Wall clock time and date at job start Tue Mar 31 2020 16:09:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42906 * 114.00145 * 2 1 4 4 C 1.53007 * 109.47043 * 179.97438 * 3 2 1 5 5 N 1.46503 * 109.46687 * 180.02562 * 4 3 2 6 6 C 1.36536 * 124.77261 * 90.02592 * 5 4 3 7 7 C 1.50697 * 125.38026 * 0.03397 * 6 5 4 8 8 C 1.34325 * 109.23535 * 179.97438 * 6 5 4 9 9 C 1.46968 * 106.38941 * 359.97438 * 8 6 5 10 10 C 1.41817 * 127.08648 * 180.02562 * 9 8 6 11 11 C 1.38179 * 119.99859 * 17.60203 * 10 9 8 12 12 C 1.43193 * 119.99922 * 5.62385 * 11 10 9 13 13 N 8.60207 * 131.75553 * 12.33956 * 2 1 3 14 14 C 1.46821 * 119.99935 * 185.62685 * 11 10 9 15 15 O 1.21714 * 120.00313 * 32.46899 * 14 11 10 16 16 N 1.34777 * 120.00071 * 212.47016 * 14 11 10 17 17 C 1.46502 * 119.99890 * 356.51528 * 16 14 11 18 18 C 1.36879 * 120.00177 * 176.51255 * 16 14 11 19 19 H 1.08006 * 119.99985 * 320.81949 * 18 16 14 20 20 C 1.39016 * 120.00152 * 140.82113 * 18 16 14 21 21 N 1.31395 * 119.99386 * 352.52781 * 20 18 16 22 22 Si 1.86797 * 120.00304 * 172.53507 * 20 18 16 23 23 H 1.48502 * 109.47123 * 89.99378 * 22 20 18 24 24 H 1.48495 * 109.47063 * 209.99939 * 22 20 18 25 25 H 1.48507 * 109.46838 * 329.99751 * 22 20 18 26 26 C 1.34588 * 124.77161 * 269.72158 * 5 4 3 27 27 C 1.50699 * 125.95656 * 0.02562 * 26 5 4 28 28 H 1.08997 * 109.46604 * 60.00160 * 1 2 3 29 29 H 1.08998 * 109.47265 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47294 * 300.00318 * 1 2 3 31 31 H 1.08994 * 109.47015 * 299.99673 * 3 2 1 32 32 H 1.08997 * 109.46797 * 60.00055 * 3 2 1 33 33 H 1.09003 * 109.46926 * 299.99627 * 4 3 2 34 34 H 1.08999 * 109.46701 * 60.00142 * 4 3 2 35 35 H 1.09003 * 109.47181 * 90.00395 * 7 6 5 36 36 H 1.09004 * 109.46774 * 209.99618 * 7 6 5 37 37 H 1.08994 * 109.47103 * 329.99599 * 7 6 5 38 38 H 1.08002 * 126.80972 * 180.02562 * 8 6 5 39 39 H 1.08001 * 120.00400 * 197.60479 * 10 9 8 40 40 H 1.09005 * 109.46893 * 32.45099 * 17 16 14 41 41 H 1.08997 * 109.47195 * 152.45446 * 17 16 14 42 42 H 1.08995 * 109.46755 * 272.45230 * 17 16 14 43 43 H 0.97000 * 119.99276 * 179.97438 * 21 20 18 44 44 H 1.08994 * 109.47307 * 90.00088 * 27 26 5 45 45 H 1.09005 * 109.47467 * 210.00261 * 27 26 5 46 46 H 1.09003 * 109.47250 * 330.00030 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5356 1.1846 0.0006 5 7 4.1314 2.5230 0.0013 6 6 4.4480 3.2339 1.1231 7 6 4.2406 2.7656 2.5404 8 6 4.9749 4.4161 0.7639 9 6 4.9848 4.4363 -0.7056 10 6 5.4513 5.4812 -1.5434 11 6 6.2831 6.4584 -1.0310 12 6 6.7711 6.3516 0.3109 13 7 7.1576 6.2688 1.3714 14 6 6.6664 7.6061 -1.8625 15 8 5.8901 8.0431 -2.6919 16 7 7.8779 8.1759 -1.7074 17 6 8.7825 7.6995 -0.6581 18 6 8.2632 9.1996 -2.5303 19 1 8.0125 9.1718 -3.5805 20 6 8.9771 10.2751 -2.0144 21 7 9.1553 10.3835 -0.7171 22 14 9.6827 11.5662 -3.1652 23 1 8.6843 12.6465 -3.3690 24 1 10.9168 12.1385 -2.5699 25 1 10.0079 10.9398 -4.4719 26 6 4.4490 3.2223 -1.1039 27 6 4.2531 2.7657 -2.5267 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 1.6887 1.8464 -0.8900 32 1 1.6886 1.8464 0.8900 33 1 3.8568 0.6439 0.8909 34 1 3.8574 0.6436 -0.8891 35 1 5.1297 2.2352 2.8816 36 1 4.0613 3.6262 3.1848 37 1 3.3809 2.0967 2.5798 38 1 5.3231 5.1968 1.4240 39 1 5.1564 5.5132 -2.5819 40 1 8.6325 6.6305 -0.5069 41 1 9.8145 7.8829 -0.9572 42 1 8.5735 8.2308 0.2704 43 1 9.6537 11.1338 -0.3571 44 1 3.2673 3.0739 -2.8748 45 1 5.0186 3.2134 -3.1606 46 1 4.3319 1.6796 -2.5738 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000170627227.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:09:44 Heat of formation + Delta-G solvation = 6.984860 kcal Electronic energy + Delta-G solvation = -27846.700560 eV Core-core repulsion = 23931.005764 eV Total energy + Delta-G solvation = -3915.694796 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.54346 -40.56515 -38.94677 -37.90074 -36.73098 -35.40262 -34.06342 -33.69294 -32.84195 -30.17609 -29.74140 -28.31936 -27.37491 -26.75903 -25.85356 -24.48210 -23.48339 -21.95622 -21.28869 -19.78548 -18.89159 -18.28208 -17.82812 -17.15687 -17.11598 -16.87016 -16.55330 -16.19416 -15.92302 -15.73548 -15.40902 -15.38188 -15.08263 -14.55829 -14.28191 -14.14286 -14.13456 -14.06546 -13.77864 -13.63622 -13.42843 -13.41979 -13.22724 -13.16483 -12.94305 -12.78320 -12.64487 -12.63567 -12.45947 -12.30189 -12.25094 -12.22933 -12.07103 -11.03952 -10.98615 -10.75638 -10.50937 -9.55710 -9.36785 -8.58764 -8.32135 -6.11938 -0.38792 1.17851 1.42166 1.42672 1.56795 1.59013 1.78341 1.88011 2.01758 2.30389 2.72937 2.86411 3.04714 3.08155 3.32377 3.61221 3.72181 3.78524 3.88709 3.98021 4.12690 4.19802 4.33355 4.39644 4.45598 4.46298 4.47601 4.52842 4.59907 4.67842 4.69144 4.79055 4.79160 4.85243 4.86665 5.00091 5.01924 5.13998 5.15878 5.30073 5.38691 5.44619 5.79012 6.02027 6.05432 6.18488 6.26983 6.47554 6.63142 7.14063 7.37962 7.99687 8.72326 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.026353 B = 0.002447 C = 0.002303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.261363 B =11437.636480 C =12157.362832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.403 6.403 3 C 0.051 3.949 4 C 0.098 3.902 5 N -0.424 5.424 6 C 0.014 3.986 7 C -0.083 4.083 8 C -0.195 4.195 9 C -0.229 4.229 10 C 0.123 3.877 11 C -0.182 4.182 12 C 0.296 3.704 13 N -0.474 5.474 14 C 0.508 3.492 15 O -0.611 6.611 16 N -0.456 5.456 17 C 0.124 3.876 18 C -0.340 4.340 19 H 0.082 0.918 20 C -0.008 4.008 21 N -0.905 5.905 22 Si 0.997 3.003 23 H -0.276 1.276 24 H -0.273 1.273 25 H -0.258 1.258 26 C 0.116 3.884 27 C -0.099 4.099 28 H 0.050 0.950 29 H 0.102 0.898 30 H 0.048 0.952 31 H 0.062 0.938 32 H 0.055 0.945 33 H 0.111 0.889 34 H 0.121 0.879 35 H 0.080 0.920 36 H 0.077 0.923 37 H 0.086 0.914 38 H 0.125 0.875 39 H 0.162 0.838 40 H 0.053 0.947 41 H 0.053 0.947 42 H 0.035 0.965 43 H 0.272 0.728 44 H 0.100 0.900 45 H 0.094 0.906 46 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.122 -25.159 1.197 29.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.322 6.322 3 C -0.027 4.027 4 C -0.023 4.023 5 N -0.100 5.100 6 C -0.093 4.093 7 C -0.140 4.140 8 C -0.218 4.218 9 C -0.236 4.236 10 C 0.098 3.902 11 C -0.190 4.190 12 C -0.015 4.015 13 N -0.153 5.153 14 C 0.298 3.702 15 O -0.498 6.498 16 N -0.174 5.174 17 C -0.020 4.020 18 C -0.468 4.468 19 H 0.099 0.901 20 C -0.210 4.210 21 N -0.542 5.542 22 Si 0.820 3.180 23 H -0.201 1.201 24 H -0.198 1.198 25 H -0.182 1.182 26 C -0.003 4.003 27 C -0.156 4.156 28 H 0.069 0.931 29 H 0.121 0.879 30 H 0.066 0.934 31 H 0.080 0.920 32 H 0.073 0.927 33 H 0.130 0.870 34 H 0.139 0.861 35 H 0.098 0.902 36 H 0.096 0.904 37 H 0.104 0.896 38 H 0.143 0.857 39 H 0.180 0.820 40 H 0.071 0.929 41 H 0.072 0.928 42 H 0.053 0.947 43 H 0.081 0.919 44 H 0.118 0.882 45 H 0.113 0.887 46 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -14.793 -25.427 2.639 29.535 hybrid contribution 0.316 1.680 -0.309 1.738 sum -14.476 -23.747 2.330 27.909 Atomic orbital electron populations 1.22962 0.78845 1.04202 1.00938 1.87770 1.21795 1.26941 1.95665 1.22722 0.92699 0.85438 1.01812 1.21839 0.92366 0.80533 1.07570 1.43562 1.46720 1.15072 1.04637 1.20470 1.06105 0.92733 0.90024 1.20419 1.03241 1.02472 0.87888 1.22357 1.06640 0.98487 0.94313 1.18647 1.15074 0.96920 0.92940 1.21315 0.83653 0.86250 0.98955 1.18074 1.10575 1.01894 0.88453 1.25182 0.91486 0.92312 0.92521 1.80894 1.11838 1.09851 1.12675 1.18073 0.81455 0.85228 0.85399 1.90595 1.51608 1.66900 1.40695 1.43564 1.12499 1.31109 1.30234 1.21477 0.94052 0.95462 0.91022 1.19603 1.35970 0.99200 0.92044 0.90056 1.26497 0.97507 0.99289 0.97661 1.70039 1.39812 1.31692 1.12702 0.84888 0.77506 0.77396 0.78257 1.20143 1.19757 1.18172 1.21418 0.97467 0.90717 0.90701 1.20753 1.05082 1.03327 0.86453 0.93093 0.87923 0.93375 0.91976 0.92703 0.87028 0.86123 0.90182 0.90381 0.89570 0.85721 0.82034 0.92855 0.92832 0.94679 0.91860 0.88156 0.88737 0.88551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 11.01 113.37 1.25 1.44 16 2 O -0.40 -4.63 10.70 -148.98 -1.59 -6.22 16 3 C 0.05 0.53 6.26 71.98 0.45 0.98 16 4 C 0.10 1.01 5.73 86.38 0.50 1.50 16 5 N -0.42 -7.41 2.68 -493.99 -1.33 -8.74 16 6 C 0.01 0.30 6.84 40.93 0.28 0.58 16 7 C -0.08 -1.32 9.79 71.23 0.70 -0.63 16 8 C -0.19 -5.92 9.37 23.66 0.22 -5.70 16 9 C -0.23 -6.56 5.91 -20.03 -0.12 -6.67 16 10 C 0.12 4.07 9.17 23.14 0.21 4.29 16 11 C -0.18 -7.79 5.43 -19.80 -0.11 -7.90 16 12 C 0.30 12.87 8.15 88.38 0.72 13.59 16 13 N -0.47 -20.90 16.84 18.95 0.32 -20.58 16 14 C 0.51 26.93 7.35 86.49 0.64 27.57 16 15 O -0.61 -35.16 16.67 -4.39 -0.07 -35.24 16 16 N -0.46 -25.73 2.93 -663.28 -1.94 -27.67 16 17 C 0.12 6.41 7.30 127.77 0.93 7.34 16 18 C -0.34 -20.10 8.86 84.09 0.75 -19.36 16 19 H 0.08 4.86 7.76 -2.91 -0.02 4.84 16 20 C -0.01 -0.44 5.19 84.94 0.44 0.00 16 21 N -0.90 -52.88 11.55 21.68 0.25 -52.63 16 22 Si 1.00 44.15 29.56 68.60 2.03 46.18 16 23 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 24 H -0.27 -11.47 7.11 99.48 0.71 -10.77 16 25 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16 26 C 0.12 2.29 6.95 42.21 0.29 2.58 16 27 C -0.10 -1.13 9.88 71.24 0.70 -0.43 16 28 H 0.05 0.30 8.14 -2.39 -0.02 0.28 16 29 H 0.10 0.45 8.14 -2.39 -0.02 0.43 16 30 H 0.05 0.30 8.14 -2.39 -0.02 0.28 16 31 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 33 H 0.11 0.97 7.49 -2.39 -0.02 0.95 16 34 H 0.12 0.85 6.87 -2.39 -0.02 0.83 16 35 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 37 H 0.09 0.94 7.57 -2.39 -0.02 0.93 16 38 H 0.13 4.48 5.16 -2.91 -0.02 4.46 16 39 H 0.16 4.65 7.88 -2.91 -0.02 4.62 16 40 H 0.05 2.49 5.39 -2.38 -0.01 2.47 16 41 H 0.05 2.78 7.77 -2.39 -0.02 2.76 16 42 H 0.03 1.96 7.25 -2.39 -0.02 1.94 16 43 H 0.27 14.87 8.31 -92.71 -0.77 14.10 16 44 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 45 H 0.09 1.12 7.87 -2.38 -0.02 1.10 16 46 H 0.10 0.64 6.92 -2.39 -0.02 0.62 16 Total: -1.00 -79.43 386.82 6.51 -72.93 By element: Atomic # 1 Polarization: 11.79 SS G_CDS: 1.00 Total: 12.79 kcal Atomic # 6 Polarization: 11.33 SS G_CDS: 7.85 Total: 19.19 kcal Atomic # 7 Polarization: -106.92 SS G_CDS: -2.70 Total: -109.62 kcal Atomic # 8 Polarization: -39.79 SS G_CDS: -1.67 Total: -41.46 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.18 kcal Total: -79.43 6.51 -72.93 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170627227.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.911 kcal (2) G-P(sol) polarization free energy of solvation -79.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.926 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds