Wall clock time and date at job start Tue Mar 31 2020 16:11:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42904 * 114.00000 * 2 1 4 4 C 1.52989 * 109.47377 * 179.97438 * 3 2 1 5 5 H 1.09003 * 109.47041 * 55.10995 * 4 3 2 6 6 C 1.53009 * 109.47241 * 295.11617 * 4 3 2 7 7 N 1.46498 * 109.47417 * 175.11496 * 4 3 2 8 8 C 1.36538 * 124.77214 * 68.43786 * 7 4 3 9 9 C 1.50697 * 125.38238 * 0.03942 * 8 7 4 10 10 C 1.34329 * 109.23902 * 179.97438 * 8 7 4 11 11 C 1.46975 * 106.38430 * 0.02562 * 10 8 7 12 12 C 1.41814 * 127.07989 * 179.97438 * 11 10 8 13 13 C 1.38173 * 120.00213 * 41.68015 * 12 11 10 14 14 C 1.43204 * 120.00131 * 188.76997 * 13 12 11 15 15 N 9.22838 * 158.19878 * 126.38901 * 3 1 2 16 16 C 1.46827 * 120.00266 * 8.76088 * 13 12 11 17 17 O 1.21723 * 119.99240 * 7.59402 * 16 13 12 18 18 N 1.34767 * 120.00262 * 187.58916 * 16 13 12 19 19 C 1.36879 * 120.00131 * 179.97438 * 18 16 13 20 20 H 1.08006 * 119.99803 * 0.02562 * 19 18 16 21 21 C 1.39014 * 120.00298 * 180.02562 * 19 18 16 22 22 N 1.31390 * 119.99985 * 0.02562 * 21 19 18 23 23 Si 1.86804 * 120.00082 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47149 * 359.97438 * 23 21 19 25 25 H 1.48496 * 109.47253 * 119.99676 * 23 21 19 26 26 H 1.48497 * 109.46955 * 239.99682 * 23 21 19 27 27 C 1.34593 * 124.77591 * 248.13254 * 7 4 3 28 28 C 1.50706 * 125.95365 * 0.02562 * 27 7 4 29 29 H 1.09000 * 109.46970 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47629 * 300.00726 * 1 2 3 31 31 H 1.08998 * 109.46912 * 60.00381 * 1 2 3 32 32 H 1.08998 * 109.47162 * 59.99292 * 3 2 1 33 33 H 1.09001 * 109.47140 * 299.99638 * 3 2 1 34 34 H 1.09000 * 109.46979 * 299.99977 * 6 4 3 35 35 H 1.09003 * 109.46724 * 59.99454 * 6 4 3 36 36 H 1.08997 * 109.47184 * 179.97438 * 6 4 3 37 37 H 1.08991 * 109.47597 * 95.10916 * 9 8 7 38 38 H 1.09000 * 109.47179 * 215.11658 * 9 8 7 39 39 H 1.09005 * 109.46988 * 335.11046 * 9 8 7 40 40 H 1.07995 * 126.80724 * 179.97438 * 10 8 7 41 41 H 1.07997 * 119.99929 * 221.67393 * 12 11 10 42 42 H 0.96999 * 120.00153 * 0.02562 * 18 16 13 43 43 H 0.96998 * 120.00317 * 180.02562 * 22 21 19 44 44 H 1.08997 * 109.47150 * 89.99342 * 28 27 7 45 45 H 1.08993 * 109.47098 * 209.99622 * 28 27 7 46 46 H 1.09006 * 109.46801 * 329.99249 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 1 3.8515 0.5699 -0.8421 6 6 3.9950 0.5344 1.3071 7 7 4.1309 2.5181 -0.1170 8 6 4.0775 3.4827 0.8479 9 6 3.4026 3.3402 2.1877 10 6 4.7227 4.5783 0.4147 11 6 5.2162 4.2629 -0.9334 12 6 5.9576 5.1129 -1.7930 13 6 6.9738 5.8968 -1.2812 14 6 7.5964 6.8894 -2.1046 15 7 8.0888 7.6774 -2.7590 16 6 7.4153 5.7123 0.1069 17 8 6.9861 4.7815 0.7634 18 7 8.2958 6.5735 0.6541 19 6 8.7070 6.4018 1.9484 20 1 8.3261 5.5759 2.5309 21 6 9.6148 7.2903 2.5130 22 7 10.0779 8.2953 1.8045 23 14 10.1765 7.0555 4.2791 24 1 9.5121 5.8587 4.8548 25 1 11.6491 6.8672 4.3093 26 1 9.8142 8.2542 5.0772 27 6 4.8127 2.9625 -1.1890 28 6 5.0858 2.1828 -2.4494 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.6885 1.8464 0.8899 33 1 1.6887 1.8464 -0.8900 34 1 3.6788 1.1491 2.1499 35 1 3.5518 -0.4577 1.3946 36 1 5.0815 0.4479 1.3074 37 1 4.1369 3.0377 2.9342 38 1 2.9630 4.2949 2.4765 39 1 2.6195 2.5848 2.1216 40 1 4.8524 5.5070 0.9504 41 1 5.7281 5.1473 -2.8477 42 1 8.6377 7.3154 0.1311 43 1 10.7116 8.9151 2.1983 44 1 4.2779 2.3493 -3.1619 45 1 6.0284 2.5145 -2.8848 46 1 5.1487 1.1205 -2.2131 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000126783396.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:11:01 Heat of formation + Delta-G solvation = -0.674401 kcal Electronic energy + Delta-G solvation = -28461.739985 eV Core-core repulsion = 24545.713058 eV Total energy + Delta-G solvation = -3916.026927 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.36546 -40.19959 -38.96908 -37.57030 -36.38533 -35.50548 -34.04947 -33.36404 -33.19498 -30.35435 -29.68571 -28.35172 -27.41830 -26.49180 -25.88558 -24.04706 -22.87172 -22.14024 -20.36954 -20.06119 -19.26217 -18.78096 -17.52494 -17.11711 -16.90544 -16.71223 -16.38129 -15.97627 -15.73719 -15.46169 -15.30378 -15.12624 -14.64618 -14.50066 -14.36850 -14.18912 -14.01378 -13.86267 -13.75262 -13.64183 -13.59403 -13.41877 -13.24180 -12.93344 -12.87217 -12.76658 -12.74641 -12.50381 -12.38570 -12.35429 -12.09888 -12.02132 -11.62065 -11.46402 -10.74267 -10.64922 -10.14387 -9.98951 -8.70161 -8.46691 -8.37586 -5.89660 -0.27004 1.37214 1.41044 1.46501 1.56782 1.68307 1.83601 1.90931 2.29802 2.30697 2.76866 2.95123 3.11608 3.35246 3.40611 3.60124 3.83989 3.94364 4.05113 4.06654 4.21366 4.31999 4.41890 4.45937 4.53636 4.57487 4.60062 4.67361 4.73622 4.77958 4.83130 4.83732 4.89163 4.92884 5.03775 5.11566 5.15580 5.22462 5.28986 5.42076 5.52764 5.60926 6.03950 6.09738 6.16948 6.41307 6.53435 6.60359 6.62097 7.14385 7.57501 8.15148 8.72727 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.013972 B = 0.003270 C = 0.002783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2003.473628 B = 8560.013088 C =10059.753487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.400 6.400 3 C 0.058 3.942 4 C 0.130 3.870 5 H 0.118 0.882 6 C -0.166 4.166 7 N -0.427 5.427 8 C -0.019 4.019 9 C -0.080 4.080 10 C -0.103 4.103 11 C -0.209 4.209 12 C 0.125 3.875 13 C -0.170 4.170 14 C 0.277 3.723 15 N -0.471 5.471 16 C 0.493 3.507 17 O -0.578 6.578 18 N -0.576 5.576 19 C -0.316 4.316 20 H 0.093 0.907 21 C -0.024 4.024 22 N -0.928 5.928 23 Si 0.999 3.001 24 H -0.264 1.264 25 H -0.275 1.275 26 H -0.273 1.273 27 C 0.088 3.912 28 C -0.091 4.091 29 H 0.102 0.898 30 H 0.049 0.951 31 H 0.049 0.951 32 H 0.063 0.937 33 H 0.059 0.941 34 H 0.071 0.929 35 H 0.092 0.908 36 H 0.050 0.950 37 H 0.061 0.939 38 H 0.077 0.923 39 H 0.084 0.916 40 H 0.105 0.895 41 H 0.170 0.830 42 H 0.384 0.616 43 H 0.276 0.724 44 H 0.102 0.898 45 H 0.087 0.913 46 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.649 -18.027 -5.237 27.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.319 6.319 3 C -0.020 4.020 4 C 0.028 3.972 5 H 0.136 0.864 6 C -0.223 4.223 7 N -0.105 5.105 8 C -0.124 4.124 9 C -0.137 4.137 10 C -0.126 4.126 11 C -0.216 4.216 12 C 0.099 3.901 13 C -0.178 4.178 14 C -0.035 4.035 15 N -0.149 5.149 16 C 0.282 3.718 17 O -0.464 6.464 18 N -0.211 5.211 19 C -0.446 4.446 20 H 0.111 0.889 21 C -0.223 4.223 22 N -0.570 5.570 23 Si 0.822 3.178 24 H -0.188 1.188 25 H -0.200 1.200 26 H -0.198 1.198 27 C -0.029 4.029 28 C -0.148 4.148 29 H 0.120 0.880 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.081 0.919 33 H 0.078 0.922 34 H 0.090 0.910 35 H 0.111 0.889 36 H 0.069 0.931 37 H 0.080 0.920 38 H 0.095 0.905 39 H 0.102 0.898 40 H 0.124 0.876 41 H 0.187 0.813 42 H 0.217 0.783 43 H 0.085 0.915 44 H 0.120 0.880 45 H 0.106 0.894 46 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -20.076 -17.766 -5.616 27.390 hybrid contribution 0.801 1.060 1.021 1.676 sum -19.275 -16.706 -4.595 25.918 Atomic orbital electron populations 1.22958 0.78995 1.04120 1.00911 1.87786 1.21638 1.26819 1.95622 1.22783 0.91926 0.85436 1.01818 1.21303 0.92498 0.81244 1.02111 0.86412 1.22277 1.01526 1.02322 0.96158 1.43442 1.42364 1.11841 1.12880 1.20076 1.09073 0.89314 0.93948 1.20511 0.99349 1.03351 0.90470 1.21467 0.99055 0.98155 0.93958 1.18349 1.10128 0.95980 0.97188 1.21388 0.84190 0.85448 0.99057 1.18220 1.03854 1.02595 0.93099 1.25920 0.92447 0.92601 0.92518 1.81180 1.10474 1.11933 1.11323 1.17728 0.82818 0.84618 0.86646 1.90702 1.59294 1.33289 1.63077 1.42063 1.39707 1.26241 1.13065 1.19810 1.23456 1.12215 0.89090 0.88913 1.26226 0.96686 0.94955 1.04442 1.69739 1.32181 1.15797 1.39264 0.84780 0.77948 0.78507 0.76567 1.18790 1.20028 1.19835 1.21186 0.96592 0.93844 0.91301 1.20608 1.04255 0.98972 0.90968 0.87983 0.93264 0.93208 0.91904 0.92242 0.90996 0.88889 0.93084 0.92034 0.90454 0.89766 0.87647 0.81269 0.78304 0.91484 0.87957 0.89401 0.90101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 11.01 113.37 1.25 1.48 16 2 O -0.40 -5.77 10.23 -148.98 -1.52 -7.30 16 3 C 0.06 0.85 5.37 71.98 0.39 1.24 16 4 C 0.13 2.27 3.00 44.99 0.14 2.41 16 5 H 0.12 1.74 6.44 -2.39 -0.02 1.72 16 6 C -0.17 -2.96 8.91 71.99 0.64 -2.32 16 7 N -0.43 -10.26 2.57 -471.82 -1.21 -11.47 16 8 C -0.02 -0.54 6.38 40.93 0.26 -0.28 16 9 C -0.08 -1.84 8.46 71.23 0.60 -1.24 16 10 C -0.10 -3.69 7.68 23.67 0.18 -3.51 16 11 C -0.21 -6.61 4.81 -20.03 -0.10 -6.70 16 12 C 0.12 3.76 9.32 23.14 0.22 3.98 16 13 C -0.17 -6.66 5.87 -19.80 -0.12 -6.78 16 14 C 0.28 11.21 14.21 88.33 1.25 12.47 16 15 N -0.47 -20.16 18.54 19.01 0.35 -19.81 16 16 C 0.49 24.29 7.19 86.49 0.62 24.91 16 17 O -0.58 -29.88 11.48 -4.42 -0.05 -29.93 16 18 N -0.58 -31.75 5.23 -310.49 -1.62 -33.38 16 19 C -0.32 -18.35 9.68 84.09 0.81 -17.54 16 20 H 0.09 5.53 7.15 -2.91 -0.02 5.51 16 21 C -0.02 -1.36 5.50 84.95 0.47 -0.89 16 22 N -0.93 -54.08 13.05 21.68 0.28 -53.79 16 23 Si 1.00 44.20 29.55 68.60 2.03 46.23 16 24 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 25 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 26 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 27 C 0.09 2.18 6.95 42.21 0.29 2.47 16 28 C -0.09 -1.39 9.77 71.24 0.70 -0.70 16 29 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.05 0.39 8.14 -2.39 -0.02 0.37 16 31 H 0.05 0.38 8.14 -2.39 -0.02 0.36 16 32 H 0.06 0.92 5.72 -2.39 -0.01 0.91 16 33 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.07 1.32 4.71 -2.39 -0.01 1.31 16 35 H 0.09 1.38 7.82 -2.39 -0.02 1.36 16 36 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 37 H 0.06 1.54 7.92 -2.39 -0.02 1.52 16 38 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 39 H 0.08 1.46 4.20 -2.38 -0.01 1.45 16 40 H 0.11 4.40 7.49 -2.91 -0.02 4.37 16 41 H 0.17 3.46 8.06 -2.91 -0.02 3.44 16 42 H 0.38 21.71 6.80 -92.71 -0.63 21.08 16 43 H 0.28 15.01 8.31 -92.71 -0.77 14.24 16 44 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 45 H 0.09 1.34 7.96 -2.39 -0.02 1.32 16 46 H 0.08 1.02 6.86 -2.38 -0.02 1.01 16 Total: -1.00 -74.20 382.50 6.26 -67.95 By element: Atomic # 1 Polarization: 32.10 SS G_CDS: 0.40 Total: 32.50 kcal Atomic # 6 Polarization: 1.40 SS G_CDS: 7.61 Total: 9.01 kcal Atomic # 7 Polarization: -116.25 SS G_CDS: -2.20 Total: -118.45 kcal Atomic # 8 Polarization: -35.65 SS G_CDS: -1.58 Total: -37.23 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.23 kcal Total: -74.20 6.26 -67.95 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126783396.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.275 kcal (2) G-P(sol) polarization free energy of solvation -74.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds