24 C 1.36285 * 119.56414 * 0.47264 * 23 22 21 25 25 C 1.50699 * 120.27399 * 179.75355 * 24 23 22 26 26 C 1.36700 * 119.87785 * 359.97438 * 20 18 17 27 27 N 1.32385 * 119.97246 * 294.98135 * 16 15 5 28 28 H 1.08994 * 109.47337 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47214 * 300.00322 * 1 2 3 30 30 H 1.09004 * 109.47068 * 59.99956 * 1 2 3 31 31 H 1.08999 * 109.47423 * 60.00065 * 3 2 1 32 32 H 1.09001 * 109.47243 * 299.99570 * 3 2 1 33 33 H 1.09000 * 109.47402 * 306.96409 * 4 3 2 34 34 H 1.09004 * 109.46927 * 186.96239 * 4 3 2 35 35 H 1.08996 * 109.46891 * 59.54067 * 6 5 4 36 36 H 1.09000 * 109.46682 * 179.54010 * 6 5 4 37 37 H 0.96994 * 120.00039 * 179.97438 * 10 9 7 38 38 H 1.08997 * 109.47044 * 306.04408 * 15 5 4 39 39 H 1.09006 * 109.47267 * 186.04382 * 15 5 4 40 40 H 1.07999 * 120.53443 * 359.97421 * 17 16 15 41 41 H 1.08000 * 119.63389 * 359.97438 * 21 20 18 42 42 H 1.07996 * 119.92638 * 179.72283 * 22 21 20 43 43 H 1.08003 * 120.22038 * 180.25326 * 23 22 21 44 44 H 1.08996 * 109.46967 * 270.02246 * 25 24 23 45 45 H 1.08999 * 109.47009 * 30.02563 * 25 24 23 46 46 H 1.09000 * 109.46873 * 150.02181 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9812 0.6055 -1.2736 6 6 3.6075 -0.8121 -1.3670 7 6 4.2588 -1.5783 -0.2446 8 1 4.9514 -1.0808 0.4182 9 6 3.9706 -2.9144 -0.0639 10 7 4.5386 -3.5830 0.9160 11 14 2.7724 -3.7748 -1.2099 12 1 3.5137 -4.3460 -2.3629 13 1 2.0818 -4.8655 -0.4759 14 1 1.7691 -2.7968 -1.7020 15 6 3.4496 1.3662 -2.4123 16 6 4.0499 2.7484 -2.4173 17 6 4.8752 3.1387 -3.4538 18 6 5.4213 4.4273 -3.4359 19 8 6.1542 4.8027 -4.3374 20 7 5.1241 5.2490 -2.4067 21 6 5.6473 6.5059 -2.3753 22 6 5.3685 7.3453 -1.3528 23 6 4.5243 6.9320 -0.3126 24 6 3.9953 5.6762 -0.3348 25 6 3.0904 5.2133 0.7779 26 6 4.3009 4.8157 -1.4051 27 7 3.7854 3.5879 -1.4283 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.6886 1.8464 0.8900 32 1 1.6886 1.8464 -0.8900 33 1 3.8486 0.5401 0.8220 34 1 3.9781 2.1729 0.1252 35 1 2.5244 -0.9080 -1.2918 36 1 3.9424 -1.2138 -2.3233 37 1 4.3356 -4.5228 1.0434 38 1 2.3657 1.4411 -2.3249 39 1 3.7048 0.8560 -3.3412 40 1 5.0963 2.4601 -4.2644 41 1 6.2959 6.8345 -3.1740 42 1 5.7941 8.3378 -1.3390 43 1 4.2975 7.6030 0.5027 44 1 3.6877 4.7494 1.5627 45 1 2.5522 6.0679 1.1878 46 1 2.3767 4.4877 0.3876 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072690343.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:11:39 Heat of formation + Delta-G solvation = -0.504795 kcal Electronic energy + Delta-G solvation = -29403.800392 eV Core-core repulsion = 25487.780820 eV Total energy + Delta-G solvation = -3916.019572 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.72824 -40.12479 -39.55978 -38.49747 -37.07692 -35.74786 -34.59382 -33.30576 -31.46134 -30.82495 -29.92108 -28.31081 -27.39840 -26.59200 -26.07781 -24.39866 -23.65065 -23.00914 -21.23923 -19.82361 -19.70966 -18.88958 -18.44343 -17.80221 -17.43229 -17.29355 -16.63788 -16.35968 -16.08441 -15.97846 -15.73400 -15.48271 -15.26253 -14.99019 -14.88349 -14.47936 -14.33028 -13.77466 -13.66090 -13.51076 -13.33945 -13.15163 -12.96101 -12.84488 -12.82474 -12.66604 -12.45725 -12.36277 -12.22292 -11.85360 -11.69234 -11.50535 -11.33938 -11.32443 -10.86210 -10.68925 -10.43181 -10.25103 -8.84672 -8.72793 -8.16097 -6.14408 -0.86059 -0.51298 0.84836 1.09400 1.39100 1.40836 1.53387 1.68982 2.44992 2.62928 2.83073 3.05533 3.17146 3.20967 3.39476 3.49126 3.70926 3.82024 3.92343 4.15195 4.23333 4.35342 4.42217 4.42816 4.51910 4.55752 4.58765 4.60676 4.66001 4.76710 4.82800 4.85024 4.90524 4.93377 4.95381 5.03057 5.12014 5.21889 5.33516 5.40680 5.43299 5.50255 5.64033 5.67891 6.04889 6.38873 6.49838 6.53700 6.67671 6.74018 6.87936 7.46754 9.01044 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.016268 B = 0.003649 C = 0.003305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1720.732623 B = 7670.595972 C = 8470.202712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.400 6.400 3 C 0.042 3.958 4 C 0.069 3.931 5 N -0.533 5.533 6 C 0.161 3.839 7 C -0.488 4.488 8 H 0.031 0.969 9 C 0.009 3.991 10 N -0.957 5.957 11 Si 0.941 3.059 12 H -0.274 1.274 13 H -0.288 1.288 14 H -0.244 1.244 15 C 0.093 3.907 16 C 0.239 3.761 17 C -0.354 4.354 18 C 0.502 3.498 19 O -0.580 6.580 20 N -0.427 5.427 21 C 0.054 3.946 22 C -0.129 4.129 23 C -0.020 4.020 24 C -0.112 4.112 25 C -0.099 4.099 26 C 0.374 3.626 27 N -0.541 5.541 28 H 0.076 0.924 29 H 0.053 0.947 30 H 0.048 0.952 31 H 0.061 0.939 32 H 0.059 0.941 33 H 0.051 0.949 34 H 0.104 0.896 35 H 0.038 0.962 36 H 0.012 0.988 37 H 0.262 0.738 38 H 0.067 0.933 39 H 0.093 0.907 40 H 0.150 0.850 41 H 0.180 0.820 42 H 0.204 0.796 43 H 0.199 0.801 44 H 0.077 0.923 45 H 0.105 0.895 46 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.488 27.785 -1.246 28.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.319 6.319 3 C -0.036 4.036 4 C -0.059 4.059 5 N -0.257 5.257 6 C 0.035 3.965 7 C -0.526 4.526 8 H 0.049 0.951 9 C -0.186 4.186 10 N -0.599 5.599 11 Si 0.766 3.234 12 H -0.199 1.199 13 H -0.214 1.214 14 H -0.167 1.167 15 C -0.036 4.036 16 C 0.108 3.892 17 C -0.380 4.380 18 C 0.310 3.690 19 O -0.464 6.464 20 N -0.128 5.128 21 C -0.068 4.068 22 C -0.149 4.149 23 C -0.043 4.043 24 C -0.114 4.114 25 C -0.156 4.156 26 C 0.133 3.867 27 N -0.266 5.266 28 H 0.094 0.906 29 H 0.072 0.928 30 H 0.067 0.933 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.069 0.931 34 H 0.122 0.878 35 H 0.056 0.944 36 H 0.030 0.970 37 H 0.070 0.930 38 H 0.085 0.915 39 H 0.111 0.889 40 H 0.168 0.832 41 H 0.197 0.803 42 H 0.221 0.779 43 H 0.216 0.784 44 H 0.096 0.904 45 H 0.124 0.876 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -6.916 27.235 -1.274 28.128 hybrid contribution -0.418 -1.007 -1.194 1.617 sum -7.333 26.229 -2.468 27.346 Atomic orbital electron populations 1.22850 0.81452 1.02581 1.00595 1.88269 1.20013 1.28602 1.95054 1.23170 0.95275 0.84424 1.00699 1.22232 0.91735 1.00071 0.91876 1.62041 1.59076 1.03092 1.01479 1.20238 0.96533 0.84546 0.95151 1.21099 1.24146 0.94512 1.12889 0.95092 1.25677 0.97896 0.98135 0.96909 1.70062 1.46508 1.09668 1.33673 0.85797 0.80255 0.78388 0.78973 1.19935 1.21363 1.16706 1.21137 0.97828 0.88229 0.96369 1.21317 0.87278 0.94029 0.86613 1.22516 1.11122 0.97468 1.06879 1.17159 0.83520 0.86715 0.81566 1.90917 1.40983 1.77357 1.37133 1.44268 1.34559 1.14352 1.19583 1.22739 0.98599 0.82847 1.02632 1.21612 0.99306 1.02075 0.91885 1.22053 0.90187 0.93981 0.98113 1.20035 1.02902 0.93489 0.95010 1.20703 0.97683 1.03152 0.94044 1.21058 0.86014 0.91925 0.87714 1.68767 1.30110 1.00812 1.26914 0.90574 0.92849 0.93335 0.92075 0.92279 0.93061 0.87787 0.94428 0.96968 0.92958 0.91502 0.88856 0.83201 0.80320 0.77937 0.78353 0.90440 0.87642 0.91434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.62 11.01 113.37 1.25 1.87 16 2 O -0.40 -15.63 7.58 -148.98 -1.13 -16.76 16 3 C 0.04 1.39 5.65 71.98 0.41 1.80 16 4 C 0.07 2.72 5.18 86.30 0.45 3.16 16 5 N -0.53 -22.85 4.74 -905.36 -4.29 -27.14 16 6 C 0.16 7.99 3.40 85.55 0.29 8.28 16 7 C -0.49 -29.13 8.76 25.60 0.22 -28.90 16 8 H 0.03 2.07 7.24 -2.91 -0.02 2.05 16 9 C 0.01 0.57 5.47 84.65 0.46 1.04 16 10 N -0.96 -62.05 13.96 21.45 0.30 -61.75 16 11 Si 0.94 46.22 27.57 68.60 1.89 48.11 16 12 H -0.27 -13.05 7.11 99.48 0.71 -12.34 16 13 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 14 H -0.24 -11.12 6.40 99.48 0.64 -10.48 16 15 C 0.09 3.21 5.04 85.56 0.43 3.64 16 16 C 0.24 7.75 6.22 42.45 0.26 8.01 16 17 C -0.35 -11.87 9.69 22.66 0.22 -11.65 16 18 C 0.50 16.52 7.36 84.62 0.62 17.15 16 19 O -0.58 -21.79 16.69 -5.63 -0.09 -21.89 16 20 N -0.43 -10.71 2.76 -478.63 -1.32 -12.03 16 21 C 0.05 0.88 10.08 83.32 0.84 1.72 16 22 C -0.13 -0.86 9.99 22.04 0.22 -0.64 16 23 C -0.02 -0.12 9.72 22.29 0.22 0.09 16 24 C -0.11 -1.61 5.90 -19.72 -0.12 -1.72 16 25 C -0.10 -1.17 9.77 71.24 0.70 -0.47 16 26 C 0.37 8.84 7.32 133.98 0.98 9.82 16 27 N -0.54 -15.36 6.61 -181.00 -1.20 -16.56 16 28 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 29 H 0.05 1.29 8.14 -2.38 -0.02 1.27 16 30 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.06 1.79 5.80 -2.39 -0.01 1.78 16 33 H 0.05 2.46 6.33 -2.39 -0.02 2.45 16 34 H 0.10 3.70 5.90 -2.38 -0.01 3.69 16 35 H 0.04 1.87 3.98 -2.39 -0.01 1.86 16 36 H 0.01 0.61 7.72 -2.39 -0.02 0.59 16 37 H 0.26 15.92 8.31 -92.71 -0.77 15.15 16 38 H 0.07 2.17 5.71 -2.39 -0.01 2.16 16 39 H 0.09 3.11 7.76 -2.38 -0.02 3.09 16 40 H 0.15 4.98 7.97 -2.91 -0.02 4.95 16 41 H 0.18 2.81 7.34 -2.91 -0.02 2.79 16 42 H 0.20 -0.45 8.06 -2.91 -0.02 -0.47 16 43 H 0.20 -0.58 8.06 -2.91 -0.02 -0.60 16 44 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 45 H 0.11 0.50 8.09 -2.39 -0.02 0.49 16 46 H 0.07 1.09 7.50 -2.39 -0.02 1.07 16 Total: -1.00 -85.03 367.56 2.54 -82.49 By element: Atomic # 1 Polarization: 11.41 SS G_CDS: 0.93 Total: 12.34 kcal Atomic # 6 Polarization: 5.73 SS G_CDS: 7.45 Total: 13.19 kcal Atomic # 7 Polarization: -110.98 SS G_CDS: -6.51 Total: -117.48 kcal Atomic # 8 Polarization: -37.42 SS G_CDS: -1.22 Total: -38.65 kcal Atomic # 14 Polarization: 46.22 SS G_CDS: 1.89 Total: 48.11 kcal Total: -85.03 2.54 -82.49 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072690343.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.981 kcal (2) G-P(sol) polarization free energy of solvation -85.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds