Wall clock time and date at job start Tue Mar 31 2020 16:11:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42906 * 113.99700 * 2 1 4 4 C 1.52997 * 109.46810 * 179.97438 * 3 2 1 5 5 H 1.09004 * 109.47131 * 60.00238 * 4 3 2 6 6 C 1.53003 * 109.47589 * 300.00433 * 4 3 2 7 7 N 1.46505 * 109.47127 * 179.97438 * 4 3 2 8 8 C 1.36537 * 124.77146 * 66.61785 * 7 4 3 9 9 C 1.50695 * 125.37857 * 359.97438 * 8 7 4 10 10 C 1.34318 * 109.23531 * 180.02562 * 8 7 4 11 11 C 1.46967 * 106.39076 * 0.02562 * 10 8 7 12 12 C 1.41821 * 127.08480 * 179.97438 * 11 10 8 13 13 C 1.38182 * 119.99608 * 17.08749 * 12 11 10 14 14 C 1.43194 * 120.00294 * 6.86407 * 13 12 11 15 15 N 8.49752 * 127.33619 * 15.02500 * 2 1 3 16 16 C 1.46826 * 119.99749 * 186.86508 * 13 12 11 17 17 O 1.21715 * 119.99886 * 359.97438 * 16 13 12 18 18 N 1.34775 * 120.00093 * 179.97438 * 16 13 12 19 19 C 1.36877 * 119.99879 * 180.02562 * 18 16 13 20 20 H 1.07995 * 120.00110 * 359.97438 * 19 18 16 21 21 C 1.39020 * 119.99763 * 179.97438 * 19 18 16 22 22 N 1.31388 * 120.00030 * 180.02562 * 21 19 18 23 23 Si 1.86802 * 119.99958 * 0.02562 * 21 19 18 24 24 H 1.48494 * 109.47115 * 89.99769 * 23 21 19 25 25 H 1.48501 * 109.46700 * 210.00093 * 23 21 19 26 26 H 1.48503 * 109.46949 * 329.99868 * 23 21 19 27 27 C 1.34591 * 124.77402 * 246.31827 * 7 4 3 28 28 C 1.50700 * 125.95517 * 359.96319 * 27 7 4 29 29 H 1.08999 * 109.47041 * 300.00244 * 1 2 3 30 30 H 1.09001 * 109.46784 * 59.99322 * 1 2 3 31 31 H 1.08992 * 109.46916 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.46633 * 60.00094 * 3 2 1 33 33 H 1.08997 * 109.47070 * 300.00043 * 3 2 1 34 34 H 1.08994 * 109.46866 * 59.99372 * 6 4 3 35 35 H 1.08995 * 109.46960 * 179.97438 * 6 4 3 36 36 H 1.09004 * 109.46724 * 300.00054 * 6 4 3 37 37 H 1.09003 * 109.46993 * 95.07129 * 9 8 7 38 38 H 1.09000 * 109.46979 * 215.07036 * 9 8 7 39 39 H 1.08996 * 109.47397 * 335.07067 * 9 8 7 40 40 H 1.08004 * 126.80721 * 180.02562 * 10 8 7 41 41 H 1.07996 * 120.00414 * 197.07998 * 12 11 10 42 42 H 0.96995 * 120.00078 * 0.02562 * 18 16 13 43 43 H 0.96997 * 120.00389 * 180.02562 * 22 21 19 44 44 H 1.08999 * 109.46984 * 90.00038 * 28 27 7 45 45 H 1.09000 * 109.46724 * 210.00057 * 28 27 7 46 46 H 1.09001 * 109.47175 * 329.99742 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 1 3.8575 0.6437 -0.8892 6 6 3.9865 0.4256 1.2501 7 7 4.1313 2.5231 0.0000 8 6 4.0411 3.4162 1.0289 9 6 3.3181 3.1785 2.3296 10 6 4.6975 4.5403 0.6980 11 6 5.2388 4.3227 -0.6509 12 6 6.0072 5.2325 -1.4211 13 6 6.6167 6.3117 -0.8102 14 6 6.5970 6.4321 0.6165 15 7 6.5827 6.5253 1.7515 16 6 7.2846 7.3351 -1.6241 17 8 7.3017 7.2325 -2.8368 18 7 7.8787 8.3880 -1.0284 19 6 8.5008 9.3423 -1.7873 20 1 8.5160 9.2513 -2.8633 21 6 9.1131 10.4286 -1.1728 22 7 9.7099 11.3449 -1.9012 23 14 9.0874 10.5856 0.6884 24 1 10.2792 9.9079 1.2588 25 1 9.1076 12.0221 1.0643 26 1 7.8549 9.9516 1.2217 27 6 4.8496 3.0431 -1.0125 28 6 5.1704 2.3553 -2.3144 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5140 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 1.6886 1.8464 0.8900 33 1 1.6886 1.8464 -0.8900 34 1 3.5431 -0.5701 1.2501 35 1 5.0730 0.3392 1.2503 36 1 3.6645 0.9667 2.1399 37 1 4.0253 2.8221 3.0785 38 1 2.8672 4.1106 2.6702 39 1 2.5389 2.4311 2.1809 40 1 4.8060 5.4282 1.3032 41 1 6.1160 5.0818 -2.4850 42 1 7.8653 8.4695 -0.0620 43 1 10.1375 12.1027 -1.4725 44 1 4.3881 2.5714 -3.0419 45 1 6.1269 2.7179 -2.6908 46 1 5.2284 1.2790 -2.1520 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000195453840.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:11:09 Heat of formation + Delta-G solvation = -4.700537 kcal Electronic energy + Delta-G solvation = -27800.674383 eV Core-core repulsion = 23884.472870 eV Total energy + Delta-G solvation = -3916.201513 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.71687 -40.44640 -39.12127 -37.83992 -36.32748 -35.82476 -34.25274 -33.80680 -33.55165 -30.57973 -29.89523 -28.42695 -27.59821 -26.56143 -25.95174 -24.15402 -23.10093 -22.07069 -20.97281 -20.79888 -19.58324 -18.36644 -17.74828 -17.15034 -17.06147 -17.01025 -16.50130 -16.10716 -15.78208 -15.73884 -15.60415 -15.21374 -14.91491 -14.71715 -14.48085 -14.34832 -14.27546 -14.18652 -14.03025 -13.80248 -13.74901 -13.64043 -13.17935 -13.10790 -12.95752 -12.86846 -12.81701 -12.53972 -12.50856 -12.40734 -12.16888 -12.06107 -11.74320 -11.64039 -11.05891 -10.70943 -10.62686 -10.31940 -9.40429 -8.64246 -8.48959 -6.02613 -0.48283 1.16793 1.22570 1.24512 1.30766 1.54545 1.63156 1.77337 1.87614 2.11994 2.70472 2.80854 2.85949 3.10517 3.22871 3.46646 3.63490 3.75554 3.79956 3.94214 3.94850 4.09843 4.23164 4.33479 4.40768 4.47348 4.50863 4.55900 4.57964 4.61447 4.70749 4.74142 4.79687 4.82816 4.86034 4.95064 5.02886 5.14141 5.20528 5.24271 5.36485 5.50609 5.76393 5.91574 6.00926 6.05648 6.25097 6.46884 6.51859 6.79383 7.30490 7.82905 8.67538 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.024172 B = 0.002513 C = 0.002362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.075094 B =11140.247953 C =11851.090740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.397 6.397 3 C 0.052 3.948 4 C 0.124 3.876 5 H 0.126 0.874 6 C -0.164 4.164 7 N -0.420 5.420 8 C 0.017 3.983 9 C -0.090 4.090 10 C -0.192 4.192 11 C -0.232 4.232 12 C 0.136 3.864 13 C -0.184 4.184 14 C 0.284 3.716 15 N -0.468 5.468 16 C 0.514 3.486 17 O -0.609 6.609 18 N -0.588 5.588 19 C -0.320 4.320 20 H 0.079 0.921 21 C 0.000 4.000 22 N -0.916 5.916 23 Si 0.939 3.061 24 H -0.257 1.257 25 H -0.259 1.259 26 H -0.260 1.260 27 C 0.120 3.880 28 C -0.102 4.102 29 H 0.050 0.950 30 H 0.048 0.952 31 H 0.103 0.897 32 H 0.065 0.935 33 H 0.058 0.942 34 H 0.094 0.906 35 H 0.060 0.940 36 H 0.072 0.928 37 H 0.080 0.920 38 H 0.079 0.921 39 H 0.088 0.912 40 H 0.128 0.872 41 H 0.165 0.835 42 H 0.378 0.622 43 H 0.282 0.718 44 H 0.102 0.898 45 H 0.095 0.905 46 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.039 -28.853 7.214 35.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.316 6.316 3 C -0.025 4.025 4 C 0.023 3.977 5 H 0.144 0.856 6 C -0.222 4.222 7 N -0.096 5.096 8 C -0.090 4.090 9 C -0.147 4.147 10 C -0.215 4.215 11 C -0.238 4.238 12 C 0.111 3.889 13 C -0.192 4.192 14 C -0.028 4.028 15 N -0.147 5.147 16 C 0.304 3.696 17 O -0.496 6.496 18 N -0.225 5.225 19 C -0.449 4.449 20 H 0.097 0.903 21 C -0.201 4.201 22 N -0.556 5.556 23 Si 0.761 3.239 24 H -0.181 1.181 25 H -0.183 1.183 26 H -0.185 1.185 27 C 0.001 3.999 28 C -0.159 4.159 29 H 0.068 0.932 30 H 0.066 0.934 31 H 0.121 0.879 32 H 0.083 0.917 33 H 0.076 0.924 34 H 0.113 0.887 35 H 0.080 0.920 36 H 0.091 0.909 37 H 0.098 0.902 38 H 0.098 0.902 39 H 0.107 0.893 40 H 0.146 0.854 41 H 0.182 0.818 42 H 0.213 0.787 43 H 0.092 0.908 44 H 0.120 0.880 45 H 0.114 0.886 46 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -19.965 -29.015 8.202 36.163 hybrid contribution 0.254 1.351 0.565 1.486 sum -19.711 -27.664 8.768 35.082 Atomic orbital electron populations 1.22967 0.78935 1.04220 1.00906 1.87788 1.21621 1.26524 1.95622 1.22821 0.92030 0.85730 1.01962 1.21504 0.92512 0.80038 1.03624 0.85612 1.22257 1.02087 1.01645 0.96174 1.43806 1.39761 1.13362 1.12688 1.20374 1.05728 0.89955 0.92961 1.20688 0.99596 1.03737 0.90676 1.22332 1.04050 0.99129 0.96005 1.18638 1.11573 0.96332 0.97264 1.21369 0.82291 0.85587 0.99682 1.17869 1.14884 1.02586 0.83853 1.25789 0.91813 0.92306 0.92851 1.81220 1.11646 1.09711 1.12112 1.17554 0.82286 0.82516 0.87291 1.90641 1.65445 1.78899 1.14568 1.42059 1.50351 1.21980 1.08155 1.19139 1.31375 1.01382 0.93015 0.90303 1.25804 0.95874 0.94817 1.03610 1.69720 1.35692 1.12172 1.37984 0.85727 0.79798 0.79679 0.78742 1.18141 1.18327 1.18459 1.21445 0.93966 0.92586 0.91945 1.20777 1.04680 1.00800 0.89629 0.93162 0.93360 0.87890 0.91673 0.92420 0.88733 0.92049 0.90874 0.90166 0.90188 0.89331 0.85388 0.81771 0.78742 0.90799 0.87978 0.88620 0.88722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 11.01 113.37 1.25 1.40 16 2 O -0.40 -4.10 10.03 -148.98 -1.49 -5.59 16 3 C 0.05 0.52 5.42 71.98 0.39 0.91 16 4 C 0.12 1.32 3.04 44.99 0.14 1.45 16 5 H 0.13 0.98 6.44 -2.38 -0.02 0.96 16 6 C -0.16 -1.58 8.91 71.98 0.64 -0.94 16 7 N -0.42 -6.93 2.57 -471.82 -1.21 -8.14 16 8 C 0.02 0.34 6.36 40.93 0.26 0.60 16 9 C -0.09 -1.29 8.43 71.23 0.60 -0.69 16 10 C -0.19 -5.32 9.37 23.66 0.22 -5.10 16 11 C -0.23 -6.12 5.90 -20.03 -0.12 -6.24 16 12 C 0.14 4.18 9.19 23.14 0.21 4.39 16 13 C -0.18 -7.17 5.90 -19.80 -0.12 -7.29 16 14 C 0.28 11.09 10.95 88.30 0.97 12.06 16 15 N -0.47 -18.58 17.28 19.04 0.33 -18.25 16 16 C 0.51 25.42 7.69 86.49 0.67 26.08 16 17 O -0.61 -33.41 15.88 -4.40 -0.07 -33.48 16 18 N -0.59 -31.24 5.03 -310.49 -1.56 -32.80 16 19 C -0.32 -19.46 10.16 84.09 0.85 -18.60 16 20 H 0.08 5.43 7.38 -2.91 -0.02 5.40 16 21 C 0.00 -0.02 5.50 84.95 0.47 0.45 16 22 N -0.92 -55.73 13.96 21.68 0.30 -55.42 16 23 Si 0.94 43.44 27.74 68.60 1.90 45.34 16 24 H -0.26 -11.40 7.11 99.48 0.71 -10.70 16 25 H -0.26 -11.35 7.11 99.48 0.71 -10.65 16 26 H -0.26 -11.59 6.52 99.48 0.65 -10.94 16 27 C 0.12 2.24 6.95 42.21 0.29 2.53 16 28 C -0.10 -1.12 9.75 71.24 0.69 -0.42 16 29 H 0.05 0.24 8.14 -2.39 -0.02 0.22 16 30 H 0.05 0.26 8.14 -2.39 -0.02 0.24 16 31 H 0.10 0.36 8.14 -2.39 -0.02 0.34 16 32 H 0.07 0.63 5.47 -2.39 -0.01 0.61 16 33 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 34 H 0.09 0.76 7.68 -2.39 -0.02 0.74 16 35 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 36 H 0.07 0.71 4.90 -2.38 -0.01 0.69 16 37 H 0.08 1.08 7.91 -2.39 -0.02 1.07 16 38 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.09 0.88 4.20 -2.39 -0.01 0.87 16 40 H 0.13 4.12 5.19 -2.91 -0.02 4.11 16 41 H 0.16 4.52 7.51 -2.91 -0.02 4.49 16 42 H 0.38 18.70 4.63 -92.71 -0.43 18.27 16 43 H 0.28 15.68 8.31 -92.71 -0.77 14.91 16 44 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 45 H 0.10 1.10 7.87 -2.39 -0.02 1.08 16 46 H 0.09 0.61 6.88 -2.39 -0.02 0.60 16 Total: -1.00 -78.37 379.08 6.16 -72.21 By element: Atomic # 1 Polarization: 25.00 SS G_CDS: 0.55 Total: 25.54 kcal Atomic # 6 Polarization: 3.18 SS G_CDS: 7.42 Total: 10.60 kcal Atomic # 7 Polarization: -112.48 SS G_CDS: -2.14 Total: -114.62 kcal Atomic # 8 Polarization: -37.51 SS G_CDS: -1.56 Total: -39.08 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 1.90 Total: 45.34 kcal Total: -78.37 6.16 -72.21 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195453840.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.506 kcal (2) G-P(sol) polarization free energy of solvation -78.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds