Wall clock time and date at job start Tue Mar 31 2020 16:11:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42904 * 113.99379 * 2 1 4 4 C 1.53006 * 109.46968 * 180.02562 * 3 2 1 5 5 H 1.09004 * 109.46615 * 305.00243 * 4 3 2 6 6 C 1.52996 * 109.46946 * 64.99833 * 4 3 2 7 7 N 1.46492 * 109.47283 * 185.00186 * 4 3 2 8 8 C 1.36541 * 124.77118 * 306.31374 * 7 4 3 9 9 C 1.50694 * 125.38089 * 0.24731 * 8 7 4 10 10 C 1.34328 * 109.23578 * 180.26193 * 8 7 4 11 11 C 1.46965 * 106.38966 * 0.02562 * 10 8 7 12 12 C 1.41822 * 127.08517 * 180.02562 * 11 10 8 13 13 C 1.38175 * 119.99940 * 47.24851 * 12 11 10 14 14 C 1.43191 * 119.99915 * 189.38808 * 13 12 11 15 15 N 9.15361 * 155.10366 * 232.51336 * 3 1 2 16 16 C 1.46831 * 119.99586 * 9.39237 * 13 12 11 17 17 O 1.21706 * 120.00218 * 6.65092 * 16 13 12 18 18 N 1.34782 * 119.99309 * 186.65496 * 16 13 12 19 19 C 1.36882 * 119.99334 * 180.02562 * 18 16 13 20 20 H 1.07999 * 120.00192 * 359.97438 * 19 18 16 21 21 C 1.39010 * 119.99357 * 179.97438 * 19 18 16 22 22 N 1.31388 * 120.00686 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99899 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.46931 * 359.97438 * 23 21 19 25 25 H 1.48496 * 109.47285 * 119.99640 * 23 21 19 26 26 H 1.48497 * 109.47042 * 240.00130 * 23 21 19 27 27 C 1.34586 * 124.77567 * 126.61421 * 7 4 3 28 28 C 1.50699 * 125.95793 * 359.75814 * 27 7 4 29 29 H 1.09004 * 109.47368 * 299.99731 * 1 2 3 30 30 H 1.08992 * 109.47308 * 60.00216 * 1 2 3 31 31 H 1.09007 * 109.46739 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.47197 * 59.99943 * 3 2 1 33 33 H 1.08995 * 109.47263 * 299.99958 * 3 2 1 34 34 H 1.08999 * 109.47070 * 185.33623 * 6 4 3 35 35 H 1.09002 * 109.47214 * 305.33620 * 6 4 3 36 36 H 1.09006 * 109.47319 * 65.33444 * 6 4 3 37 37 H 1.09000 * 109.47767 * 95.40909 * 9 8 7 38 38 H 1.09004 * 109.47154 * 215.41333 * 9 8 7 39 39 H 1.08997 * 109.47408 * 335.40632 * 9 8 7 40 40 H 1.08002 * 126.80384 * 179.97438 * 10 8 7 41 41 H 1.07999 * 119.99749 * 227.25580 * 12 11 10 42 42 H 0.96996 * 120.00118 * 359.97438 * 18 16 13 43 43 H 0.96999 * 120.00651 * 179.97438 * 22 21 19 44 44 H 1.09005 * 109.47152 * 89.99534 * 28 27 7 45 45 H 1.08994 * 109.47668 * 209.99971 * 28 27 7 46 46 H 1.08998 * 109.46988 * 330.00093 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3056 0.0000 4 6 3.5354 1.1849 -0.0006 5 1 3.8514 0.5684 0.8410 6 6 3.9952 0.5371 -1.3083 7 7 4.1308 2.5179 0.1198 8 6 3.8463 3.5745 -0.6969 9 6 2.8749 3.5502 -1.8487 10 6 4.5694 4.6389 -0.3116 11 6 5.3691 4.2017 0.8413 12 6 6.2878 4.9809 1.5897 13 6 5.9313 6.2442 2.0211 14 6 6.9166 7.1082 2.5982 15 7 7.6960 7.7948 3.0577 16 6 4.5421 6.7006 1.8879 17 8 3.6810 5.9275 1.5110 18 7 4.2206 7.9759 2.1829 19 6 2.9254 8.4012 2.0592 20 1 2.1613 7.7151 1.7248 21 6 2.5937 9.7163 2.3639 22 7 3.5232 10.5509 2.7712 23 14 0.8261 10.2967 2.1959 24 1 -0.0212 9.1723 1.7235 25 1 0.3327 10.7690 3.5144 26 1 0.7619 11.4101 1.2154 27 6 5.0395 2.8718 1.0474 28 6 5.6014 1.9773 2.1221 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0278 -0.0005 32 1 1.6884 1.8465 0.8900 33 1 1.6885 1.8464 -0.8899 34 1 5.0707 0.3645 -1.2697 35 1 3.4792 -0.4134 -1.4439 36 1 3.7630 1.1988 -2.1428 37 1 1.9059 3.9213 -1.5149 38 1 3.2491 4.1835 -2.6531 39 1 2.7670 2.5280 -2.2116 40 1 4.5647 5.6212 -0.7606 41 1 7.2661 4.5868 1.8223 42 1 4.9068 8.5919 2.4835 43 1 3.2918 11.4686 2.9835 44 1 6.4944 1.4765 1.7479 45 1 5.8597 2.5764 2.9952 46 1 4.8565 1.2318 2.4005 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000126783573.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:11:05 Heat of formation + Delta-G solvation = -3.006058 kcal Electronic energy + Delta-G solvation = -28564.014813 eV Core-core repulsion = 24647.886778 eV Total energy + Delta-G solvation = -3916.128035 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.35218 -40.19547 -39.00051 -37.60035 -36.36960 -35.50874 -34.07281 -33.35538 -33.18128 -30.32673 -29.72129 -28.38634 -27.47324 -26.50470 -25.84709 -24.04948 -22.87667 -22.14053 -20.38508 -20.03226 -19.24917 -18.83944 -17.50667 -17.08978 -16.99460 -16.72685 -16.21110 -15.95504 -15.76584 -15.67464 -15.46854 -14.94057 -14.63374 -14.50528 -14.32631 -14.21041 -14.03873 -13.94614 -13.75975 -13.62649 -13.61790 -13.42840 -13.26300 -12.95337 -12.90524 -12.76849 -12.75463 -12.43908 -12.41196 -12.36072 -12.11799 -12.07508 -11.61342 -11.47192 -10.71198 -10.67256 -10.14591 -9.98936 -8.78158 -8.46966 -8.37841 -5.90240 -0.24996 1.36585 1.40403 1.43155 1.55939 1.67713 1.87791 1.91518 2.23399 2.30058 2.75521 2.86932 3.10346 3.34164 3.39753 3.61514 3.84216 3.94240 4.05941 4.06432 4.28721 4.36257 4.36439 4.42969 4.48705 4.54487 4.56313 4.59332 4.74828 4.79312 4.82791 4.84900 4.86674 4.93652 5.02027 5.10220 5.15365 5.21478 5.33529 5.41619 5.52014 5.57920 6.03032 6.03736 6.16892 6.41141 6.51817 6.60294 6.62298 7.13956 7.57039 8.14446 8.72557 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.010974 B = 0.003709 C = 0.002991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2550.805825 B = 7547.708194 C = 9359.572377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.395 6.395 3 C 0.049 3.951 4 C 0.130 3.870 5 H 0.117 0.883 6 C -0.156 4.156 7 N -0.427 5.427 8 C -0.011 4.011 9 C -0.085 4.085 10 C -0.119 4.119 11 C -0.201 4.201 12 C 0.123 3.877 13 C -0.163 4.163 14 C 0.277 3.723 15 N -0.468 5.468 16 C 0.494 3.506 17 O -0.579 6.579 18 N -0.576 5.576 19 C -0.317 4.317 20 H 0.092 0.908 21 C -0.023 4.023 22 N -0.928 5.928 23 Si 0.998 3.002 24 H -0.265 1.265 25 H -0.274 1.274 26 H -0.273 1.273 27 C 0.081 3.919 28 C -0.090 4.090 29 H 0.040 0.960 30 H 0.050 0.950 31 H 0.108 0.892 32 H 0.038 0.962 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.090 0.910 36 H 0.066 0.934 37 H 0.060 0.940 38 H 0.081 0.919 39 H 0.087 0.913 40 H 0.108 0.892 41 H 0.170 0.830 42 H 0.385 0.615 43 H 0.276 0.724 44 H 0.103 0.897 45 H 0.084 0.916 46 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.063 -24.757 -8.322 26.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.314 6.314 3 C -0.028 4.028 4 C 0.028 3.972 5 H 0.135 0.865 6 C -0.213 4.213 7 N -0.106 5.106 8 C -0.117 4.117 9 C -0.142 4.142 10 C -0.142 4.142 11 C -0.208 4.208 12 C 0.098 3.902 13 C -0.171 4.171 14 C -0.036 4.036 15 N -0.146 5.146 16 C 0.283 3.717 17 O -0.464 6.464 18 N -0.212 5.212 19 C -0.447 4.447 20 H 0.110 0.890 21 C -0.222 4.222 22 N -0.570 5.570 23 Si 0.822 3.178 24 H -0.189 1.189 25 H -0.200 1.200 26 H -0.198 1.198 27 C -0.035 4.035 28 C -0.147 4.147 29 H 0.059 0.941 30 H 0.069 0.931 31 H 0.126 0.874 32 H 0.056 0.944 33 H 0.087 0.913 34 H 0.089 0.911 35 H 0.109 0.891 36 H 0.085 0.915 37 H 0.078 0.922 38 H 0.099 0.901 39 H 0.105 0.895 40 H 0.126 0.874 41 H 0.187 0.813 42 H 0.217 0.783 43 H 0.085 0.915 44 H 0.122 0.878 45 H 0.103 0.897 46 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -0.583 -24.467 -7.877 25.710 hybrid contribution -1.027 1.729 0.254 2.027 sum -1.611 -22.738 -7.623 24.036 Atomic orbital electron populations 1.22962 0.79164 1.04242 1.00677 1.87752 1.21485 1.26562 1.95596 1.22876 0.93045 0.85406 1.01468 1.21318 0.91755 0.81388 1.02694 0.86503 1.22193 1.02566 1.01725 0.94824 1.43414 1.33126 1.09679 1.24356 1.20086 1.04532 0.87787 0.99254 1.20565 0.96189 1.03528 0.93873 1.21457 0.98472 0.96117 0.98202 1.18311 1.06992 0.93172 1.02306 1.21415 0.97502 0.88071 0.83252 1.18303 0.89599 0.96519 1.12658 1.25882 0.92554 0.92957 0.92179 1.81148 1.12007 1.09441 1.12032 1.17720 0.88061 0.82373 0.83581 1.90700 1.49832 1.53753 1.52107 1.42048 1.09893 1.09973 1.59246 1.19802 0.86221 0.95792 1.42854 0.88969 1.26208 1.04035 0.95560 0.96403 1.69735 1.35349 1.06305 1.45577 0.84788 0.76725 0.78217 0.78110 1.18865 1.19985 1.19828 1.21103 0.94817 0.93588 0.93997 1.20577 1.01704 0.97832 0.94565 0.94119 0.93103 0.87408 0.94388 0.91290 0.91088 0.89103 0.91497 0.92165 0.90068 0.89477 0.87436 0.81260 0.78299 0.91477 0.87837 0.89683 0.90369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 11.01 113.37 1.25 1.58 16 2 O -0.40 -6.94 10.15 -148.98 -1.51 -8.46 16 3 C 0.05 0.96 5.09 71.98 0.37 1.32 16 4 C 0.13 2.32 3.01 44.99 0.14 2.46 16 5 H 0.12 1.79 6.44 -2.38 -0.02 1.78 16 6 C -0.16 -2.14 9.19 71.98 0.66 -1.48 16 7 N -0.43 -10.41 2.56 -471.84 -1.21 -11.62 16 8 C -0.01 -0.30 6.33 40.93 0.26 -0.04 16 9 C -0.08 -1.90 8.43 71.23 0.60 -1.30 16 10 C -0.12 -4.20 7.94 23.66 0.19 -4.01 16 11 C -0.20 -6.35 4.56 -20.03 -0.09 -6.44 16 12 C 0.12 3.71 9.31 23.14 0.22 3.93 16 13 C -0.16 -6.37 5.87 -19.80 -0.12 -6.48 16 14 C 0.28 11.13 14.20 88.33 1.25 12.38 16 15 N -0.47 -19.95 18.54 19.00 0.35 -19.60 16 16 C 0.49 24.27 7.37 86.49 0.64 24.90 16 17 O -0.58 -29.87 11.96 -4.37 -0.05 -29.92 16 18 N -0.58 -31.69 5.23 -310.49 -1.62 -33.31 16 19 C -0.32 -18.37 9.68 84.09 0.81 -17.56 16 20 H 0.09 5.48 7.15 -2.91 -0.02 5.46 16 21 C -0.02 -1.29 5.50 84.94 0.47 -0.83 16 22 N -0.93 -53.89 13.05 21.67 0.28 -53.61 16 23 Si 1.00 44.01 29.55 68.60 2.03 46.04 16 24 H -0.26 -11.38 7.11 99.48 0.71 -10.68 16 25 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 26 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 27 C 0.08 2.06 6.95 42.21 0.29 2.36 16 28 C -0.09 -1.45 9.76 71.24 0.69 -0.76 16 29 H 0.04 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.11 0.96 8.14 -2.38 -0.02 0.94 16 32 H 0.04 0.90 8.14 -2.38 -0.02 0.88 16 33 H 0.07 1.29 5.12 -2.39 -0.01 1.28 16 34 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.09 1.08 7.69 -2.39 -0.02 1.06 16 36 H 0.07 0.96 5.44 -2.38 -0.01 0.95 16 37 H 0.06 1.45 8.01 -2.39 -0.02 1.43 16 38 H 0.08 1.71 8.14 -2.38 -0.02 1.69 16 39 H 0.09 1.48 4.17 -2.39 -0.01 1.47 16 40 H 0.11 4.30 7.97 -2.91 -0.02 4.28 16 41 H 0.17 3.48 8.06 -2.91 -0.02 3.46 16 42 H 0.38 21.64 6.79 -92.71 -0.63 21.01 16 43 H 0.28 14.96 8.31 -92.71 -0.77 14.19 16 44 H 0.10 1.12 8.14 -2.38 -0.02 1.11 16 45 H 0.08 1.40 7.96 -2.39 -0.02 1.38 16 46 H 0.08 1.08 6.88 -2.39 -0.02 1.06 16 Total: -1.00 -73.83 383.53 6.29 -67.55 By element: Atomic # 1 Polarization: 32.51 SS G_CDS: 0.39 Total: 32.90 kcal Atomic # 6 Polarization: 2.41 SS G_CDS: 7.63 Total: 10.03 kcal Atomic # 7 Polarization: -115.95 SS G_CDS: -2.20 Total: -118.14 kcal Atomic # 8 Polarization: -36.81 SS G_CDS: -1.56 Total: -38.38 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.04 kcal Total: -73.83 6.29 -67.55 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126783573.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.541 kcal (2) G-P(sol) polarization free energy of solvation -73.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds