Wall clock time and date at job start Tue Mar 31 2020 16:11:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42898 * 114.00250 * 2 1 4 4 C 1.52995 * 109.47264 * 179.97438 * 3 2 1 5 5 H 1.08995 * 109.47206 * 305.00122 * 4 3 2 6 6 C 1.53007 * 109.47030 * 65.00091 * 4 3 2 7 7 N 1.46496 * 109.46930 * 184.99730 * 4 3 2 8 8 C 1.36528 * 124.77888 * 306.04406 * 7 4 3 9 9 C 1.50704 * 125.37962 * 359.94362 * 8 7 4 10 10 C 1.34328 * 109.24050 * 180.20822 * 8 7 4 11 11 C 1.46966 * 106.38595 * 359.65830 * 10 8 7 12 12 C 1.41821 * 127.07972 * 180.09603 * 11 10 8 13 13 C 1.38174 * 120.00421 * 14.17538 * 12 11 10 14 14 C 1.43200 * 119.99855 * 7.13765 * 13 12 11 15 15 N 8.11803 * 112.05021 * 0.42014 * 2 1 3 16 16 C 1.46821 * 119.99984 * 187.14460 * 13 12 11 17 17 O 1.21714 * 120.00055 * 359.97438 * 16 13 12 18 18 N 1.34781 * 119.99446 * 179.97438 * 16 13 12 19 19 C 1.36886 * 119.99506 * 180.02562 * 18 16 13 20 20 H 1.08003 * 119.99805 * 359.97438 * 19 18 16 21 21 C 1.39006 * 119.99824 * 180.02562 * 19 18 16 22 22 N 1.31392 * 120.00170 * 359.97438 * 21 19 18 23 23 Si 1.86806 * 119.99890 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.47091 * 59.99736 * 23 21 19 25 25 H 1.48505 * 109.46949 * 179.97438 * 23 21 19 26 26 H 1.48493 * 109.47223 * 299.99510 * 23 21 19 27 27 C 1.34600 * 124.76986 * 126.02559 * 7 4 3 28 28 C 1.50700 * 125.95589 * 359.97438 * 27 7 4 29 29 H 1.08996 * 109.46932 * 59.99885 * 1 2 3 30 30 H 1.08998 * 109.47305 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46766 * 299.99854 * 1 2 3 32 32 H 1.09000 * 109.46717 * 59.99580 * 3 2 1 33 33 H 1.09004 * 109.46664 * 300.00380 * 3 2 1 34 34 H 1.08995 * 109.47082 * 66.43934 * 6 4 3 35 35 H 1.09000 * 109.47133 * 186.44169 * 6 4 3 36 36 H 1.09005 * 109.46843 * 306.43765 * 6 4 3 37 37 H 1.09005 * 109.46813 * 85.03292 * 9 8 7 38 38 H 1.08999 * 109.46965 * 325.03417 * 9 8 7 39 39 H 1.08994 * 109.47222 * 205.03214 * 9 8 7 40 40 H 1.08005 * 126.80612 * 179.75792 * 10 8 7 41 41 H 1.08002 * 119.99825 * 194.16665 * 12 11 10 42 42 H 0.96997 * 120.00619 * 359.97438 * 18 16 13 43 43 H 0.97000 * 120.00125 * 180.02562 * 22 21 19 44 44 H 1.09001 * 109.47044 * 90.00756 * 28 27 7 45 45 H 1.09000 * 109.46853 * 210.00430 * 28 27 7 46 46 H 1.08994 * 109.47165 * 329.99985 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 1 3.8508 0.5685 0.8426 6 6 3.9963 0.5363 -1.3065 7 7 4.1308 2.5177 0.1210 8 6 3.8511 3.5725 -0.6995 9 6 2.8903 3.5442 -1.8603 10 6 4.5718 4.6378 -0.3122 11 6 5.3581 4.2055 0.8518 12 6 6.2689 4.9878 1.6066 13 6 6.2798 6.3624 1.4672 14 6 5.2743 7.0102 0.6797 15 7 4.4767 7.5240 0.0552 16 6 7.3223 7.1589 2.1262 17 8 8.1768 6.6083 2.7958 18 7 7.3332 8.4997 1.9896 19 6 8.3055 9.2423 2.6036 20 1 9.0636 8.7537 3.1978 21 6 8.3164 10.6252 2.4633 22 7 7.3938 11.2196 1.7409 23 14 9.6429 11.6386 3.3018 24 1 10.9769 11.2169 2.8039 25 1 9.4335 13.0770 2.9974 26 1 9.5731 11.4277 4.7700 27 6 5.0304 2.8750 1.0562 28 6 5.5839 1.9836 2.1379 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.6886 1.8463 0.8900 33 1 1.6886 1.8463 -0.8900 34 1 3.7827 1.2063 -2.1393 35 1 5.0684 0.3456 -1.2593 36 1 3.4659 -0.4048 -1.4519 37 1 1.8794 3.7347 -1.4998 38 1 2.9271 2.5654 -2.3385 39 1 3.1696 4.3119 -2.5818 40 1 4.5721 5.6182 -0.7653 41 1 6.9539 4.5090 2.2907 42 1 6.6525 8.9385 1.4557 43 1 7.4017 12.1845 1.6426 44 1 6.4812 1.4837 1.7730 45 1 5.8331 2.5850 3.0122 46 1 4.8378 1.2374 2.4110 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000195453846.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:11:12 Heat of formation + Delta-G solvation = -9.818889 kcal Electronic energy + Delta-G solvation = -27721.523974 eV Core-core repulsion = 23805.100513 eV Total energy + Delta-G solvation = -3916.423461 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.69709 -40.27992 -39.11583 -37.83768 -36.26587 -35.79094 -34.25132 -33.55065 -33.25905 -30.52499 -29.87630 -28.44611 -27.56556 -26.53397 -26.00349 -24.20159 -23.09874 -22.08221 -20.96212 -20.17546 -19.56514 -18.38522 -17.71135 -17.13092 -17.06139 -16.78940 -16.34507 -16.10349 -15.89894 -15.77301 -15.60577 -15.18088 -15.02497 -14.66283 -14.43626 -14.30469 -14.17493 -14.12097 -13.81349 -13.72667 -13.58751 -13.50547 -13.16893 -12.91487 -12.89818 -12.86074 -12.75106 -12.49677 -12.44167 -12.30045 -12.23737 -12.10934 -11.70423 -11.55053 -11.05601 -10.73074 -10.51027 -10.08920 -9.38285 -8.60212 -8.49335 -5.95622 -0.43399 1.18726 1.42591 1.43804 1.55053 1.56210 1.72691 1.85752 1.97084 2.30426 2.76659 2.80203 3.10927 3.25367 3.34097 3.50283 3.66159 3.77197 3.79229 3.95072 4.04219 4.18918 4.29545 4.35648 4.37117 4.46934 4.51475 4.53106 4.55605 4.61921 4.70712 4.77469 4.80411 4.84347 4.86590 4.98575 5.02631 5.14850 5.26865 5.29979 5.39185 5.40467 5.78854 5.96744 6.00041 6.07071 6.27125 6.49875 6.58127 7.05753 7.47524 8.01014 8.68333 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.026099 B = 0.002338 C = 0.002231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.584456 B =11975.337695 C =12547.648444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.397 6.397 3 C 0.049 3.951 4 C 0.124 3.876 5 H 0.126 0.874 6 C -0.161 4.161 7 N -0.420 5.420 8 C 0.014 3.986 9 C -0.092 4.092 10 C -0.197 4.197 11 C -0.230 4.230 12 C 0.126 3.874 13 C -0.180 4.180 14 C 0.286 3.714 15 N -0.472 5.472 16 C 0.497 3.503 17 O -0.621 6.621 18 N -0.567 5.567 19 C -0.331 4.331 20 H 0.097 0.903 21 C -0.022 4.022 22 N -0.924 5.924 23 Si 1.005 2.995 24 H -0.265 1.265 25 H -0.274 1.274 26 H -0.265 1.265 27 C 0.118 3.882 28 C -0.100 4.100 29 H 0.051 0.949 30 H 0.104 0.896 31 H 0.045 0.955 32 H 0.050 0.950 33 H 0.071 0.929 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.094 0.906 37 H 0.079 0.921 38 H 0.092 0.908 39 H 0.077 0.923 40 H 0.128 0.872 41 H 0.165 0.835 42 H 0.388 0.612 43 H 0.279 0.721 44 H 0.103 0.897 45 H 0.095 0.905 46 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.405 -27.378 -5.445 30.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.315 6.315 3 C -0.028 4.028 4 C 0.023 3.977 5 H 0.144 0.856 6 C -0.218 4.218 7 N -0.096 5.096 8 C -0.093 4.093 9 C -0.148 4.148 10 C -0.220 4.220 11 C -0.236 4.236 12 C 0.101 3.899 13 C -0.188 4.188 14 C -0.025 4.025 15 N -0.151 5.151 16 C 0.287 3.713 17 O -0.510 6.510 18 N -0.201 5.201 19 C -0.460 4.460 20 H 0.114 0.886 21 C -0.221 4.221 22 N -0.565 5.565 23 Si 0.827 3.173 24 H -0.190 1.190 25 H -0.199 1.199 26 H -0.189 1.189 27 C -0.001 4.001 28 C -0.157 4.157 29 H 0.070 0.930 30 H 0.122 0.878 31 H 0.064 0.936 32 H 0.068 0.932 33 H 0.089 0.911 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.113 0.887 37 H 0.098 0.902 38 H 0.111 0.889 39 H 0.096 0.904 40 H 0.145 0.855 41 H 0.182 0.818 42 H 0.221 0.779 43 H 0.088 0.912 44 H 0.121 0.879 45 H 0.113 0.887 46 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -14.181 -27.166 -6.089 31.243 hybrid contribution 0.252 1.647 0.153 1.673 sum -13.928 -25.518 -5.936 29.672 Atomic orbital electron populations 1.22968 0.78938 1.04265 1.00859 1.87772 1.21629 1.26515 1.95626 1.22846 0.92183 0.85759 1.02038 1.21503 0.92470 0.80587 1.03105 0.85607 1.22239 1.02644 1.02037 0.94919 1.43772 1.32507 1.10102 1.23212 1.20372 1.03721 0.87022 0.98145 1.20700 0.96507 1.04366 0.93266 1.22462 1.00920 0.99014 0.99642 1.18649 1.07722 0.94423 1.02790 1.21317 0.90207 0.89323 0.89062 1.18005 0.98090 0.94048 1.08704 1.25718 0.92764 0.91915 0.92136 1.81056 1.12347 1.09461 1.12201 1.17616 0.86645 0.82078 0.84998 1.90583 1.42212 1.71474 1.46750 1.41955 1.27429 1.05595 1.45085 1.19866 1.07855 0.89581 1.28729 0.88559 1.26347 1.00481 0.97732 0.97559 1.69731 1.35309 1.11624 1.39802 0.84809 0.77432 0.76415 0.78598 1.18998 1.19884 1.18932 1.21436 0.92412 0.93503 0.92759 1.20761 1.02241 0.98253 0.94442 0.93022 0.87750 0.93629 0.93174 0.91074 0.91409 0.91362 0.88688 0.90226 0.88948 0.90371 0.85480 0.81808 0.77868 0.91185 0.87891 0.88660 0.88807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 11.01 113.37 1.25 1.44 16 2 O -0.40 -4.66 10.14 -148.98 -1.51 -6.17 16 3 C 0.05 0.58 5.11 71.98 0.37 0.95 16 4 C 0.12 1.48 3.01 44.99 0.14 1.62 16 5 H 0.13 1.14 6.44 -2.39 -0.02 1.13 16 6 C -0.16 -1.60 9.25 71.98 0.67 -0.94 16 7 N -0.42 -7.67 2.56 -471.83 -1.21 -8.88 16 8 C 0.01 0.33 6.32 40.94 0.26 0.59 16 9 C -0.09 -1.48 8.36 71.24 0.60 -0.88 16 10 C -0.20 -6.03 9.39 23.66 0.22 -5.81 16 11 C -0.23 -6.64 5.94 -20.03 -0.12 -6.76 16 12 C 0.13 4.22 9.21 23.14 0.21 4.43 16 13 C -0.18 -7.66 5.90 -19.80 -0.12 -7.77 16 14 C 0.29 12.44 10.95 88.33 0.97 13.41 16 15 N -0.47 -21.00 17.13 19.00 0.33 -20.68 16 16 C 0.50 25.88 7.69 86.49 0.67 26.54 16 17 O -0.62 -34.41 15.88 -4.39 -0.07 -34.48 16 18 N -0.57 -32.37 5.23 -310.49 -1.62 -34.00 16 19 C -0.33 -19.65 9.68 84.09 0.81 -18.83 16 20 H 0.10 5.80 7.15 -2.91 -0.02 5.78 16 21 C -0.02 -1.22 5.50 84.94 0.47 -0.75 16 22 N -0.92 -54.01 13.05 21.67 0.28 -53.72 16 23 Si 1.01 44.15 29.55 68.60 2.03 46.17 16 24 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 25 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 26 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 27 C 0.12 2.43 6.95 42.21 0.29 2.72 16 28 C -0.10 -1.23 9.73 71.24 0.69 -0.54 16 29 H 0.05 0.31 8.14 -2.39 -0.02 0.29 16 30 H 0.10 0.47 8.14 -2.39 -0.02 0.45 16 31 H 0.05 0.33 8.14 -2.39 -0.02 0.31 16 32 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.07 0.77 5.13 -2.38 -0.01 0.76 16 34 H 0.07 0.72 5.22 -2.39 -0.01 0.70 16 35 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 36 H 0.09 0.78 7.66 -2.38 -0.02 0.76 16 37 H 0.08 1.13 7.51 -2.38 -0.02 1.11 16 38 H 0.09 1.06 4.73 -2.39 -0.01 1.05 16 39 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 40 H 0.13 4.56 4.93 -2.91 -0.01 4.55 16 41 H 0.16 4.85 7.39 -2.91 -0.02 4.83 16 42 H 0.39 22.44 6.76 -92.71 -0.63 21.82 16 43 H 0.28 15.18 8.31 -92.71 -0.77 14.41 16 44 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 45 H 0.09 1.21 7.77 -2.39 -0.02 1.20 16 46 H 0.09 0.73 6.88 -2.39 -0.02 0.71 16 Total: -1.00 -76.73 381.75 6.00 -70.72 By element: Atomic # 1 Polarization: 31.22 SS G_CDS: 0.41 Total: 31.63 kcal Atomic # 6 Polarization: 2.03 SS G_CDS: 7.37 Total: 9.40 kcal Atomic # 7 Polarization: -115.05 SS G_CDS: -2.23 Total: -117.27 kcal Atomic # 8 Polarization: -39.07 SS G_CDS: -1.58 Total: -40.65 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.17 kcal Total: -76.73 6.00 -70.72 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195453846.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.905 kcal (2) G-P(sol) polarization free energy of solvation -76.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds