Wall clock time and date at job start Tue Mar 31 2020 16:09:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42902 * 114.00025 * 2 1 4 4 C 1.52998 * 109.47322 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.47480 * 179.97438 * 4 3 2 6 6 C 1.36538 * 124.77109 * 90.02182 * 5 4 3 7 7 C 1.50710 * 125.37803 * 359.94703 * 6 5 4 8 8 C 1.34323 * 109.23956 * 179.97438 * 6 5 4 9 9 C 1.46969 * 106.38454 * 0.02562 * 8 6 5 10 10 C 1.41820 * 127.07941 * 179.73624 * 9 8 6 11 11 C 1.38175 * 120.00198 * 342.54289 * 10 9 8 12 12 C 1.43197 * 120.00197 * 173.97429 * 11 10 9 13 13 N 8.99846 * 151.03832 * 145.24863 * 3 1 2 14 14 C 1.46827 * 119.99851 * 353.96757 * 11 10 9 15 15 O 1.21710 * 119.99986 * 94.15659 * 14 11 10 16 16 N 1.34771 * 119.99834 * 274.15132 * 14 11 10 17 17 C 1.46499 * 120.00337 * 357.55686 * 16 14 11 18 18 C 1.36882 * 119.99863 * 177.55552 * 16 14 11 19 19 H 1.08006 * 119.99975 * 12.57491 * 18 16 14 20 20 C 1.39018 * 119.99939 * 192.58444 * 18 16 14 21 21 N 1.31387 * 120.00378 * 23.53699 * 20 18 16 22 22 Si 1.86802 * 119.99651 * 203.53485 * 20 18 16 23 23 H 1.48508 * 109.47052 * 94.99140 * 22 20 18 24 24 H 1.48498 * 109.47229 * 214.99173 * 22 20 18 25 25 H 1.48499 * 109.47265 * 334.99380 * 22 20 18 26 26 C 1.34583 * 124.77555 * 270.00428 * 5 4 3 27 27 C 1.50694 * 125.95943 * 0.05072 * 26 5 4 28 28 H 1.08997 * 109.46942 * 299.99931 * 1 2 3 29 29 H 1.08999 * 109.47437 * 60.00165 * 1 2 3 30 30 H 1.09002 * 109.47343 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47129 * 60.00059 * 3 2 1 32 32 H 1.09001 * 109.47200 * 300.00009 * 3 2 1 33 33 H 1.09004 * 109.47309 * 59.99665 * 4 3 2 34 34 H 1.09004 * 109.47202 * 300.00480 * 4 3 2 35 35 H 1.08993 * 109.46970 * 270.01279 * 7 6 5 36 36 H 1.09004 * 109.47131 * 30.01862 * 7 6 5 37 37 H 1.09002 * 109.46740 * 150.01379 * 7 6 5 38 38 H 1.07997 * 126.80895 * 180.02562 * 8 6 5 39 39 H 1.08002 * 119.99421 * 162.53882 * 10 9 8 40 40 H 1.08998 * 109.47090 * 95.78182 * 17 16 14 41 41 H 1.08999 * 109.47285 * 215.77544 * 17 16 14 42 42 H 1.08996 * 109.47144 * 335.77407 * 17 16 14 43 43 H 0.97002 * 119.99928 * 180.02562 * 21 20 18 44 44 H 1.08995 * 109.47630 * 269.98611 * 27 26 5 45 45 H 1.09001 * 109.47093 * 29.98898 * 27 26 5 46 46 H 1.09006 * 109.47503 * 149.98024 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 4.1313 2.5230 -0.0013 6 6 4.4490 3.2345 1.1200 7 6 4.2409 2.7676 2.5377 8 6 4.9756 4.4165 0.7598 9 6 4.9831 4.4364 -0.7098 10 6 5.4434 5.4834 -1.5484 11 6 5.6118 6.7556 -1.0361 12 6 6.1975 7.7816 -1.8453 13 7 6.6633 8.5961 -2.4837 14 6 5.1901 7.0554 0.3380 15 8 5.9928 6.9842 1.2501 16 7 3.9143 7.4096 0.5891 17 6 2.9614 7.5476 -0.5150 18 6 3.5087 7.6405 1.8759 19 1 4.2412 7.7397 2.6634 20 6 2.1540 7.7470 2.1693 21 7 1.2646 7.1926 1.3769 22 14 1.5982 8.6785 3.6901 23 1 1.2658 10.0777 3.3196 24 1 0.3971 8.0195 4.2628 25 1 2.6899 8.6791 4.6968 26 6 4.4430 3.2240 -1.1070 27 6 4.2390 2.7699 -2.5294 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.6886 1.8464 0.8900 32 1 1.6886 1.8464 -0.8900 33 1 3.8567 0.6439 -0.8908 34 1 3.8574 0.6436 0.8891 35 1 3.2522 3.0736 2.8796 36 1 4.3191 1.6811 2.5777 37 1 5.0010 3.2105 3.1813 38 1 5.3244 5.1974 1.4192 39 1 5.6624 5.2862 -2.5874 40 1 2.3962 6.6221 -0.6250 41 1 2.2763 8.3685 -0.3034 42 1 3.5025 7.7548 -1.4382 43 1 0.3194 7.2673 1.5815 44 1 5.1284 2.2420 -2.8734 45 1 3.3787 2.1024 -2.5778 46 1 4.0623 3.6370 -3.1659 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000101515414.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:09:40 Heat of formation + Delta-G solvation = 10.466947 kcal Electronic energy + Delta-G solvation = -29233.070760 eV Core-core repulsion = 25317.526959 eV Total energy + Delta-G solvation = -3915.543802 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.37146 -40.45589 -38.89959 -37.65535 -36.58873 -35.51949 -33.93579 -33.58541 -32.73956 -30.07863 -29.61569 -28.20673 -27.26697 -26.71334 -25.86672 -24.39856 -23.39706 -21.96787 -21.09122 -19.26376 -18.80140 -18.44041 -17.70703 -17.20238 -17.12594 -16.83730 -16.45548 -16.30202 -15.94377 -15.44059 -15.27740 -15.21501 -14.72326 -14.57531 -14.45437 -14.09218 -14.04499 -13.88281 -13.69887 -13.58739 -13.37303 -13.31212 -13.25250 -13.12794 -12.94893 -12.64616 -12.58243 -12.50024 -12.41276 -12.26846 -12.20710 -12.13142 -12.01446 -11.01874 -10.90013 -10.76197 -10.33809 -9.68454 -9.10435 -8.37928 -8.33037 -5.81270 -0.21043 1.33156 1.36281 1.43173 1.53341 1.61793 1.77692 2.03038 2.04287 2.31295 2.59469 2.88869 3.00737 3.21345 3.43940 3.69280 3.84078 3.91468 3.94977 4.12007 4.20248 4.26953 4.34984 4.47824 4.48416 4.51780 4.55842 4.63353 4.67193 4.75704 4.81263 4.83444 4.87594 5.03438 5.06510 5.07273 5.14989 5.27499 5.37223 5.48457 5.53747 5.59664 6.01476 6.07107 6.12456 6.26636 6.46420 6.53134 6.55912 7.22640 7.52490 8.11904 8.69334 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.008841 B = 0.005072 C = 0.003770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3166.340949 B = 5519.373791 C = 7425.751776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.399 6.399 3 C 0.052 3.948 4 C 0.102 3.898 5 N -0.424 5.424 6 C -0.010 4.010 7 C -0.076 4.076 8 C -0.174 4.174 9 C -0.225 4.225 10 C 0.101 3.899 11 C -0.172 4.172 12 C 0.291 3.709 13 N -0.476 5.476 14 C 0.505 3.495 15 O -0.631 6.631 16 N -0.433 5.433 17 C 0.130 3.870 18 C -0.340 4.340 19 H 0.075 0.925 20 C 0.011 3.989 21 N -0.874 5.874 22 Si 0.974 3.026 23 H -0.272 1.272 24 H -0.273 1.273 25 H -0.275 1.275 26 C 0.106 3.894 27 C -0.093 4.093 28 H 0.041 0.959 29 H 0.050 0.950 30 H 0.108 0.892 31 H 0.040 0.960 32 H 0.059 0.941 33 H 0.126 0.874 34 H 0.108 0.892 35 H 0.060 0.940 36 H 0.088 0.912 37 H 0.070 0.930 38 H 0.133 0.867 39 H 0.175 0.825 40 H 0.053 0.947 41 H 0.049 0.951 42 H 0.052 0.948 43 H 0.272 0.728 44 H 0.105 0.895 45 H 0.085 0.915 46 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.500 -18.901 -7.460 20.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.317 6.317 3 C -0.025 4.025 4 C -0.019 4.019 5 N -0.101 5.101 6 C -0.116 4.116 7 C -0.133 4.133 8 C -0.196 4.196 9 C -0.232 4.232 10 C 0.078 3.922 11 C -0.181 4.181 12 C -0.021 4.021 13 N -0.154 5.154 14 C 0.294 3.706 15 O -0.520 6.520 16 N -0.148 5.148 17 C -0.013 4.013 18 C -0.467 4.467 19 H 0.093 0.907 20 C -0.193 4.193 21 N -0.511 5.511 22 Si 0.798 3.202 23 H -0.198 1.198 24 H -0.198 1.198 25 H -0.200 1.200 26 C -0.013 4.013 27 C -0.150 4.150 28 H 0.059 0.941 29 H 0.069 0.931 30 H 0.126 0.874 31 H 0.059 0.941 32 H 0.077 0.923 33 H 0.144 0.856 34 H 0.127 0.873 35 H 0.078 0.922 36 H 0.107 0.893 37 H 0.089 0.911 38 H 0.150 0.850 39 H 0.192 0.808 40 H 0.071 0.929 41 H 0.068 0.932 42 H 0.070 0.930 43 H 0.082 0.918 44 H 0.123 0.877 45 H 0.104 0.896 46 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -3.737 -18.192 -7.929 20.193 hybrid contribution -0.780 1.016 1.554 2.014 sum -4.516 -17.176 -6.374 18.869 Atomic orbital electron populations 1.22960 0.79027 1.04249 1.00718 1.87744 1.21657 1.26689 1.95624 1.22691 0.93437 0.85260 1.01149 1.21766 0.91691 0.80971 1.07435 1.43469 1.46992 1.14882 1.04720 1.20332 1.07656 0.93889 0.89692 1.20274 1.02222 1.01867 0.88949 1.22896 1.03868 0.97451 0.95406 1.18550 1.15710 0.96269 0.92656 1.21301 0.84948 0.87346 0.98628 1.17773 1.14332 0.92110 0.93844 1.25506 0.91989 0.92610 0.91951 1.81060 1.12850 1.09865 1.11621 1.17538 0.83046 0.82378 0.87608 1.90552 1.53857 1.59821 1.47818 1.43650 1.08069 1.56059 1.06999 1.21315 0.91427 1.01674 0.86907 1.19507 0.92022 1.49171 0.86040 0.90732 1.25805 0.95124 0.96829 1.01564 1.70160 1.02223 1.38712 1.40052 0.85223 0.77740 0.78764 0.78484 1.19805 1.19806 1.20028 1.21448 0.98795 0.90442 0.90580 1.20704 1.04343 1.03716 0.86212 0.94070 0.93121 0.87382 0.94126 0.92293 0.85598 0.87345 0.92165 0.89318 0.91083 0.84957 0.80799 0.92852 0.93241 0.92976 0.91789 0.87661 0.89586 0.88338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 11.01 113.37 1.25 1.61 16 2 O -0.40 -7.22 10.70 -148.98 -1.59 -8.82 16 3 C 0.05 1.00 6.26 71.98 0.45 1.45 16 4 C 0.10 1.78 5.73 86.38 0.49 2.27 16 5 N -0.42 -10.76 2.68 -494.00 -1.33 -12.08 16 6 C -0.01 -0.33 6.84 40.93 0.28 -0.05 16 7 C -0.08 -2.16 10.04 71.24 0.72 -1.44 16 8 C -0.17 -7.19 9.37 23.66 0.22 -6.97 16 9 C -0.23 -7.60 5.91 -20.03 -0.12 -7.72 16 10 C 0.10 3.24 9.35 23.14 0.22 3.46 16 11 C -0.17 -7.06 3.78 -19.80 -0.07 -7.14 16 12 C 0.29 11.84 15.10 88.34 1.33 13.18 16 13 N -0.48 -19.84 18.53 18.99 0.35 -19.49 16 14 C 0.51 25.82 4.18 86.49 0.36 26.18 16 15 O -0.63 -36.95 14.66 -4.38 -0.06 -37.01 16 16 N -0.43 -22.64 3.02 -663.29 -2.00 -24.64 16 17 C 0.13 6.00 8.61 127.77 1.10 7.10 16 18 C -0.34 -19.16 9.39 84.09 0.79 -18.37 16 19 H 0.07 4.56 7.32 -2.91 -0.02 4.54 16 20 C 0.01 0.55 4.91 84.95 0.42 0.97 16 21 N -0.87 -44.67 10.76 21.68 0.23 -44.44 16 22 Si 0.97 42.00 29.61 68.60 2.03 44.04 16 23 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 24 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 25 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 26 C 0.11 2.64 6.95 42.21 0.29 2.93 16 27 C -0.09 -1.26 9.62 71.23 0.69 -0.57 16 28 H 0.04 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.13 1.50 7.49 -2.39 -0.02 1.49 16 34 H 0.11 1.71 6.88 -2.39 -0.02 1.69 16 35 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 36 H 0.09 1.85 6.92 -2.38 -0.02 1.84 16 37 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 38 H 0.13 6.85 4.55 -2.91 -0.01 6.83 16 39 H 0.17 3.69 7.95 -2.91 -0.02 3.67 16 40 H 0.05 2.50 7.56 -2.39 -0.02 2.48 16 41 H 0.05 2.38 6.97 -2.39 -0.02 2.36 16 42 H 0.05 2.11 6.52 -2.39 -0.02 2.09 16 43 H 0.27 13.01 8.31 -92.71 -0.77 12.24 16 44 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 45 H 0.09 0.90 7.59 -2.39 -0.02 0.88 16 46 H 0.10 1.18 7.85 -2.38 -0.02 1.16 16 Total: -1.00 -74.88 389.39 7.04 -67.84 By element: Atomic # 1 Polarization: 16.70 SS G_CDS: 1.00 Total: 17.70 kcal Atomic # 6 Polarization: 8.49 SS G_CDS: 8.42 Total: 16.90 kcal Atomic # 7 Polarization: -97.91 SS G_CDS: -2.74 Total: -100.65 kcal Atomic # 8 Polarization: -44.17 SS G_CDS: -1.66 Total: -45.83 kcal Atomic # 14 Polarization: 42.00 SS G_CDS: 2.03 Total: 44.04 kcal Total: -74.88 7.04 -67.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000101515414.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.307 kcal (2) G-P(sol) polarization free energy of solvation -74.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.840 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds