Wall clock time and date at job start Tue Mar 31 2020 16:11:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42906 * 113.99700 * 2 1 4 4 C 1.52997 * 109.46810 * 179.97438 * 3 2 1 5 5 H 1.09004 * 109.47131 * 60.00238 * 4 3 2 6 6 C 1.53003 * 109.47589 * 300.00433 * 4 3 2 7 7 N 1.46505 * 109.47127 * 179.97438 * 4 3 2 8 8 C 1.36537 * 124.77146 * 66.61785 * 7 4 3 9 9 C 1.50695 * 125.37857 * 359.97438 * 8 7 4 10 10 C 1.34318 * 109.23531 * 180.02562 * 8 7 4 11 11 C 1.46967 * 106.39076 * 0.02562 * 10 8 7 12 12 C 1.41821 * 127.08480 * 179.97438 * 11 10 8 13 13 C 1.38182 * 119.99608 * 17.08749 * 12 11 10 14 14 C 1.43194 * 120.00294 * 6.86407 * 13 12 11 15 15 N 8.49752 * 127.33619 * 15.02500 * 2 1 3 16 16 C 1.46826 * 119.99749 * 186.86508 * 13 12 11 17 17 O 1.21715 * 119.99886 * 359.97438 * 16 13 12 18 18 N 1.34775 * 120.00093 * 179.97438 * 16 13 12 19 19 C 1.36877 * 119.99879 * 180.02562 * 18 16 13 20 20 H 1.07995 * 120.00110 * 359.97438 * 19 18 16 21 21 C 1.39020 * 119.99763 * 179.97438 * 19 18 16 22 22 N 1.31388 * 120.00030 * 180.02562 * 21 19 18 23 23 Si 1.86802 * 119.99958 * 0.02562 * 21 19 18 24 24 H 1.48494 * 109.47115 * 89.99769 * 23 21 19 25 25 H 1.48501 * 109.46700 * 210.00093 * 23 21 19 26 26 H 1.48503 * 109.46949 * 329.99868 * 23 21 19 27 27 C 1.34591 * 124.77402 * 246.31827 * 7 4 3 28 28 C 1.50700 * 125.95517 * 359.96319 * 27 7 4 29 29 H 1.08999 * 109.47041 * 300.00244 * 1 2 3 30 30 H 1.09001 * 109.46784 * 59.99322 * 1 2 3 31 31 H 1.08992 * 109.46916 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.46633 * 60.00094 * 3 2 1 33 33 H 1.08997 * 109.47070 * 300.00043 * 3 2 1 34 34 H 1.08994 * 109.46866 * 59.99372 * 6 4 3 35 35 H 1.08995 * 109.46960 * 179.97438 * 6 4 3 36 36 H 1.09004 * 109.46724 * 300.00054 * 6 4 3 37 37 H 1.09003 * 109.46993 * 95.07129 * 9 8 7 38 38 H 1.09000 * 109.46979 * 215.07036 * 9 8 7 39 39 H 1.08996 * 109.47397 * 335.07067 * 9 8 7 40 40 H 1.08004 * 126.80721 * 180.02562 * 10 8 7 41 41 H 1.07996 * 120.00414 * 197.07998 * 12 11 10 42 42 H 0.96995 * 120.00078 * 0.02562 * 18 16 13 43 43 H 0.96997 * 120.00389 * 180.02562 * 22 21 19 44 44 H 1.08999 * 109.46984 * 90.00038 * 28 27 7 45 45 H 1.09000 * 109.46724 * 210.00057 * 28 27 7 46 46 H 1.09001 * 109.47175 * 329.99742 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 1 3.8575 0.6437 -0.8892 6 6 3.9865 0.4256 1.2501 7 7 4.1313 2.5231 0.0000 8 6 4.0411 3.4162 1.0289 9 6 3.3181 3.1785 2.3296 10 6 4.6975 4.5403 0.6980 11 6 5.2388 4.3227 -0.6509 12 6 6.0072 5.2325 -1.4211 13 6 6.6167 6.3117 -0.8102 14 6 6.5970 6.4321 0.6165 15 7 6.5827 6.5253 1.7515 16 6 7.2846 7.3351 -1.6241 17 8 7.3017 7.2325 -2.8368 18 7 7.8787 8.3880 -1.0284 19 6 8.5008 9.3423 -1.7873 20 1 8.5160 9.2513 -2.8633 21 6 9.1131 10.4286 -1.1728 22 7 9.7099 11.3449 -1.9012 23 14 9.0874 10.5856 0.6884 24 1 10.2792 9.9079 1.2588 25 1 9.1076 12.0221 1.0643 26 1 7.8549 9.9516 1.2217 27 6 4.8496 3.0431 -1.0125 28 6 5.1704 2.3553 -2.3144 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5140 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 1.6886 1.8464 0.8900 33 1 1.6886 1.8464 -0.8900 34 1 3.5431 -0.5701 1.2501 35 1 5.0730 0.3392 1.2503 36 1 3.6645 0.9667 2.1399 37 1 4.0253 2.8221 3.0785 38 1 2.8672 4.1106 2.6702 39 1 2.5389 2.4311 2.1809 40 1 4.8060 5.4282 1.3032 41 1 6.1160 5.0818 -2.4850 42 1 7.8653 8.4695 -0.0620 43 1 10.1375 12.1027 -1.4725 44 1 4.3881 2.5714 -3.0419 45 1 6.1269 2.7179 -2.6908 46 1 5.2284 1.2790 -2.1520 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000195453840.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:11:09 Heat of formation + Delta-G solvation = 17.226377 kcal Electronic energy + Delta-G solvation = -27799.723560 eV Core-core repulsion = 23884.472870 eV Total energy + Delta-G solvation = -3915.250691 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.76326 -38.73036 -38.44538 -36.39634 -35.12403 -34.11947 -33.25380 -32.46842 -31.73473 -29.70535 -28.95524 -27.95307 -26.31484 -25.80465 -24.56532 -23.02308 -22.25808 -20.37677 -19.75212 -19.00891 -18.44004 -17.09717 -16.90954 -16.52161 -16.26640 -15.73778 -15.14758 -14.99976 -14.60719 -14.38994 -14.05029 -13.87694 -13.75667 -13.71115 -13.51365 -13.36087 -13.22262 -12.89736 -12.79260 -12.67969 -12.53638 -12.46967 -12.32149 -12.20286 -12.11108 -11.97365 -11.71748 -11.52909 -11.24888 -11.21221 -11.10204 -10.58935 -10.23780 -10.03108 -9.90100 -9.58970 -8.65727 -8.35532 -8.24717 -7.47183 -6.41698 -3.83363 0.81366 2.12427 2.36062 3.00662 3.06546 3.10583 3.13050 3.16903 3.36024 3.49800 4.04430 4.06530 4.30636 4.39424 4.44466 4.47813 4.50498 4.62789 4.67481 4.71166 4.78791 4.82108 4.96047 4.99659 5.12423 5.14235 5.22648 5.27047 5.28133 5.32214 5.35124 5.46122 5.52649 5.63653 5.72051 5.76548 5.78860 6.04414 6.13674 6.46185 6.54804 6.57610 6.88172 7.05975 7.15452 7.48902 7.93766 8.08488 8.51752 8.86391 9.34513 9.78066 10.69643 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.024172 B = 0.002513 C = 0.002362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.075094 B =11140.247953 C =11851.090740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.386 6.386 3 C 0.048 3.952 4 C 0.129 3.871 5 H 0.109 0.891 6 C -0.167 4.167 7 N -0.428 5.428 8 C 0.008 3.992 9 C -0.090 4.090 10 C -0.166 4.166 11 C -0.177 4.177 12 C 0.064 3.936 13 C -0.124 4.124 14 C 0.271 3.729 15 N -0.449 5.449 16 C 0.495 3.505 17 O -0.578 6.578 18 N -0.571 5.571 19 C -0.295 4.295 20 H 0.128 0.872 21 C 0.045 3.955 22 N -0.865 5.865 23 Si 0.871 3.129 24 H -0.267 1.267 25 H -0.272 1.272 26 H -0.267 1.267 27 C 0.075 3.925 28 C -0.094 4.094 29 H 0.043 0.957 30 H 0.044 0.956 31 H 0.090 0.910 32 H 0.064 0.936 33 H 0.059 0.941 34 H 0.083 0.917 35 H 0.065 0.935 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.078 0.922 39 H 0.066 0.934 40 H 0.148 0.852 41 H 0.151 0.849 42 H 0.371 0.629 43 H 0.277 0.723 44 H 0.080 0.920 45 H 0.092 0.908 46 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.521 -24.575 5.874 30.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.304 6.304 3 C -0.029 4.029 4 C 0.027 3.973 5 H 0.127 0.873 6 C -0.224 4.224 7 N -0.106 5.106 8 C -0.099 4.099 9 C -0.147 4.147 10 C -0.189 4.189 11 C -0.183 4.183 12 C 0.037 3.963 13 C -0.132 4.132 14 C -0.041 4.041 15 N -0.127 5.127 16 C 0.283 3.717 17 O -0.463 6.463 18 N -0.207 5.207 19 C -0.424 4.424 20 H 0.145 0.855 21 C -0.160 4.160 22 N -0.504 5.504 23 Si 0.697 3.303 24 H -0.192 1.192 25 H -0.197 1.197 26 H -0.192 1.192 27 C -0.041 4.041 28 C -0.151 4.151 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.108 0.892 32 H 0.082 0.918 33 H 0.077 0.923 34 H 0.101 0.899 35 H 0.084 0.916 36 H 0.090 0.910 37 H 0.091 0.909 38 H 0.097 0.903 39 H 0.085 0.915 40 H 0.166 0.834 41 H 0.168 0.832 42 H 0.204 0.796 43 H 0.087 0.913 44 H 0.098 0.902 45 H 0.110 0.890 46 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -17.411 -24.696 6.838 30.981 hybrid contribution -0.153 0.627 1.118 1.291 sum -17.564 -24.069 7.956 30.840 Atomic orbital electron populations 1.22792 0.80145 1.03119 1.00373 1.87810 1.20326 1.26769 1.95541 1.22923 0.92665 0.85475 1.01871 1.21213 0.92002 0.81802 1.02317 0.87344 1.22271 1.02339 1.01186 0.96645 1.43483 1.41005 1.12548 1.13562 1.20041 1.07073 0.90794 0.91952 1.20583 0.99099 1.02858 0.92161 1.22361 1.02364 0.98458 0.95748 1.18616 1.08721 0.94579 0.96430 1.21035 0.87704 0.88336 0.99193 1.18547 1.09643 1.00958 0.84011 1.25972 0.92401 0.92676 0.93084 1.81242 1.10348 1.09172 1.11935 1.16897 0.84600 0.82858 0.87336 1.90682 1.64735 1.78105 1.12789 1.42241 1.48627 1.21632 1.08169 1.19557 1.28798 0.99310 0.94689 0.85473 1.25086 0.96691 0.95676 0.98582 1.69602 1.33848 1.11111 1.35801 0.86759 0.79368 0.79067 0.85111 1.19182 1.19650 1.19189 1.20879 0.97884 0.93957 0.91367 1.20498 1.03804 0.99411 0.91397 0.93815 0.93751 0.89165 0.91845 0.92321 0.89855 0.91589 0.90954 0.90898 0.90327 0.91507 0.83412 0.83161 0.79551 0.91252 0.90158 0.88951 0.91452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 11.01 101.05 1.11 1.26 16 2 O -0.39 -2.76 10.03 -35.23 -0.35 -3.11 16 3 C 0.05 0.34 5.42 37.16 0.20 0.54 16 4 C 0.13 0.98 3.04 -67.93 -0.21 0.77 16 5 H 0.11 0.73 6.44 -51.93 -0.33 0.39 16 6 C -0.17 -1.15 8.91 37.16 0.33 -0.82 16 7 N -0.43 -4.38 2.57 -100.48 -0.26 -4.63 16 8 C 0.01 0.09 6.36 -81.88 -0.52 -0.43 16 9 C -0.09 -0.78 8.43 36.00 0.30 -0.47 16 10 C -0.17 -2.41 9.37 -37.43 -0.35 -2.77 16 11 C -0.18 -2.53 5.90 -104.88 -0.62 -3.15 16 12 C 0.06 1.02 9.19 -38.23 -0.35 0.67 16 13 C -0.12 -2.38 5.90 -104.52 -0.62 -3.00 16 14 C 0.27 5.23 10.95 -22.38 -0.25 4.99 16 15 N -0.45 -8.84 17.28 41.95 0.72 -8.12 16 16 C 0.49 11.79 7.69 -12.79 -0.10 11.69 16 17 O -0.58 -15.23 15.88 5.18 0.08 -15.15 16 18 N -0.57 -14.50 5.03 -12.13 -0.06 -14.56 16 19 C -0.29 -8.41 10.16 -15.01 -0.15 -8.56 16 20 H 0.13 4.01 7.38 -52.49 -0.39 3.62 16 21 C 0.04 1.24 5.50 -17.45 -0.10 1.15 16 22 N -0.87 -25.03 13.96 55.50 0.77 -24.25 16 23 Si 0.87 20.44 27.74 -169.99 -4.71 15.72 16 24 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 25 H -0.27 -6.22 7.11 56.52 0.40 -5.81 16 26 H -0.27 -6.09 6.52 56.52 0.37 -5.73 16 27 C 0.07 0.85 6.95 -81.27 -0.56 0.28 16 28 C -0.09 -0.75 9.75 36.01 0.35 -0.40 16 29 H 0.04 0.18 8.14 -51.93 -0.42 -0.25 16 30 H 0.04 0.19 8.14 -51.93 -0.42 -0.23 16 31 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.06 0.44 5.47 -51.93 -0.28 0.15 16 33 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.08 0.51 7.68 -51.93 -0.40 0.11 16 35 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.07 0.49 4.90 -51.93 -0.25 0.24 16 37 H 0.07 0.60 7.91 -51.93 -0.41 0.19 16 38 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.07 0.46 4.20 -51.93 -0.22 0.24 16 40 H 0.15 2.39 5.19 -52.48 -0.27 2.11 16 41 H 0.15 2.22 7.51 -52.49 -0.39 1.82 16 42 H 0.37 8.90 4.63 -40.82 -0.19 8.71 16 43 H 0.28 7.38 8.31 -40.82 -0.34 7.04 16 44 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.09 0.74 7.87 -51.93 -0.41 0.33 16 46 H 0.07 0.42 6.88 -51.93 -0.36 0.06 16 LS Contribution 379.08 15.07 5.71 5.71 Total: -1.00 -33.41 379.08 -5.65 -39.07 By element: Atomic # 1 Polarization: 13.62 SS G_CDS: -6.04 Total: 7.59 kcal Atomic # 6 Polarization: 3.27 SS G_CDS: -1.52 Total: 1.75 kcal Atomic # 7 Polarization: -52.75 SS G_CDS: 1.18 Total: -51.57 kcal Atomic # 8 Polarization: -17.99 SS G_CDS: -0.27 Total: -18.26 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -4.71 Total: 15.72 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -33.41 -5.65 -39.07 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195453840.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.293 kcal (2) G-P(sol) polarization free energy of solvation -33.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.066 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds