Wall clock time and date at job start Tue Mar 31 2020 16:09:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42902 * 114.00025 * 2 1 4 4 C 1.52998 * 109.47322 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.47480 * 179.97438 * 4 3 2 6 6 C 1.36538 * 124.77109 * 90.02182 * 5 4 3 7 7 C 1.50710 * 125.37803 * 359.94703 * 6 5 4 8 8 C 1.34323 * 109.23956 * 179.97438 * 6 5 4 9 9 C 1.46969 * 106.38454 * 0.02562 * 8 6 5 10 10 C 1.41820 * 127.07941 * 179.73624 * 9 8 6 11 11 C 1.38175 * 120.00198 * 342.54289 * 10 9 8 12 12 C 1.43197 * 120.00197 * 173.97429 * 11 10 9 13 13 N 8.99846 * 151.03832 * 145.24863 * 3 1 2 14 14 C 1.46827 * 119.99851 * 353.96757 * 11 10 9 15 15 O 1.21710 * 119.99986 * 94.15659 * 14 11 10 16 16 N 1.34771 * 119.99834 * 274.15132 * 14 11 10 17 17 C 1.46499 * 120.00337 * 357.55686 * 16 14 11 18 18 C 1.36882 * 119.99863 * 177.55552 * 16 14 11 19 19 H 1.08006 * 119.99975 * 12.57491 * 18 16 14 20 20 C 1.39018 * 119.99939 * 192.58444 * 18 16 14 21 21 N 1.31387 * 120.00378 * 23.53699 * 20 18 16 22 22 Si 1.86802 * 119.99651 * 203.53485 * 20 18 16 23 23 H 1.48508 * 109.47052 * 94.99140 * 22 20 18 24 24 H 1.48498 * 109.47229 * 214.99173 * 22 20 18 25 25 H 1.48499 * 109.47265 * 334.99380 * 22 20 18 26 26 C 1.34583 * 124.77555 * 270.00428 * 5 4 3 27 27 C 1.50694 * 125.95943 * 0.05072 * 26 5 4 28 28 H 1.08997 * 109.46942 * 299.99931 * 1 2 3 29 29 H 1.08999 * 109.47437 * 60.00165 * 1 2 3 30 30 H 1.09002 * 109.47343 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47129 * 60.00059 * 3 2 1 32 32 H 1.09001 * 109.47200 * 300.00009 * 3 2 1 33 33 H 1.09004 * 109.47309 * 59.99665 * 4 3 2 34 34 H 1.09004 * 109.47202 * 300.00480 * 4 3 2 35 35 H 1.08993 * 109.46970 * 270.01279 * 7 6 5 36 36 H 1.09004 * 109.47131 * 30.01862 * 7 6 5 37 37 H 1.09002 * 109.46740 * 150.01379 * 7 6 5 38 38 H 1.07997 * 126.80895 * 180.02562 * 8 6 5 39 39 H 1.08002 * 119.99421 * 162.53882 * 10 9 8 40 40 H 1.08998 * 109.47090 * 95.78182 * 17 16 14 41 41 H 1.08999 * 109.47285 * 215.77544 * 17 16 14 42 42 H 1.08996 * 109.47144 * 335.77407 * 17 16 14 43 43 H 0.97002 * 119.99928 * 180.02562 * 21 20 18 44 44 H 1.08995 * 109.47630 * 269.98611 * 27 26 5 45 45 H 1.09001 * 109.47093 * 29.98898 * 27 26 5 46 46 H 1.09006 * 109.47503 * 149.98024 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 4.1313 2.5230 -0.0013 6 6 4.4490 3.2345 1.1200 7 6 4.2409 2.7676 2.5377 8 6 4.9756 4.4165 0.7598 9 6 4.9831 4.4364 -0.7098 10 6 5.4434 5.4834 -1.5484 11 6 5.6118 6.7556 -1.0361 12 6 6.1975 7.7816 -1.8453 13 7 6.6633 8.5961 -2.4837 14 6 5.1901 7.0554 0.3380 15 8 5.9928 6.9842 1.2501 16 7 3.9143 7.4096 0.5891 17 6 2.9614 7.5476 -0.5150 18 6 3.5087 7.6405 1.8759 19 1 4.2412 7.7397 2.6634 20 6 2.1540 7.7470 2.1693 21 7 1.2646 7.1926 1.3769 22 14 1.5982 8.6785 3.6901 23 1 1.2658 10.0777 3.3196 24 1 0.3971 8.0195 4.2628 25 1 2.6899 8.6791 4.6968 26 6 4.4430 3.2240 -1.1070 27 6 4.2390 2.7699 -2.5294 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.6886 1.8464 0.8900 32 1 1.6886 1.8464 -0.8900 33 1 3.8567 0.6439 -0.8908 34 1 3.8574 0.6436 0.8891 35 1 3.2522 3.0736 2.8796 36 1 4.3191 1.6811 2.5777 37 1 5.0010 3.2105 3.1813 38 1 5.3244 5.1974 1.4192 39 1 5.6624 5.2862 -2.5874 40 1 2.3962 6.6221 -0.6250 41 1 2.2763 8.3685 -0.3034 42 1 3.5025 7.7548 -1.4382 43 1 0.3194 7.2673 1.5815 44 1 5.1284 2.2420 -2.8734 45 1 3.3787 2.1024 -2.5778 46 1 4.0623 3.6370 -3.1659 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000101515414.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:09:41 Heat of formation + Delta-G solvation = 28.972209 kcal Electronic energy + Delta-G solvation = -29232.268312 eV Core-core repulsion = 25317.526959 eV Total energy + Delta-G solvation = -3914.741353 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.13345 -38.70876 -38.06879 -36.07623 -34.70793 -34.16388 -32.78203 -31.93354 -31.27066 -29.06776 -28.51441 -26.53139 -26.17895 -25.27143 -24.24481 -23.37453 -22.18199 -20.30157 -19.79466 -17.92938 -17.10218 -16.81980 -16.52006 -16.28810 -15.98745 -15.52920 -15.12101 -14.75577 -14.39928 -14.20258 -14.00234 -13.75174 -13.40212 -13.14348 -13.07933 -12.90224 -12.81621 -12.57053 -12.49849 -12.33984 -12.09548 -11.90829 -11.82565 -11.73952 -11.62864 -11.45401 -11.39831 -11.30651 -10.94752 -10.87338 -10.60757 -10.36691 -10.23966 -9.97218 -9.62118 -8.99579 -8.45234 -7.77967 -7.70618 -7.06912 -6.38592 -3.79293 1.14920 2.56895 2.85562 3.09591 3.20470 3.25859 3.31757 3.48202 3.74720 3.80075 4.03433 4.16504 4.51684 4.64045 4.74811 4.86423 5.02723 5.04930 5.09179 5.10621 5.13786 5.16226 5.26705 5.37542 5.40156 5.47092 5.49964 5.52148 5.60396 5.82775 5.92526 5.94874 6.00799 6.23987 6.35881 6.45697 6.63341 6.77590 6.82350 6.94069 6.95801 7.23845 7.44215 7.55286 7.58153 7.66952 8.03867 8.11955 8.47575 9.16971 9.42672 9.99924 10.64537 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.008841 B = 0.005072 C = 0.003770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3166.340949 B = 5519.373791 C = 7425.751776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.392 6.392 3 C 0.046 3.954 4 C 0.105 3.895 5 N -0.430 5.430 6 C -0.006 4.006 7 C -0.078 4.078 8 C -0.130 4.130 9 C -0.176 4.176 10 C 0.050 3.950 11 C -0.115 4.115 12 C 0.276 3.724 13 N -0.452 5.452 14 C 0.498 3.502 15 O -0.587 6.587 16 N -0.419 5.419 17 C 0.113 3.887 18 C -0.307 4.307 19 H 0.106 0.894 20 C 0.037 3.963 21 N -0.863 5.863 22 Si 0.916 3.084 23 H -0.278 1.278 24 H -0.286 1.286 25 H -0.267 1.267 26 C 0.063 3.937 27 C -0.088 4.088 28 H 0.045 0.955 29 H 0.043 0.957 30 H 0.087 0.913 31 H 0.062 0.938 32 H 0.058 0.942 33 H 0.094 0.906 34 H 0.097 0.903 35 H 0.069 0.931 36 H 0.054 0.946 37 H 0.080 0.920 38 H 0.180 0.820 39 H 0.125 0.875 40 H 0.062 0.938 41 H 0.065 0.935 42 H 0.028 0.972 43 H 0.266 0.734 44 H 0.074 0.926 45 H 0.064 0.936 46 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.120 -15.740 -5.168 16.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.311 6.311 3 C -0.032 4.032 4 C -0.018 4.018 5 N -0.108 5.108 6 C -0.111 4.111 7 C -0.136 4.136 8 C -0.152 4.152 9 C -0.184 4.184 10 C 0.025 3.975 11 C -0.123 4.123 12 C -0.037 4.037 13 N -0.130 5.130 14 C 0.285 3.715 15 O -0.475 6.475 16 N -0.135 5.135 17 C -0.031 4.031 18 C -0.435 4.435 19 H 0.124 0.876 20 C -0.168 4.168 21 N -0.501 5.501 22 Si 0.742 3.258 23 H -0.204 1.204 24 H -0.212 1.212 25 H -0.192 1.192 26 C -0.053 4.053 27 C -0.146 4.146 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.106 0.894 31 H 0.080 0.920 32 H 0.076 0.924 33 H 0.113 0.887 34 H 0.115 0.885 35 H 0.088 0.912 36 H 0.073 0.927 37 H 0.099 0.901 38 H 0.196 0.804 39 H 0.142 0.858 40 H 0.080 0.920 41 H 0.084 0.916 42 H 0.046 0.954 43 H 0.076 0.924 44 H 0.093 0.907 45 H 0.083 0.917 46 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -2.330 -15.015 -5.628 16.203 hybrid contribution -1.139 0.358 0.799 1.437 sum -3.469 -14.657 -4.829 15.817 Atomic orbital electron populations 1.22764 0.80224 1.02772 1.00546 1.87760 1.20371 1.27301 1.95625 1.22847 0.93219 0.85011 1.02078 1.21479 0.92097 0.82945 1.05246 1.43232 1.48116 1.13889 1.05591 1.20193 1.08624 0.94300 0.87992 1.20267 1.03192 0.99810 0.90319 1.23182 1.01286 0.96866 0.93874 1.18344 1.12197 0.94105 0.93708 1.20805 0.90285 0.89439 0.96936 1.18289 1.08528 0.90348 0.95157 1.25645 0.92726 0.92977 0.92331 1.81063 1.11303 1.09856 1.10759 1.17020 0.83864 0.84381 0.86211 1.90605 1.52733 1.58605 1.45530 1.43526 1.07296 1.55489 1.07145 1.21487 0.92009 1.02926 0.86636 1.19680 0.91832 1.46554 0.85410 0.87625 1.25212 0.95719 0.96887 0.98993 1.70126 1.01941 1.38946 1.39085 0.86077 0.78278 0.79772 0.81636 1.20442 1.21184 1.19150 1.20684 1.03628 0.92508 0.88489 1.20397 1.02001 1.02296 0.89882 0.93682 0.93818 0.89433 0.92001 0.92413 0.88732 0.88463 0.91216 0.92719 0.90112 0.80367 0.85762 0.91978 0.91643 0.95362 0.92366 0.90729 0.91710 0.89775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 11.01 101.05 1.11 1.39 16 2 O -0.39 -4.19 10.70 -35.23 -0.38 -4.57 16 3 C 0.05 0.51 6.26 37.16 0.23 0.74 16 4 C 0.10 1.12 5.73 -4.04 -0.02 1.10 16 5 N -0.43 -6.03 2.68 -107.49 -0.29 -6.32 16 6 C -0.01 -0.10 6.84 -81.87 -0.56 -0.66 16 7 C -0.08 -1.10 10.04 36.01 0.36 -0.74 16 8 C -0.13 -2.59 9.37 -37.43 -0.35 -2.94 16 9 C -0.18 -3.07 5.91 -104.88 -0.62 -3.69 16 10 C 0.05 0.83 9.35 -38.24 -0.36 0.48 16 11 C -0.12 -2.32 3.78 -104.52 -0.40 -2.72 16 12 C 0.28 5.57 15.10 -22.51 -0.34 5.23 16 13 N -0.45 -9.39 18.53 41.79 0.77 -8.62 16 14 C 0.50 12.01 4.18 -12.79 -0.05 11.96 16 15 O -0.59 -15.86 14.66 5.18 0.08 -15.78 16 16 N -0.42 -10.42 3.02 -123.64 -0.37 -10.79 16 17 C 0.11 2.55 8.61 59.85 0.52 3.06 16 18 C -0.31 -8.15 9.39 -15.01 -0.14 -8.29 16 19 H 0.11 2.96 7.32 -52.48 -0.38 2.57 16 20 C 0.04 0.92 4.91 -17.45 -0.09 0.84 16 21 N -0.86 -21.72 10.76 55.50 0.60 -21.12 16 22 Si 0.92 19.97 29.61 -169.99 -5.03 14.93 16 23 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 24 H -0.29 -6.15 7.11 56.52 0.40 -5.74 16 25 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 26 C 0.06 0.89 6.95 -81.27 -0.56 0.32 16 27 C -0.09 -0.86 9.62 36.00 0.35 -0.52 16 28 H 0.04 0.37 8.14 -51.93 -0.42 -0.06 16 29 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.09 0.84 7.49 -51.93 -0.39 0.45 16 34 H 0.10 0.96 6.88 -51.93 -0.36 0.60 16 35 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.05 0.62 6.92 -51.93 -0.36 0.26 16 37 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 38 H 0.18 4.22 4.55 -52.49 -0.24 3.98 16 39 H 0.12 1.59 7.95 -52.49 -0.42 1.17 16 40 H 0.06 1.43 7.56 -51.93 -0.39 1.04 16 41 H 0.06 1.54 6.97 -51.93 -0.36 1.18 16 42 H 0.03 0.56 6.52 -51.93 -0.34 0.22 16 43 H 0.27 6.37 8.31 -40.82 -0.34 6.03 16 44 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 45 H 0.06 0.55 7.59 -51.93 -0.39 0.16 16 46 H 0.08 0.77 7.85 -51.93 -0.41 0.36 16 LS Contribution 389.39 15.07 5.87 5.87 Total: -1.00 -31.40 389.39 -6.24 -37.63 By element: Atomic # 1 Polarization: 9.76 SS G_CDS: -6.56 Total: 3.20 kcal Atomic # 6 Polarization: 6.48 SS G_CDS: -0.92 Total: 5.56 kcal Atomic # 7 Polarization: -47.55 SS G_CDS: 0.71 Total: -46.84 kcal Atomic # 8 Polarization: -20.05 SS G_CDS: -0.30 Total: -20.35 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -5.03 Total: 14.93 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -31.40 -6.24 -37.63 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000101515414.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.607 kcal (2) G-P(sol) polarization free energy of solvation -31.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.634 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds