Wall clock time and date at job start Tue Mar 31 2020 16:11:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42904 * 114.00000 * 2 1 4 4 C 1.52989 * 109.47377 * 179.97438 * 3 2 1 5 5 H 1.09003 * 109.47041 * 55.10995 * 4 3 2 6 6 C 1.53009 * 109.47241 * 295.11617 * 4 3 2 7 7 N 1.46498 * 109.47417 * 175.11496 * 4 3 2 8 8 C 1.36538 * 124.77214 * 68.43786 * 7 4 3 9 9 C 1.50697 * 125.38238 * 0.03942 * 8 7 4 10 10 C 1.34329 * 109.23902 * 179.97438 * 8 7 4 11 11 C 1.46975 * 106.38430 * 0.02562 * 10 8 7 12 12 C 1.41814 * 127.07989 * 179.97438 * 11 10 8 13 13 C 1.38173 * 120.00213 * 41.68015 * 12 11 10 14 14 C 1.43204 * 120.00131 * 188.76997 * 13 12 11 15 15 N 9.22838 * 158.19878 * 126.38901 * 3 1 2 16 16 C 1.46827 * 120.00266 * 8.76088 * 13 12 11 17 17 O 1.21723 * 119.99240 * 7.59402 * 16 13 12 18 18 N 1.34767 * 120.00262 * 187.58916 * 16 13 12 19 19 C 1.36879 * 120.00131 * 179.97438 * 18 16 13 20 20 H 1.08006 * 119.99803 * 0.02562 * 19 18 16 21 21 C 1.39014 * 120.00298 * 180.02562 * 19 18 16 22 22 N 1.31390 * 119.99985 * 0.02562 * 21 19 18 23 23 Si 1.86804 * 120.00082 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47149 * 359.97438 * 23 21 19 25 25 H 1.48496 * 109.47253 * 119.99676 * 23 21 19 26 26 H 1.48497 * 109.46955 * 239.99682 * 23 21 19 27 27 C 1.34593 * 124.77591 * 248.13254 * 7 4 3 28 28 C 1.50706 * 125.95365 * 0.02562 * 27 7 4 29 29 H 1.09000 * 109.46970 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47629 * 300.00726 * 1 2 3 31 31 H 1.08998 * 109.46912 * 60.00381 * 1 2 3 32 32 H 1.08998 * 109.47162 * 59.99292 * 3 2 1 33 33 H 1.09001 * 109.47140 * 299.99638 * 3 2 1 34 34 H 1.09000 * 109.46979 * 299.99977 * 6 4 3 35 35 H 1.09003 * 109.46724 * 59.99454 * 6 4 3 36 36 H 1.08997 * 109.47184 * 179.97438 * 6 4 3 37 37 H 1.08991 * 109.47597 * 95.10916 * 9 8 7 38 38 H 1.09000 * 109.47179 * 215.11658 * 9 8 7 39 39 H 1.09005 * 109.46988 * 335.11046 * 9 8 7 40 40 H 1.07995 * 126.80724 * 179.97438 * 10 8 7 41 41 H 1.07997 * 119.99929 * 221.67393 * 12 11 10 42 42 H 0.96999 * 120.00153 * 0.02562 * 18 16 13 43 43 H 0.96998 * 120.00317 * 180.02562 * 22 21 19 44 44 H 1.08997 * 109.47150 * 89.99342 * 28 27 7 45 45 H 1.08993 * 109.47098 * 209.99622 * 28 27 7 46 46 H 1.09006 * 109.46801 * 329.99249 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 1 3.8515 0.5699 -0.8421 6 6 3.9950 0.5344 1.3071 7 7 4.1309 2.5181 -0.1170 8 6 4.0775 3.4827 0.8479 9 6 3.4026 3.3402 2.1877 10 6 4.7227 4.5783 0.4147 11 6 5.2162 4.2629 -0.9334 12 6 5.9576 5.1129 -1.7930 13 6 6.9738 5.8968 -1.2812 14 6 7.5964 6.8894 -2.1046 15 7 8.0888 7.6774 -2.7590 16 6 7.4153 5.7123 0.1069 17 8 6.9861 4.7815 0.7634 18 7 8.2958 6.5735 0.6541 19 6 8.7070 6.4018 1.9484 20 1 8.3261 5.5759 2.5309 21 6 9.6148 7.2903 2.5130 22 7 10.0779 8.2953 1.8045 23 14 10.1765 7.0555 4.2791 24 1 9.5121 5.8587 4.8548 25 1 11.6491 6.8672 4.3093 26 1 9.8142 8.2542 5.0772 27 6 4.8127 2.9625 -1.1890 28 6 5.0858 2.1828 -2.4494 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.6885 1.8464 0.8899 33 1 1.6887 1.8464 -0.8900 34 1 3.6788 1.1491 2.1499 35 1 3.5518 -0.4577 1.3946 36 1 5.0815 0.4479 1.3074 37 1 4.1369 3.0377 2.9342 38 1 2.9630 4.2949 2.4765 39 1 2.6195 2.5848 2.1216 40 1 4.8524 5.5070 0.9504 41 1 5.7281 5.1473 -2.8477 42 1 8.6377 7.3154 0.1311 43 1 10.7116 8.9151 2.1983 44 1 4.2779 2.3493 -3.1619 45 1 6.0284 2.5145 -2.8848 46 1 5.1487 1.1205 -2.2131 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000126783396.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:11:02 Heat of formation + Delta-G solvation = 19.021041 kcal Electronic energy + Delta-G solvation = -28460.885927 eV Core-core repulsion = 24545.713058 eV Total energy + Delta-G solvation = -3915.172868 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.18927 -38.54428 -38.13589 -35.95415 -35.01936 -33.90274 -32.83027 -32.09910 -31.27082 -29.28954 -28.57138 -27.67201 -25.99563 -25.53486 -24.42797 -22.84744 -21.78270 -20.45941 -19.08086 -18.38699 -17.82377 -17.18921 -16.65500 -16.32866 -16.04709 -15.43305 -14.83841 -14.70009 -14.23671 -14.03757 -13.86350 -13.78394 -13.46832 -13.30234 -13.12111 -13.00151 -12.90777 -12.86608 -12.50244 -12.33175 -12.26492 -12.05216 -11.91528 -11.84200 -11.81563 -11.57305 -11.55233 -11.34000 -11.13875 -11.06030 -10.73317 -10.37076 -10.27027 -10.01151 -9.57654 -9.28540 -8.40217 -8.02875 -7.34575 -7.04764 -6.49186 -3.80419 1.12020 2.63090 2.80369 3.15260 3.23562 3.25492 3.31203 3.45472 3.71527 3.79235 4.13037 4.39756 4.50697 4.62986 4.64188 4.83842 4.91165 4.94602 4.97961 5.01982 5.12089 5.19134 5.25633 5.28380 5.34980 5.38441 5.51875 5.56094 5.61718 5.66061 5.76226 5.80275 5.94092 6.00375 6.03727 6.21245 6.27454 6.53288 6.53629 6.70274 6.85218 6.94055 7.47464 7.48045 7.65712 7.75487 8.02633 8.07425 8.57945 9.13027 9.50475 10.07553 10.67397 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.013972 B = 0.003270 C = 0.002783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2003.473628 B = 8560.013088 C =10059.753487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.388 6.388 3 C 0.050 3.950 4 C 0.135 3.865 5 H 0.101 0.899 6 C -0.168 4.168 7 N -0.432 5.432 8 C -0.023 4.023 9 C -0.081 4.081 10 C -0.067 4.067 11 C -0.155 4.155 12 C 0.053 3.947 13 C -0.116 4.116 14 C 0.259 3.741 15 N -0.441 5.441 16 C 0.478 3.522 17 O -0.564 6.564 18 N -0.547 5.547 19 C -0.287 4.287 20 H 0.110 0.890 21 C 0.020 3.980 22 N -0.887 5.887 23 Si 0.932 3.068 24 H -0.266 1.266 25 H -0.281 1.281 26 H -0.280 1.280 27 C 0.056 3.944 28 C -0.086 4.086 29 H 0.087 0.913 30 H 0.042 0.958 31 H 0.042 0.958 32 H 0.062 0.938 33 H 0.055 0.945 34 H 0.074 0.926 35 H 0.076 0.924 36 H 0.066 0.934 37 H 0.068 0.932 38 H 0.072 0.928 39 H 0.057 0.943 40 H 0.138 0.862 41 H 0.122 0.878 42 H 0.391 0.609 43 H 0.274 0.726 44 H 0.070 0.930 45 H 0.081 0.919 46 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.024 -14.840 -4.022 23.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.306 6.306 3 C -0.027 4.027 4 C 0.032 3.968 5 H 0.119 0.881 6 C -0.225 4.225 7 N -0.112 5.112 8 C -0.127 4.127 9 C -0.138 4.138 10 C -0.090 4.090 11 C -0.162 4.162 12 C 0.026 3.974 13 C -0.124 4.124 14 C -0.055 4.055 15 N -0.118 5.118 16 C 0.265 3.735 17 O -0.449 6.449 18 N -0.180 5.180 19 C -0.417 4.417 20 H 0.128 0.872 21 C -0.183 4.183 22 N -0.527 5.527 23 Si 0.759 3.241 24 H -0.190 1.190 25 H -0.207 1.207 26 H -0.206 1.206 27 C -0.059 4.059 28 C -0.144 4.144 29 H 0.106 0.894 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.080 0.920 33 H 0.074 0.926 34 H 0.092 0.908 35 H 0.094 0.906 36 H 0.085 0.915 37 H 0.087 0.913 38 H 0.090 0.910 39 H 0.075 0.925 40 H 0.155 0.845 41 H 0.140 0.860 42 H 0.225 0.775 43 H 0.084 0.916 44 H 0.088 0.912 45 H 0.100 0.900 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -17.402 -14.538 -4.394 23.097 hybrid contribution 0.429 0.470 0.776 1.004 sum -16.973 -14.068 -3.618 22.340 Atomic orbital electron populations 1.22758 0.80529 1.02866 1.00212 1.87811 1.20021 1.27246 1.95515 1.22955 0.93191 0.85031 1.01562 1.21038 0.91403 0.83023 1.01348 0.88056 1.22299 1.02503 1.01419 0.96320 1.43137 1.43352 1.11092 1.13604 1.19788 1.10154 0.89853 0.92940 1.20447 0.98990 1.02099 0.92264 1.21576 0.96532 0.98039 0.92869 1.18099 1.07438 0.93849 0.96845 1.20779 0.88914 0.90537 0.97137 1.18691 1.00203 0.98707 0.94764 1.26023 0.93179 0.93211 0.93043 1.81180 1.09483 1.10978 1.10167 1.17116 0.84890 0.86087 0.85392 1.90725 1.59325 1.32972 1.61883 1.42032 1.37652 1.25182 1.13182 1.19861 1.21954 1.11831 0.88036 0.87192 1.25413 0.96903 0.95452 1.00568 1.69642 1.30837 1.14627 1.37587 0.85752 0.78415 0.78528 0.81402 1.18970 1.20662 1.20631 1.20529 1.00164 0.94734 0.90430 1.20359 1.02772 0.98583 0.92661 0.89407 0.93897 0.93962 0.91958 0.92632 0.90760 0.90558 0.91499 0.91289 0.90956 0.92452 0.84469 0.86043 0.77540 0.91556 0.91166 0.89967 0.91887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 101.05 1.11 1.32 16 2 O -0.39 -3.54 10.23 -35.23 -0.36 -3.90 16 3 C 0.05 0.46 5.37 37.15 0.20 0.66 16 4 C 0.14 1.43 3.00 -67.93 -0.20 1.22 16 5 H 0.10 0.99 6.44 -51.93 -0.33 0.66 16 6 C -0.17 -1.74 8.91 37.16 0.33 -1.41 16 7 N -0.43 -5.80 2.57 -100.48 -0.26 -6.06 16 8 C -0.02 -0.34 6.38 -81.88 -0.52 -0.86 16 9 C -0.08 -0.98 8.46 36.00 0.30 -0.67 16 10 C -0.07 -1.19 7.68 -37.42 -0.29 -1.47 16 11 C -0.15 -2.57 4.81 -104.88 -0.50 -3.08 16 12 C 0.05 0.86 9.32 -38.24 -0.36 0.50 16 13 C -0.12 -2.25 5.87 -104.52 -0.61 -2.87 16 14 C 0.26 5.15 14.21 -22.45 -0.32 4.83 16 15 N -0.44 -9.26 18.54 41.86 0.78 -8.48 16 16 C 0.48 11.27 7.19 -12.79 -0.09 11.18 16 17 O -0.56 -14.03 11.48 5.17 0.06 -13.97 16 18 N -0.55 -14.21 5.23 -12.13 -0.06 -14.28 16 19 C -0.29 -7.86 9.68 -15.01 -0.15 -8.00 16 20 H 0.11 3.08 7.15 -52.48 -0.38 2.70 16 21 C 0.02 0.53 5.50 -17.45 -0.10 0.44 16 22 N -0.89 -24.63 13.05 55.50 0.72 -23.91 16 23 Si 0.93 20.73 29.55 -169.99 -5.02 15.71 16 24 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 25 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 26 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 27 C 0.06 0.79 6.95 -81.27 -0.56 0.22 16 28 C -0.09 -0.89 9.77 36.01 0.35 -0.54 16 29 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.04 0.24 8.14 -51.93 -0.42 -0.19 16 31 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 32 H 0.06 0.57 5.72 -51.93 -0.30 0.27 16 33 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.07 0.77 4.71 -51.93 -0.24 0.53 16 35 H 0.08 0.69 7.82 -51.93 -0.41 0.29 16 36 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 37 H 0.07 0.88 7.92 -51.93 -0.41 0.47 16 38 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.06 0.57 4.20 -51.93 -0.22 0.35 16 40 H 0.14 2.67 7.49 -52.49 -0.39 2.28 16 41 H 0.12 1.52 8.06 -52.49 -0.42 1.10 16 42 H 0.39 10.33 6.80 -40.82 -0.28 10.06 16 43 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 44 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 45 H 0.08 0.84 7.96 -51.93 -0.41 0.42 16 46 H 0.06 0.57 6.86 -51.93 -0.36 0.22 16 LS Contribution 382.50 15.07 5.76 5.76 Total: -1.00 -31.80 382.50 -6.03 -37.83 By element: Atomic # 1 Polarization: 16.06 SS G_CDS: -6.24 Total: 9.82 kcal Atomic # 6 Polarization: 2.88 SS G_CDS: -1.41 Total: 1.47 kcal Atomic # 7 Polarization: -53.90 SS G_CDS: 1.18 Total: -52.72 kcal Atomic # 8 Polarization: -17.57 SS G_CDS: -0.30 Total: -17.87 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -31.80 -6.03 -37.83 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126783396.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.855 kcal (2) G-P(sol) polarization free energy of solvation -31.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.834 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds