Wall clock time and date at job start Tue Mar 31 2020 16:11:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42898 * 114.00250 * 2 1 4 4 C 1.52995 * 109.47264 * 179.97438 * 3 2 1 5 5 H 1.08995 * 109.47206 * 305.00122 * 4 3 2 6 6 C 1.53007 * 109.47030 * 65.00091 * 4 3 2 7 7 N 1.46496 * 109.46930 * 184.99730 * 4 3 2 8 8 C 1.36528 * 124.77888 * 306.04406 * 7 4 3 9 9 C 1.50704 * 125.37962 * 359.94362 * 8 7 4 10 10 C 1.34328 * 109.24050 * 180.20822 * 8 7 4 11 11 C 1.46966 * 106.38595 * 359.65830 * 10 8 7 12 12 C 1.41821 * 127.07972 * 180.09603 * 11 10 8 13 13 C 1.38174 * 120.00421 * 14.17538 * 12 11 10 14 14 C 1.43200 * 119.99855 * 7.13765 * 13 12 11 15 15 N 8.11803 * 112.05021 * 0.42014 * 2 1 3 16 16 C 1.46821 * 119.99984 * 187.14460 * 13 12 11 17 17 O 1.21714 * 120.00055 * 359.97438 * 16 13 12 18 18 N 1.34781 * 119.99446 * 179.97438 * 16 13 12 19 19 C 1.36886 * 119.99506 * 180.02562 * 18 16 13 20 20 H 1.08003 * 119.99805 * 359.97438 * 19 18 16 21 21 C 1.39006 * 119.99824 * 180.02562 * 19 18 16 22 22 N 1.31392 * 120.00170 * 359.97438 * 21 19 18 23 23 Si 1.86806 * 119.99890 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.47091 * 59.99736 * 23 21 19 25 25 H 1.48505 * 109.46949 * 179.97438 * 23 21 19 26 26 H 1.48493 * 109.47223 * 299.99510 * 23 21 19 27 27 C 1.34600 * 124.76986 * 126.02559 * 7 4 3 28 28 C 1.50700 * 125.95589 * 359.97438 * 27 7 4 29 29 H 1.08996 * 109.46932 * 59.99885 * 1 2 3 30 30 H 1.08998 * 109.47305 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46766 * 299.99854 * 1 2 3 32 32 H 1.09000 * 109.46717 * 59.99580 * 3 2 1 33 33 H 1.09004 * 109.46664 * 300.00380 * 3 2 1 34 34 H 1.08995 * 109.47082 * 66.43934 * 6 4 3 35 35 H 1.09000 * 109.47133 * 186.44169 * 6 4 3 36 36 H 1.09005 * 109.46843 * 306.43765 * 6 4 3 37 37 H 1.09005 * 109.46813 * 85.03292 * 9 8 7 38 38 H 1.08999 * 109.46965 * 325.03417 * 9 8 7 39 39 H 1.08994 * 109.47222 * 205.03214 * 9 8 7 40 40 H 1.08005 * 126.80612 * 179.75792 * 10 8 7 41 41 H 1.08002 * 119.99825 * 194.16665 * 12 11 10 42 42 H 0.96997 * 120.00619 * 359.97438 * 18 16 13 43 43 H 0.97000 * 120.00125 * 180.02562 * 22 21 19 44 44 H 1.09001 * 109.47044 * 90.00756 * 28 27 7 45 45 H 1.09000 * 109.46853 * 210.00430 * 28 27 7 46 46 H 1.08994 * 109.47165 * 329.99985 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 1 3.8508 0.5685 0.8426 6 6 3.9963 0.5363 -1.3065 7 7 4.1308 2.5177 0.1210 8 6 3.8511 3.5725 -0.6995 9 6 2.8903 3.5442 -1.8603 10 6 4.5718 4.6378 -0.3122 11 6 5.3581 4.2055 0.8518 12 6 6.2689 4.9878 1.6066 13 6 6.2798 6.3624 1.4672 14 6 5.2743 7.0102 0.6797 15 7 4.4767 7.5240 0.0552 16 6 7.3223 7.1589 2.1262 17 8 8.1768 6.6083 2.7958 18 7 7.3332 8.4997 1.9896 19 6 8.3055 9.2423 2.6036 20 1 9.0636 8.7537 3.1978 21 6 8.3164 10.6252 2.4633 22 7 7.3938 11.2196 1.7409 23 14 9.6429 11.6386 3.3018 24 1 10.9769 11.2169 2.8039 25 1 9.4335 13.0770 2.9974 26 1 9.5731 11.4277 4.7700 27 6 5.0304 2.8750 1.0562 28 6 5.5839 1.9836 2.1379 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.6886 1.8463 0.8900 33 1 1.6886 1.8463 -0.8900 34 1 3.7827 1.2063 -2.1393 35 1 5.0684 0.3456 -1.2593 36 1 3.4659 -0.4048 -1.4519 37 1 1.8794 3.7347 -1.4998 38 1 2.9271 2.5654 -2.3385 39 1 3.1696 4.3119 -2.5818 40 1 4.5721 5.6182 -0.7653 41 1 6.9539 4.5090 2.2907 42 1 6.6525 8.9385 1.4557 43 1 7.4017 12.1845 1.6426 44 1 6.4812 1.4837 1.7730 45 1 5.8331 2.5850 3.0122 46 1 4.8378 1.2374 2.4110 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000195453846.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:11:13 Heat of formation + Delta-G solvation = 11.309404 kcal Electronic energy + Delta-G solvation = -27720.607782 eV Core-core repulsion = 23805.100513 eV Total energy + Delta-G solvation = -3915.507270 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.67365 -38.62227 -38.29499 -36.29562 -35.02306 -34.07330 -33.19011 -32.33441 -31.28741 -29.60398 -28.86362 -27.94470 -26.25526 -25.64625 -24.59059 -23.04130 -22.19129 -20.34837 -19.73537 -18.69265 -17.99657 -17.02437 -16.86793 -16.47575 -16.19462 -15.63473 -15.12223 -14.78656 -14.62203 -14.23640 -13.96473 -13.91935 -13.80200 -13.63611 -13.50544 -13.33138 -13.12615 -12.90772 -12.73115 -12.51503 -12.40862 -12.34671 -12.24524 -12.05439 -11.89124 -11.61805 -11.54690 -11.47187 -11.11289 -11.07680 -10.97980 -10.46206 -10.26234 -10.20513 -9.82520 -9.51989 -8.50698 -8.26199 -8.04694 -7.34611 -6.49932 -3.82224 0.94053 2.21427 2.42889 3.14119 3.20805 3.24516 3.28498 3.32308 3.39658 3.68896 4.11819 4.13825 4.36553 4.51623 4.53862 4.58368 4.65412 4.74324 4.78921 4.83815 4.88115 4.92904 5.02557 5.06307 5.10459 5.17026 5.27727 5.31065 5.34073 5.38012 5.42875 5.57946 5.62383 5.66640 5.78891 5.87744 5.93942 6.21287 6.32452 6.51222 6.69107 6.72676 6.99567 7.15322 7.24599 7.47330 7.99806 8.12013 8.54042 9.09474 9.46601 10.00857 10.66300 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.026099 B = 0.002338 C = 0.002231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.584456 B =11975.337695 C =12547.648444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.387 6.387 3 C 0.046 3.954 4 C 0.130 3.870 5 H 0.108 0.892 6 C -0.165 4.165 7 N -0.428 5.428 8 C 0.005 3.995 9 C -0.091 4.091 10 C -0.167 4.167 11 C -0.172 4.172 12 C 0.052 3.948 13 C -0.115 4.115 14 C 0.272 3.728 15 N -0.445 5.445 16 C 0.482 3.518 17 O -0.596 6.596 18 N -0.543 5.543 19 C -0.293 4.293 20 H 0.111 0.889 21 C 0.021 3.979 22 N -0.886 5.886 23 Si 0.937 3.063 24 H -0.271 1.271 25 H -0.283 1.283 26 H -0.271 1.271 27 C 0.071 3.929 28 C -0.092 4.092 29 H 0.043 0.957 30 H 0.090 0.910 31 H 0.043 0.957 32 H 0.058 0.942 33 H 0.067 0.933 34 H 0.069 0.931 35 H 0.066 0.934 36 H 0.082 0.918 37 H 0.067 0.933 38 H 0.069 0.931 39 H 0.081 0.919 40 H 0.151 0.849 41 H 0.148 0.852 42 H 0.394 0.606 43 H 0.276 0.724 44 H 0.080 0.920 45 H 0.091 0.909 46 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.438 -23.261 -5.441 26.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.305 6.305 3 C -0.031 4.031 4 C 0.027 3.973 5 H 0.126 0.874 6 C -0.222 4.222 7 N -0.106 5.106 8 C -0.102 4.102 9 C -0.148 4.148 10 C -0.191 4.191 11 C -0.179 4.179 12 C 0.026 3.974 13 C -0.122 4.122 14 C -0.040 4.040 15 N -0.123 5.123 16 C 0.270 3.730 17 O -0.484 6.484 18 N -0.175 5.175 19 C -0.423 4.423 20 H 0.129 0.871 21 C -0.182 4.182 22 N -0.525 5.525 23 Si 0.763 3.237 24 H -0.196 1.196 25 H -0.209 1.209 26 H -0.196 1.196 27 C -0.044 4.044 28 C -0.150 4.150 29 H 0.062 0.938 30 H 0.108 0.892 31 H 0.062 0.938 32 H 0.076 0.924 33 H 0.085 0.915 34 H 0.088 0.912 35 H 0.085 0.915 36 H 0.101 0.899 37 H 0.085 0.915 38 H 0.087 0.913 39 H 0.100 0.900 40 H 0.168 0.832 41 H 0.166 0.834 42 H 0.227 0.773 43 H 0.086 0.914 44 H 0.098 0.902 45 H 0.109 0.891 46 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -13.176 -23.006 -6.059 27.195 hybrid contribution 0.185 1.023 0.243 1.068 sum -12.991 -21.983 -5.816 26.188 Atomic orbital electron populations 1.22785 0.80157 1.03081 1.00377 1.87795 1.20323 1.26868 1.95557 1.22937 0.92608 0.85461 1.02110 1.21190 0.92102 0.82416 1.01593 0.87358 1.22261 1.02410 1.01695 0.95884 1.43438 1.33569 1.09169 1.24469 1.20042 1.04672 0.87597 0.97898 1.20584 0.96816 1.03031 0.94360 1.22507 0.99246 0.98772 0.98574 1.18619 1.05309 0.92706 1.01230 1.20974 0.93004 0.90632 0.92822 1.18578 0.96412 0.93389 1.03868 1.25787 0.93131 0.92309 0.92748 1.81091 1.11219 1.09223 1.10802 1.17053 0.86762 0.82461 0.86733 1.90638 1.40946 1.70972 1.45830 1.41930 1.27006 1.04926 1.43666 1.19818 1.06930 0.88574 1.26940 0.87148 1.25442 0.98354 0.97211 0.97221 1.69630 1.33444 1.11373 1.38069 0.85819 0.80330 0.77942 0.79607 1.19589 1.20871 1.19589 1.20845 0.95179 0.94684 0.93730 1.20476 1.00659 0.98114 0.95721 0.93792 0.89188 0.93790 0.92416 0.91538 0.91209 0.91510 0.89930 0.91468 0.91289 0.90042 0.83154 0.83409 0.77259 0.91359 0.90181 0.89066 0.91602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 11.01 101.05 1.11 1.28 16 2 O -0.39 -3.00 10.14 -35.23 -0.36 -3.36 16 3 C 0.05 0.36 5.11 37.15 0.19 0.55 16 4 C 0.13 1.06 3.01 -67.93 -0.20 0.85 16 5 H 0.11 0.79 6.44 -51.93 -0.33 0.46 16 6 C -0.17 -1.18 9.25 37.16 0.34 -0.83 16 7 N -0.43 -4.68 2.56 -100.49 -0.26 -4.94 16 8 C 0.00 0.06 6.32 -81.88 -0.52 -0.46 16 9 C -0.09 -0.84 8.36 36.01 0.30 -0.54 16 10 C -0.17 -2.60 9.39 -37.43 -0.35 -2.95 16 11 C -0.17 -2.62 5.94 -104.88 -0.62 -3.24 16 12 C 0.05 0.89 9.21 -38.24 -0.35 0.53 16 13 C -0.11 -2.34 5.90 -104.53 -0.62 -2.96 16 14 C 0.27 5.61 10.95 -22.48 -0.25 5.37 16 15 N -0.45 -9.36 17.13 41.83 0.72 -8.64 16 16 C 0.48 11.96 7.69 -12.79 -0.10 11.86 16 17 O -0.60 -16.00 15.88 5.18 0.08 -15.92 16 18 N -0.54 -14.56 5.23 -12.13 -0.06 -14.62 16 19 C -0.29 -8.23 9.68 -15.01 -0.15 -8.38 16 20 H 0.11 3.15 7.15 -52.48 -0.38 2.77 16 21 C 0.02 0.58 5.50 -17.46 -0.10 0.48 16 22 N -0.89 -24.73 13.05 55.50 0.72 -24.00 16 23 Si 0.94 20.88 29.55 -169.99 -5.02 15.86 16 24 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 25 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 26 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 27 C 0.07 0.86 6.95 -81.27 -0.56 0.29 16 28 C -0.09 -0.80 9.73 36.01 0.35 -0.45 16 29 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 30 H 0.09 0.35 8.14 -51.93 -0.42 -0.08 16 31 H 0.04 0.22 8.14 -51.93 -0.42 -0.21 16 32 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.07 0.49 5.13 -51.93 -0.27 0.22 16 34 H 0.07 0.51 5.22 -51.93 -0.27 0.24 16 35 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.08 0.53 7.66 -51.93 -0.40 0.13 16 37 H 0.07 0.56 7.51 -51.93 -0.39 0.17 16 38 H 0.07 0.52 4.73 -51.93 -0.25 0.27 16 39 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 40 H 0.15 2.60 4.93 -52.48 -0.26 2.34 16 41 H 0.15 2.33 7.39 -52.49 -0.39 1.94 16 42 H 0.39 10.57 6.76 -40.82 -0.28 10.30 16 43 H 0.28 7.24 8.31 -40.82 -0.34 6.90 16 44 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.09 0.79 7.77 -51.93 -0.40 0.38 16 46 H 0.07 0.45 6.88 -51.93 -0.36 0.10 16 LS Contribution 381.75 15.07 5.75 5.75 Total: -1.00 -32.96 381.75 -6.00 -38.96 By element: Atomic # 1 Polarization: 15.55 SS G_CDS: -6.06 Total: 9.49 kcal Atomic # 6 Polarization: 2.94 SS G_CDS: -1.52 Total: 1.42 kcal Atomic # 7 Polarization: -53.32 SS G_CDS: 1.12 Total: -52.20 kcal Atomic # 8 Polarization: -19.00 SS G_CDS: -0.27 Total: -19.28 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -32.96 -6.00 -38.96 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195453846.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.272 kcal (2) G-P(sol) polarization free energy of solvation -32.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.963 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds