Wall clock time and date at job start Tue Mar 31 2020 16:11:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42904 * 113.99379 * 2 1 4 4 C 1.53006 * 109.46968 * 180.02562 * 3 2 1 5 5 H 1.09004 * 109.46615 * 305.00243 * 4 3 2 6 6 C 1.52996 * 109.46946 * 64.99833 * 4 3 2 7 7 N 1.46492 * 109.47283 * 185.00186 * 4 3 2 8 8 C 1.36541 * 124.77118 * 306.31374 * 7 4 3 9 9 C 1.50694 * 125.38089 * 0.24731 * 8 7 4 10 10 C 1.34328 * 109.23578 * 180.26193 * 8 7 4 11 11 C 1.46965 * 106.38966 * 0.02562 * 10 8 7 12 12 C 1.41822 * 127.08517 * 180.02562 * 11 10 8 13 13 C 1.38175 * 119.99940 * 47.24851 * 12 11 10 14 14 C 1.43191 * 119.99915 * 189.38808 * 13 12 11 15 15 N 9.15361 * 155.10366 * 232.51336 * 3 1 2 16 16 C 1.46831 * 119.99586 * 9.39237 * 13 12 11 17 17 O 1.21706 * 120.00218 * 6.65092 * 16 13 12 18 18 N 1.34782 * 119.99309 * 186.65496 * 16 13 12 19 19 C 1.36882 * 119.99334 * 180.02562 * 18 16 13 20 20 H 1.07999 * 120.00192 * 359.97438 * 19 18 16 21 21 C 1.39010 * 119.99357 * 179.97438 * 19 18 16 22 22 N 1.31388 * 120.00686 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99899 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.46931 * 359.97438 * 23 21 19 25 25 H 1.48496 * 109.47285 * 119.99640 * 23 21 19 26 26 H 1.48497 * 109.47042 * 240.00130 * 23 21 19 27 27 C 1.34586 * 124.77567 * 126.61421 * 7 4 3 28 28 C 1.50699 * 125.95793 * 359.75814 * 27 7 4 29 29 H 1.09004 * 109.47368 * 299.99731 * 1 2 3 30 30 H 1.08992 * 109.47308 * 60.00216 * 1 2 3 31 31 H 1.09007 * 109.46739 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.47197 * 59.99943 * 3 2 1 33 33 H 1.08995 * 109.47263 * 299.99958 * 3 2 1 34 34 H 1.08999 * 109.47070 * 185.33623 * 6 4 3 35 35 H 1.09002 * 109.47214 * 305.33620 * 6 4 3 36 36 H 1.09006 * 109.47319 * 65.33444 * 6 4 3 37 37 H 1.09000 * 109.47767 * 95.40909 * 9 8 7 38 38 H 1.09004 * 109.47154 * 215.41333 * 9 8 7 39 39 H 1.08997 * 109.47408 * 335.40632 * 9 8 7 40 40 H 1.08002 * 126.80384 * 179.97438 * 10 8 7 41 41 H 1.07999 * 119.99749 * 227.25580 * 12 11 10 42 42 H 0.96996 * 120.00118 * 359.97438 * 18 16 13 43 43 H 0.96999 * 120.00651 * 179.97438 * 22 21 19 44 44 H 1.09005 * 109.47152 * 89.99534 * 28 27 7 45 45 H 1.08994 * 109.47668 * 209.99971 * 28 27 7 46 46 H 1.08998 * 109.46988 * 330.00093 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3056 0.0000 4 6 3.5354 1.1849 -0.0006 5 1 3.8514 0.5684 0.8410 6 6 3.9952 0.5371 -1.3083 7 7 4.1308 2.5179 0.1198 8 6 3.8463 3.5745 -0.6969 9 6 2.8749 3.5502 -1.8487 10 6 4.5694 4.6389 -0.3116 11 6 5.3691 4.2017 0.8413 12 6 6.2878 4.9809 1.5897 13 6 5.9313 6.2442 2.0211 14 6 6.9166 7.1082 2.5982 15 7 7.6960 7.7948 3.0577 16 6 4.5421 6.7006 1.8879 17 8 3.6810 5.9275 1.5110 18 7 4.2206 7.9759 2.1829 19 6 2.9254 8.4012 2.0592 20 1 2.1613 7.7151 1.7248 21 6 2.5937 9.7163 2.3639 22 7 3.5232 10.5509 2.7712 23 14 0.8261 10.2967 2.1959 24 1 -0.0212 9.1723 1.7235 25 1 0.3327 10.7690 3.5144 26 1 0.7619 11.4101 1.2154 27 6 5.0395 2.8718 1.0474 28 6 5.6014 1.9773 2.1221 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0278 -0.0005 32 1 1.6884 1.8465 0.8900 33 1 1.6885 1.8464 -0.8899 34 1 5.0707 0.3645 -1.2697 35 1 3.4792 -0.4134 -1.4439 36 1 3.7630 1.1988 -2.1428 37 1 1.9059 3.9213 -1.5149 38 1 3.2491 4.1835 -2.6531 39 1 2.7670 2.5280 -2.2116 40 1 4.5647 5.6212 -0.7606 41 1 7.2661 4.5868 1.8223 42 1 4.9068 8.5919 2.4835 43 1 3.2918 11.4686 2.9835 44 1 6.4944 1.4765 1.7479 45 1 5.8597 2.5764 2.9952 46 1 4.8565 1.2318 2.4005 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000126783573.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:11:06 Heat of formation + Delta-G solvation = 16.625989 kcal Electronic energy + Delta-G solvation = -28563.163503 eV Core-core repulsion = 24647.886778 eV Total energy + Delta-G solvation = -3915.276726 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.18686 -38.50485 -38.08264 -35.98238 -34.99858 -33.90124 -32.85260 -32.09271 -31.26044 -29.26436 -28.59931 -27.67963 -26.02812 -25.43842 -24.41745 -22.84267 -21.78477 -20.46040 -19.09327 -18.34690 -17.83812 -17.19960 -16.59076 -16.23304 -15.98331 -15.32627 -14.87925 -14.72943 -14.41722 -13.94156 -13.85247 -13.72652 -13.49084 -13.30758 -13.10919 -12.96558 -12.90421 -12.85591 -12.55795 -12.44976 -12.27814 -12.06024 -11.93635 -11.82255 -11.77659 -11.56910 -11.55215 -11.29528 -11.17730 -11.14337 -10.72326 -10.37760 -10.27145 -9.90842 -9.57735 -9.21062 -8.40030 -8.02330 -7.43976 -7.07792 -6.48761 -3.80609 1.14714 2.56909 2.90146 3.14688 3.22334 3.24233 3.30165 3.43570 3.71266 3.73669 4.12726 4.43357 4.50393 4.62487 4.69461 4.85706 4.93039 5.01141 5.05063 5.09725 5.18304 5.25094 5.30789 5.35598 5.36341 5.38370 5.39637 5.54672 5.60041 5.60630 5.75401 5.78983 5.90067 5.96801 6.01379 6.17831 6.26718 6.49778 6.52501 6.78392 6.82666 6.90774 7.45709 7.48118 7.64291 7.74714 8.02469 8.05566 8.58204 9.13191 9.50712 10.07456 10.67945 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.010974 B = 0.003709 C = 0.002991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2550.805825 B = 7547.708194 C = 9359.572377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.390 6.390 3 C 0.045 3.955 4 C 0.135 3.865 5 H 0.102 0.898 6 C -0.163 4.163 7 N -0.432 5.432 8 C -0.014 4.014 9 C -0.085 4.085 10 C -0.083 4.083 11 C -0.147 4.147 12 C 0.052 3.948 13 C -0.111 4.111 14 C 0.258 3.742 15 N -0.439 5.439 16 C 0.480 3.520 17 O -0.564 6.564 18 N -0.549 5.549 19 C -0.287 4.287 20 H 0.110 0.890 21 C 0.020 3.980 22 N -0.888 5.888 23 Si 0.932 3.068 24 H -0.266 1.266 25 H -0.281 1.281 26 H -0.280 1.280 27 C 0.054 3.946 28 C -0.086 4.086 29 H 0.044 0.956 30 H 0.043 0.957 31 H 0.087 0.913 32 H 0.060 0.940 33 H 0.067 0.933 34 H 0.062 0.938 35 H 0.077 0.923 36 H 0.068 0.932 37 H 0.066 0.934 38 H 0.074 0.926 39 H 0.061 0.939 40 H 0.135 0.865 41 H 0.123 0.877 42 H 0.391 0.609 43 H 0.274 0.726 44 H 0.070 0.930 45 H 0.081 0.919 46 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.083 -20.783 -7.622 22.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.308 6.308 3 C -0.032 4.032 4 C 0.032 3.968 5 H 0.120 0.880 6 C -0.220 4.220 7 N -0.111 5.111 8 C -0.119 4.119 9 C -0.143 4.143 10 C -0.107 4.107 11 C -0.154 4.154 12 C 0.025 3.975 13 C -0.119 4.119 14 C -0.055 4.055 15 N -0.116 5.116 16 C 0.267 3.733 17 O -0.449 6.449 18 N -0.183 5.183 19 C -0.417 4.417 20 H 0.127 0.873 21 C -0.183 4.183 22 N -0.528 5.528 23 Si 0.759 3.241 24 H -0.191 1.191 25 H -0.207 1.207 26 H -0.206 1.206 27 C -0.059 4.059 28 C -0.143 4.143 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.105 0.895 32 H 0.078 0.922 33 H 0.085 0.915 34 H 0.081 0.919 35 H 0.096 0.904 36 H 0.087 0.913 37 H 0.085 0.915 38 H 0.093 0.907 39 H 0.080 0.920 40 H 0.153 0.847 41 H 0.140 0.860 42 H 0.224 0.776 43 H 0.084 0.916 44 H 0.089 0.911 45 H 0.100 0.900 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -0.602 -20.440 -7.155 21.664 hybrid contribution -1.040 1.012 0.208 1.466 sum -1.641 -19.428 -6.947 20.697 Atomic orbital electron populations 1.22758 0.80414 1.02751 1.00432 1.87768 1.20144 1.27337 1.95597 1.23008 0.92795 0.85022 1.02405 1.21033 0.91984 0.82978 1.00821 0.88006 1.22241 1.01968 1.01500 0.96328 1.43104 1.33862 1.08808 1.25367 1.19765 1.05336 0.87968 0.98836 1.20493 0.97375 1.01719 0.94679 1.21515 0.96450 0.96219 0.96476 1.18049 1.04724 0.91554 1.01090 1.20805 0.96571 0.90597 0.89539 1.18780 0.91517 0.94481 1.07098 1.25991 0.92997 0.93480 0.93073 1.81147 1.10953 1.09127 1.10360 1.17116 0.86435 0.83396 0.86391 1.90728 1.48386 1.53470 1.52299 1.42014 1.10456 1.09172 1.56621 1.19841 0.85649 0.95289 1.40947 0.87271 1.25394 1.00050 0.95909 0.96937 1.69638 1.33539 1.06010 1.43587 0.85762 0.81636 0.78794 0.77948 1.19054 1.20664 1.20625 1.20472 0.96604 0.94369 0.94488 1.20349 1.00110 0.97988 0.95869 0.93781 0.93876 0.89468 0.92181 0.91486 0.91869 0.90382 0.91284 0.91522 0.90738 0.92044 0.84713 0.85967 0.77553 0.91576 0.91116 0.90007 0.91965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 11.01 101.05 1.11 1.37 16 2 O -0.39 -3.98 10.15 -35.23 -0.36 -4.34 16 3 C 0.04 0.49 5.09 37.16 0.19 0.68 16 4 C 0.13 1.44 3.01 -67.93 -0.20 1.23 16 5 H 0.10 1.01 6.44 -51.93 -0.33 0.67 16 6 C -0.16 -1.44 9.19 37.16 0.34 -1.10 16 7 N -0.43 -5.82 2.56 -100.49 -0.26 -6.08 16 8 C -0.01 -0.21 6.33 -81.88 -0.52 -0.72 16 9 C -0.09 -1.01 8.43 36.00 0.30 -0.71 16 10 C -0.08 -1.46 7.94 -37.43 -0.30 -1.75 16 11 C -0.15 -2.44 4.56 -104.88 -0.48 -2.92 16 12 C 0.05 0.83 9.31 -38.24 -0.36 0.47 16 13 C -0.11 -2.15 5.87 -104.52 -0.61 -2.77 16 14 C 0.26 5.12 14.20 -22.49 -0.32 4.80 16 15 N -0.44 -9.18 18.54 41.83 0.78 -8.41 16 16 C 0.48 11.31 7.37 -12.78 -0.09 11.22 16 17 O -0.56 -14.06 11.96 5.18 0.06 -14.00 16 18 N -0.55 -14.27 5.23 -12.13 -0.06 -14.33 16 19 C -0.29 -7.89 9.68 -15.01 -0.15 -8.03 16 20 H 0.11 3.06 7.15 -52.49 -0.38 2.69 16 21 C 0.02 0.54 5.50 -17.46 -0.10 0.45 16 22 N -0.89 -24.66 13.05 55.50 0.72 -23.93 16 23 Si 0.93 20.73 29.55 -169.99 -5.02 15.70 16 24 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 25 H -0.28 -6.19 7.11 56.52 0.40 -5.78 16 26 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 27 C 0.05 0.78 6.95 -81.27 -0.56 0.21 16 28 C -0.09 -0.90 9.76 36.00 0.35 -0.55 16 29 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.09 0.52 8.14 -51.92 -0.42 0.09 16 32 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.07 0.70 5.12 -51.93 -0.27 0.44 16 34 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.08 0.63 7.69 -51.93 -0.40 0.23 16 36 H 0.07 0.62 5.44 -51.93 -0.28 0.34 16 37 H 0.07 0.82 8.01 -51.93 -0.42 0.41 16 38 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.06 0.60 4.17 -51.93 -0.22 0.38 16 40 H 0.14 2.53 7.97 -52.49 -0.42 2.11 16 41 H 0.12 1.53 8.06 -52.49 -0.42 1.10 16 42 H 0.39 10.34 6.79 -40.82 -0.28 10.06 16 43 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 44 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.08 0.86 7.96 -51.93 -0.41 0.45 16 46 H 0.06 0.59 6.88 -51.93 -0.36 0.23 16 LS Contribution 383.53 15.07 5.78 5.78 Total: -1.00 -31.86 383.53 -6.02 -37.88 By element: Atomic # 1 Polarization: 16.12 SS G_CDS: -6.27 Total: 9.85 kcal Atomic # 6 Polarization: 3.26 SS G_CDS: -1.39 Total: 1.87 kcal Atomic # 7 Polarization: -53.93 SS G_CDS: 1.18 Total: -52.76 kcal Atomic # 8 Polarization: -18.04 SS G_CDS: -0.30 Total: -18.34 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -31.86 -6.02 -37.88 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126783573.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.509 kcal (2) G-P(sol) polarization free energy of solvation -31.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.883 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds