Wall clock time and date at job start Tue Mar 31 2020 16:09:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42906 * 114.00145 * 2 1 4 4 C 1.53007 * 109.47043 * 179.97438 * 3 2 1 5 5 N 1.46503 * 109.46687 * 180.02562 * 4 3 2 6 6 C 1.36536 * 124.77261 * 90.02592 * 5 4 3 7 7 C 1.50697 * 125.38026 * 0.03397 * 6 5 4 8 8 C 1.34325 * 109.23535 * 179.97438 * 6 5 4 9 9 C 1.46968 * 106.38941 * 359.97438 * 8 6 5 10 10 C 1.41817 * 127.08648 * 180.02562 * 9 8 6 11 11 C 1.38179 * 119.99859 * 17.60203 * 10 9 8 12 12 C 1.43193 * 119.99922 * 5.62385 * 11 10 9 13 13 N 8.60207 * 131.75553 * 12.33956 * 2 1 3 14 14 C 1.46821 * 119.99935 * 185.62685 * 11 10 9 15 15 O 1.21714 * 120.00313 * 32.46899 * 14 11 10 16 16 N 1.34777 * 120.00071 * 212.47016 * 14 11 10 17 17 C 1.46502 * 119.99890 * 356.51528 * 16 14 11 18 18 C 1.36879 * 120.00177 * 176.51255 * 16 14 11 19 19 H 1.08006 * 119.99985 * 320.81949 * 18 16 14 20 20 C 1.39016 * 120.00152 * 140.82113 * 18 16 14 21 21 N 1.31395 * 119.99386 * 352.52781 * 20 18 16 22 22 Si 1.86797 * 120.00304 * 172.53507 * 20 18 16 23 23 H 1.48502 * 109.47123 * 89.99378 * 22 20 18 24 24 H 1.48495 * 109.47063 * 209.99939 * 22 20 18 25 25 H 1.48507 * 109.46838 * 329.99751 * 22 20 18 26 26 C 1.34588 * 124.77161 * 269.72158 * 5 4 3 27 27 C 1.50699 * 125.95656 * 0.02562 * 26 5 4 28 28 H 1.08997 * 109.46604 * 60.00160 * 1 2 3 29 29 H 1.08998 * 109.47265 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47294 * 300.00318 * 1 2 3 31 31 H 1.08994 * 109.47015 * 299.99673 * 3 2 1 32 32 H 1.08997 * 109.46797 * 60.00055 * 3 2 1 33 33 H 1.09003 * 109.46926 * 299.99627 * 4 3 2 34 34 H 1.08999 * 109.46701 * 60.00142 * 4 3 2 35 35 H 1.09003 * 109.47181 * 90.00395 * 7 6 5 36 36 H 1.09004 * 109.46774 * 209.99618 * 7 6 5 37 37 H 1.08994 * 109.47103 * 329.99599 * 7 6 5 38 38 H 1.08002 * 126.80972 * 180.02562 * 8 6 5 39 39 H 1.08001 * 120.00400 * 197.60479 * 10 9 8 40 40 H 1.09005 * 109.46893 * 32.45099 * 17 16 14 41 41 H 1.08997 * 109.47195 * 152.45446 * 17 16 14 42 42 H 1.08995 * 109.46755 * 272.45230 * 17 16 14 43 43 H 0.97000 * 119.99276 * 179.97438 * 21 20 18 44 44 H 1.08994 * 109.47307 * 90.00088 * 27 26 5 45 45 H 1.09005 * 109.47467 * 210.00261 * 27 26 5 46 46 H 1.09003 * 109.47250 * 330.00030 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5356 1.1846 0.0006 5 7 4.1314 2.5230 0.0013 6 6 4.4480 3.2339 1.1231 7 6 4.2406 2.7656 2.5404 8 6 4.9749 4.4161 0.7639 9 6 4.9848 4.4363 -0.7056 10 6 5.4513 5.4812 -1.5434 11 6 6.2831 6.4584 -1.0310 12 6 6.7711 6.3516 0.3109 13 7 7.1576 6.2688 1.3714 14 6 6.6664 7.6061 -1.8625 15 8 5.8901 8.0431 -2.6919 16 7 7.8779 8.1759 -1.7074 17 6 8.7825 7.6995 -0.6581 18 6 8.2632 9.1996 -2.5303 19 1 8.0125 9.1718 -3.5805 20 6 8.9771 10.2751 -2.0144 21 7 9.1553 10.3835 -0.7171 22 14 9.6827 11.5662 -3.1652 23 1 8.6843 12.6465 -3.3690 24 1 10.9168 12.1385 -2.5699 25 1 10.0079 10.9398 -4.4719 26 6 4.4490 3.2223 -1.1039 27 6 4.2531 2.7657 -2.5267 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 1.6887 1.8464 -0.8900 32 1 1.6886 1.8464 0.8900 33 1 3.8568 0.6439 0.8909 34 1 3.8574 0.6436 -0.8891 35 1 5.1297 2.2352 2.8816 36 1 4.0613 3.6262 3.1848 37 1 3.3809 2.0967 2.5798 38 1 5.3231 5.1968 1.4240 39 1 5.1564 5.5132 -2.5819 40 1 8.6325 6.6305 -0.5069 41 1 9.8145 7.8829 -0.9572 42 1 8.5735 8.2308 0.2704 43 1 9.6537 11.1338 -0.3571 44 1 3.2673 3.0739 -2.8748 45 1 5.0186 3.2134 -3.1606 46 1 4.3319 1.6796 -2.5738 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000170627227.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:09:45 Heat of formation + Delta-G solvation = 28.392799 kcal Electronic energy + Delta-G solvation = -27845.772242 eV Core-core repulsion = 23931.005764 eV Total energy + Delta-G solvation = -3914.766478 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.54302 -38.73067 -38.38471 -36.30248 -34.86600 -34.09853 -33.16073 -31.91861 -31.45672 -29.41922 -28.80730 -26.79164 -26.21521 -25.49251 -24.27622 -23.60171 -22.46282 -20.32386 -20.05518 -18.59197 -17.14665 -17.08002 -16.65398 -16.50276 -16.10565 -15.79148 -15.04213 -14.83263 -14.63312 -14.44161 -14.14154 -13.94007 -13.62011 -13.49106 -13.39025 -13.09751 -12.86970 -12.77539 -12.68130 -12.65006 -12.27891 -12.07796 -12.03739 -11.93676 -11.69706 -11.64341 -11.58252 -11.21159 -11.18132 -11.00454 -10.71916 -10.36771 -10.28611 -10.27248 -9.77020 -8.94117 -8.51570 -8.29194 -7.51920 -7.32124 -6.27628 -3.96557 0.95850 2.16388 2.42302 3.11203 3.22255 3.28564 3.32832 3.39258 3.44112 3.77435 4.17138 4.20399 4.38643 4.41818 4.53975 4.69163 4.72245 4.74239 4.80348 4.83915 4.88647 4.98309 5.03340 5.13619 5.14250 5.16777 5.19707 5.36941 5.39962 5.50519 5.57323 5.70147 5.74070 5.83095 6.06774 6.22405 6.35505 6.49123 6.60768 6.64010 6.81360 6.94815 7.09578 7.19244 7.20884 7.57979 8.16911 8.26652 8.51713 9.19858 9.38729 10.00517 10.77218 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.026353 B = 0.002447 C = 0.002303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.261363 B =11437.636480 C =12157.362832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.390 6.390 3 C 0.047 3.953 4 C 0.102 3.898 5 N -0.433 5.433 6 C 0.006 3.994 7 C -0.083 4.083 8 C -0.164 4.164 9 C -0.173 4.173 10 C 0.054 3.946 11 C -0.113 4.113 12 C 0.284 3.716 13 N -0.449 5.449 14 C 0.502 3.498 15 O -0.576 6.576 16 N -0.432 5.432 17 C 0.101 3.899 18 C -0.308 4.308 19 H 0.094 0.906 20 C 0.037 3.963 21 N -0.873 5.873 22 Si 0.927 3.073 23 H -0.276 1.276 24 H -0.284 1.284 25 H -0.268 1.268 26 C 0.069 3.931 27 C -0.092 4.092 28 H 0.044 0.956 29 H 0.090 0.910 30 H 0.044 0.956 31 H 0.059 0.941 32 H 0.058 0.942 33 H 0.099 0.901 34 H 0.100 0.900 35 H 0.071 0.929 36 H 0.081 0.919 37 H 0.060 0.940 38 H 0.151 0.849 39 H 0.145 0.855 40 H 0.033 0.967 41 H 0.063 0.937 42 H 0.060 0.940 43 H 0.269 0.731 44 H 0.078 0.922 45 H 0.090 0.910 46 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.348 -21.805 2.143 25.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.308 6.308 3 C -0.031 4.031 4 C -0.020 4.020 5 N -0.110 5.110 6 C -0.101 4.101 7 C -0.141 4.141 8 C -0.187 4.187 9 C -0.180 4.180 10 C 0.029 3.971 11 C -0.121 4.121 12 C -0.028 4.028 13 N -0.127 5.127 14 C 0.290 3.710 15 O -0.461 6.461 16 N -0.149 5.149 17 C -0.044 4.044 18 C -0.437 4.437 19 H 0.112 0.888 20 C -0.168 4.168 21 N -0.510 5.510 22 Si 0.753 3.247 23 H -0.201 1.201 24 H -0.209 1.209 25 H -0.193 1.193 26 C -0.046 4.046 27 C -0.149 4.149 28 H 0.063 0.937 29 H 0.108 0.892 30 H 0.062 0.938 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.117 0.883 34 H 0.118 0.882 35 H 0.089 0.911 36 H 0.099 0.901 37 H 0.079 0.921 38 H 0.168 0.832 39 H 0.162 0.838 40 H 0.051 0.949 41 H 0.082 0.918 42 H 0.079 0.921 43 H 0.079 0.921 44 H 0.097 0.903 45 H 0.109 0.891 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -13.006 -22.030 3.551 25.828 hybrid contribution 0.103 1.051 -0.613 1.221 sum -12.903 -20.979 2.938 24.804 Atomic orbital electron populations 1.22788 0.80037 1.03107 1.00418 1.87795 1.20495 1.26962 1.95577 1.22820 0.93169 0.85352 1.01747 1.21548 0.92105 0.82579 1.05797 1.43269 1.48147 1.14184 1.05445 1.20147 1.07942 0.93700 0.88300 1.20328 1.01777 1.02020 0.89975 1.22424 1.04767 0.97456 0.94069 1.18622 1.11109 0.95244 0.93002 1.21009 0.89267 0.88463 0.98378 1.18700 1.04969 1.00161 0.88287 1.25219 0.92057 0.92827 0.92656 1.80927 1.10585 1.08984 1.12243 1.17532 0.82398 0.84900 0.86141 1.90659 1.50844 1.65636 1.38977 1.43360 1.11430 1.30504 1.29639 1.21750 0.95075 0.94770 0.92755 1.19473 1.34365 0.97768 0.92048 0.88794 1.25588 0.97628 0.97596 0.96029 1.69923 1.39064 1.30897 1.11107 0.85929 0.78187 0.80524 0.80018 1.20145 1.20927 1.19264 1.20850 1.02484 0.92489 0.88807 1.20471 1.03752 1.01344 0.89359 0.93703 0.89187 0.93785 0.92258 0.92405 0.88303 0.88176 0.91067 0.90062 0.92071 0.83189 0.83786 0.94891 0.91815 0.92147 0.92099 0.90327 0.89139 0.91437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 11.01 101.05 1.11 1.28 16 2 O -0.39 -2.98 10.70 -35.23 -0.38 -3.36 16 3 C 0.05 0.34 6.26 37.16 0.23 0.57 16 4 C 0.10 0.77 5.73 -4.04 -0.02 0.74 16 5 N -0.43 -4.59 2.68 -107.49 -0.29 -4.88 16 6 C 0.01 0.07 6.84 -81.88 -0.56 -0.49 16 7 C -0.08 -0.77 9.79 36.00 0.35 -0.41 16 8 C -0.16 -2.52 9.37 -37.43 -0.35 -2.87 16 9 C -0.17 -2.59 5.91 -104.88 -0.62 -3.21 16 10 C 0.05 0.91 9.17 -38.24 -0.35 0.56 16 11 C -0.11 -2.34 5.43 -104.53 -0.57 -2.91 16 12 C 0.28 5.89 8.15 -22.62 -0.18 5.70 16 13 N -0.45 -9.41 16.84 41.67 0.70 -8.70 16 14 C 0.50 12.72 7.35 -12.79 -0.09 12.62 16 15 O -0.58 -15.96 16.67 5.18 0.09 -15.87 16 16 N -0.43 -11.58 2.93 -123.64 -0.36 -11.94 16 17 C 0.10 2.46 7.30 59.85 0.44 2.90 16 18 C -0.31 -8.72 8.86 -15.01 -0.13 -8.85 16 19 H 0.09 2.67 7.76 -52.48 -0.41 2.27 16 20 C 0.04 1.00 5.19 -17.45 -0.09 0.91 16 21 N -0.87 -24.56 11.55 55.50 0.64 -23.92 16 22 Si 0.93 21.04 29.56 -169.99 -5.02 16.01 16 23 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 24 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 25 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 26 C 0.07 0.80 6.95 -81.27 -0.56 0.24 16 27 C -0.09 -0.75 9.88 36.01 0.36 -0.40 16 28 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 29 H 0.09 0.34 8.14 -51.93 -0.42 -0.09 16 30 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 33 H 0.10 0.67 7.49 -51.93 -0.39 0.28 16 34 H 0.10 0.64 6.87 -51.93 -0.36 0.28 16 35 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 37 H 0.06 0.45 7.57 -51.93 -0.39 0.05 16 38 H 0.15 2.58 5.16 -52.49 -0.27 2.31 16 39 H 0.14 2.18 7.88 -52.49 -0.41 1.77 16 40 H 0.03 0.73 5.39 -51.93 -0.28 0.45 16 41 H 0.06 1.57 7.77 -51.93 -0.40 1.17 16 42 H 0.06 1.59 7.25 -51.93 -0.38 1.21 16 43 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 44 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.09 0.74 7.87 -51.93 -0.41 0.33 16 46 H 0.07 0.43 6.92 -51.93 -0.36 0.07 16 LS Contribution 386.82 15.07 5.83 5.83 Total: -1.00 -34.22 386.82 -6.42 -40.64 By element: Atomic # 1 Polarization: 6.38 SS G_CDS: -6.58 Total: -0.20 kcal Atomic # 6 Polarization: 7.43 SS G_CDS: -1.05 Total: 6.39 kcal Atomic # 7 Polarization: -50.13 SS G_CDS: 0.69 Total: -49.44 kcal Atomic # 8 Polarization: -18.94 SS G_CDS: -0.29 Total: -19.23 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -34.22 -6.42 -40.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170627227.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.031 kcal (2) G-P(sol) polarization free energy of solvation -34.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.638 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds