Wall clock time and date at job start Tue Mar 31 2020 17:19:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.34781 * 120.00234 * 2 1 4 4 O 1.21284 * 119.99768 * 359.97438 * 3 2 1 5 5 C 1.50693 * 120.00293 * 180.02562 * 3 2 1 6 6 C 1.53001 * 110.78245 * 61.78264 * 5 3 2 7 7 C 1.55162 * 110.72015 * 185.02608 * 5 3 2 8 8 C 1.55126 * 101.48960 * 82.69255 * 7 5 3 9 9 N 1.47417 * 104.72267 * 37.29450 * 8 7 5 10 10 C 1.34780 * 125.65049 * 155.81924 * 9 8 7 11 11 O 1.21579 * 120.00463 * 179.69586 * 10 9 8 12 12 N 1.34772 * 119.99589 * 359.69013 * 10 9 8 13 13 C 1.39245 * 120.00018 * 184.99540 * 12 10 9 14 14 C 1.39481 * 119.83389 * 211.52143 * 13 12 10 15 15 C 1.36373 * 120.16623 * 179.97438 * 14 13 12 16 16 C 1.40868 * 119.82986 * 0.02685 * 15 14 13 17 17 C 1.41163 * 120.16192 * 179.97438 * 16 15 14 18 18 H 1.08001 * 120.00114 * 330.42300 * 17 16 15 19 19 C 1.39896 * 119.99632 * 150.42222 * 17 16 15 20 20 N 1.30877 * 120.00278 * 333.85315 * 19 17 16 21 21 Si 1.86801 * 119.99539 * 153.85129 * 19 17 16 22 22 H 1.48503 * 109.47131 * 60.00470 * 21 19 17 23 23 H 1.48503 * 109.46904 * 180.02562 * 21 19 17 24 24 H 1.48496 * 109.47439 * 300.00035 * 21 19 17 25 25 C 1.40870 * 119.67297 * 0.24637 * 16 15 14 26 26 C 1.36371 * 119.82801 * 359.44683 * 25 16 15 27 27 C 1.47029 * 108.70387 * 335.55506 * 9 8 7 28 28 H 1.08999 * 109.47084 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47612 * 300.00554 * 1 2 3 30 30 H 1.09002 * 109.47118 * 60.00285 * 1 2 3 31 31 H 0.96998 * 120.00672 * 179.97438 * 2 1 3 32 32 H 1.09001 * 109.47032 * 298.21040 * 6 5 3 33 33 H 1.08997 * 109.47090 * 58.21759 * 6 5 3 34 34 H 1.09005 * 109.46564 * 178.21571 * 6 5 3 35 35 H 1.09002 * 111.00307 * 200.93368 * 7 5 3 36 36 H 1.09007 * 111.00063 * 324.74069 * 7 5 3 37 37 H 1.09001 * 110.49479 * 278.45547 * 8 7 5 38 38 H 1.08996 * 110.34615 * 156.06103 * 8 7 5 39 39 H 0.97003 * 120.00328 * 4.99430 * 12 10 9 40 40 H 1.07995 * 119.91838 * 359.97438 * 14 13 12 41 41 H 1.08001 * 120.08717 * 179.97438 * 15 14 13 42 42 H 0.97005 * 119.99912 * 354.20056 * 20 19 17 43 43 H 1.08004 * 120.08286 * 179.72619 * 25 16 15 44 44 H 1.07996 * 119.91980 * 180.29249 * 26 25 16 45 45 H 1.09006 * 109.87876 * 120.70197 * 27 9 8 46 46 H 1.09001 * 109.88014 * 241.71095 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5325 2.2176 -0.0005 5 6 3.6458 1.1672 -0.0006 6 6 4.1882 0.4912 -1.2614 7 6 4.1948 2.6129 0.1267 8 6 4.1239 2.8365 1.6601 9 7 4.4882 1.5337 2.2459 10 6 5.0019 1.3421 3.4771 11 8 5.2608 0.2175 3.8597 12 7 5.2288 2.3973 4.2842 13 6 5.8551 2.2114 5.5139 14 6 5.5363 3.0425 6.5877 15 6 6.1452 2.8661 7.7952 16 6 7.0985 1.8416 7.9562 17 6 7.7334 1.6531 9.2028 18 1 7.8870 2.4938 9.8632 19 6 8.1637 0.3773 9.5827 20 7 7.5737 -0.6844 9.0953 21 14 9.5804 0.1893 10.7856 22 1 9.2297 0.8469 12.0701 23 1 9.8404 -1.2535 11.0225 24 1 10.7976 0.8248 10.2203 25 6 7.4194 1.0099 6.8654 26 6 6.7977 1.1944 5.6658 27 6 4.1923 0.4773 1.2671 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.9500 -0.8400 0.0004 32 1 3.8629 -0.5489 -1.2845 33 1 3.8107 1.0097 -2.1427 34 1 5.2775 0.5311 -1.2550 35 1 5.2219 2.6739 -0.2333 36 1 3.5556 3.3213 -0.4004 37 1 3.1139 3.1175 1.9585 38 1 4.8372 3.6022 1.9648 39 1 4.9558 3.2864 4.0086 40 1 4.8056 3.8278 6.4626 41 1 5.8977 3.5107 8.6256 42 1 6.7858 -0.5884 8.5377 43 1 8.1526 0.2252 6.9803 44 1 7.0391 0.5546 4.8299 45 1 5.1031 -0.0714 1.0271 46 1 3.4447 -0.2047 1.6723 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000280618983.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:19:41 Heat of formation + Delta-G solvation = -42.465182 kcal Electronic energy + Delta-G solvation = -28137.092596 eV Core-core repulsion = 24219.253485 eV Total energy + Delta-G solvation = -3917.839111 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.07185 -39.72196 -37.97080 -36.94406 -35.02894 -34.58596 -33.47286 -32.61826 -29.93044 -29.59662 -28.74942 -27.36483 -26.71564 -24.64470 -23.41288 -22.58605 -21.50610 -20.98400 -19.96104 -19.41437 -18.15687 -17.85611 -17.47886 -16.31391 -16.13880 -15.92152 -15.48451 -14.95385 -14.67938 -14.43959 -14.06427 -13.92437 -13.86249 -13.47465 -13.30516 -13.07482 -12.84157 -12.75236 -12.65324 -12.55423 -12.51996 -12.33336 -11.92864 -11.62114 -11.46022 -11.32038 -11.19339 -11.04097 -10.99438 -10.36116 -10.10044 -10.02278 -9.86336 -9.50117 -9.39675 -9.12916 -8.72952 -8.59428 -7.70481 -7.19279 -6.96497 -4.30621 2.27368 2.62238 2.80052 2.82483 2.94364 3.19712 3.25707 3.40837 3.65572 3.90881 4.08591 4.15050 4.31156 4.40520 4.57108 4.65111 4.86578 4.92903 5.02072 5.14282 5.16708 5.27458 5.37680 5.43323 5.50596 5.54557 5.54922 5.63747 5.66939 5.81544 6.00510 6.04885 6.15734 6.29303 6.68281 6.82374 6.95239 7.06849 7.16352 7.18370 7.46628 7.68913 7.82166 7.84440 7.85792 7.90242 8.26377 8.34416 8.39369 8.78597 8.94015 9.05682 10.14083 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.024878 B = 0.002326 C = 0.002289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.201233 B =12034.003542 C =12230.580491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.733 5.733 3 C 0.531 3.469 4 O -0.533 6.533 5 C -0.099 4.099 6 C -0.133 4.133 7 C -0.108 4.108 8 C 0.098 3.902 9 N -0.642 5.642 10 C 0.713 3.287 11 O -0.574 6.574 12 N -0.662 5.662 13 C 0.006 3.994 14 C -0.098 4.098 15 C -0.214 4.214 16 C 0.092 3.908 17 C -0.527 4.527 18 H 0.075 0.925 19 C 0.038 3.962 20 N -0.796 5.796 21 Si 1.064 2.936 22 H -0.277 1.277 23 H -0.275 1.275 24 H -0.275 1.275 25 C -0.203 4.203 26 C -0.070 4.070 27 C 0.143 3.857 28 H 0.076 0.924 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.403 0.597 32 H 0.064 0.936 33 H 0.067 0.933 34 H 0.075 0.925 35 H 0.086 0.914 36 H 0.097 0.903 37 H 0.071 0.929 38 H 0.076 0.924 39 H 0.391 0.609 40 H 0.091 0.909 41 H 0.097 0.903 42 H 0.299 0.701 43 H 0.104 0.896 44 H 0.108 0.892 45 H 0.079 0.921 46 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.774 1.836 -20.633 22.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.385 5.385 3 C 0.316 3.684 4 O -0.409 6.409 5 C -0.103 4.103 6 C -0.190 4.190 7 C -0.146 4.146 8 C -0.026 4.026 9 N -0.382 5.382 10 C 0.416 3.584 11 O -0.450 6.450 12 N -0.308 5.308 13 C -0.087 4.087 14 C -0.118 4.118 15 C -0.234 4.234 16 C 0.089 3.911 17 C -0.555 4.555 18 H 0.093 0.907 19 C -0.184 4.184 20 N -0.419 5.419 21 Si 0.888 3.112 22 H -0.202 1.202 23 H -0.199 1.199 24 H -0.201 1.201 25 C -0.223 4.223 26 C -0.090 4.090 27 C 0.019 3.981 28 H 0.095 0.905 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.237 0.763 32 H 0.083 0.917 33 H 0.086 0.914 34 H 0.094 0.906 35 H 0.105 0.895 36 H 0.116 0.884 37 H 0.089 0.911 38 H 0.094 0.906 39 H 0.225 0.775 40 H 0.109 0.891 41 H 0.115 0.885 42 H 0.112 0.888 43 H 0.122 0.878 44 H 0.126 0.874 45 H 0.097 0.903 46 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -8.076 0.562 -19.534 21.145 hybrid contribution -1.176 1.184 -0.924 1.908 sum -9.252 1.746 -20.458 22.521 Atomic orbital electron populations 1.21554 0.79331 1.02396 1.02390 1.45774 1.07918 1.08804 1.75995 1.20243 0.89267 0.83674 0.75172 1.90694 1.70041 1.31230 1.48912 1.21871 0.91932 0.99222 0.97258 1.21750 1.02189 1.00260 0.94827 1.22789 1.01995 0.94078 0.95736 1.22348 1.00835 0.86296 0.93092 1.47538 1.68714 1.07768 1.14196 1.15465 0.78667 0.85131 0.79126 1.90933 1.58139 1.22260 1.73689 1.42077 1.62298 1.08190 1.18238 1.16919 1.02707 1.04787 0.84266 1.20067 0.99933 0.99371 0.92456 1.20545 1.02087 1.04785 0.95944 1.17711 0.89412 0.90935 0.93032 1.20447 1.35291 0.97121 1.02675 0.90705 1.26978 1.00572 0.91722 0.99101 1.70453 1.15843 1.32548 1.23024 0.83654 0.75099 0.77079 0.75339 1.20241 1.19949 1.20059 1.20798 1.04144 1.04765 0.92581 1.20424 0.94373 0.96483 0.97769 1.21690 1.00685 0.89894 0.85852 0.90520 0.92118 0.92157 0.76295 0.91699 0.91401 0.90597 0.89510 0.88443 0.91116 0.90560 0.77518 0.89092 0.88501 0.88782 0.87775 0.87445 0.90278 0.91578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.58 10.70 59.84 0.64 1.22 16 2 N -0.73 -5.60 5.36 -67.08 -0.36 -5.96 16 3 C 0.53 5.39 6.30 -10.99 -0.07 5.32 16 4 O -0.53 -7.19 15.41 5.55 0.09 -7.10 16 5 C -0.10 -0.85 0.76 -153.83 -0.12 -0.97 16 6 C -0.13 -0.75 8.42 37.16 0.31 -0.44 16 7 C -0.11 -0.94 5.76 -24.46 -0.14 -1.08 16 8 C 0.10 1.08 6.29 -2.42 -0.02 1.06 16 9 N -0.64 -9.12 3.32 -176.10 -0.59 -9.71 16 10 C 0.71 13.62 8.23 -86.92 -0.72 12.91 16 11 O -0.57 -13.37 14.18 5.30 0.08 -13.29 16 12 N -0.66 -12.43 5.27 -14.10 -0.07 -12.50 16 13 C 0.01 0.13 6.33 -83.56 -0.53 -0.40 16 14 C -0.10 -2.20 9.89 -39.79 -0.39 -2.59 16 15 C -0.21 -5.29 9.74 -39.26 -0.38 -5.67 16 16 C 0.09 2.50 5.19 -106.80 -0.55 1.95 16 17 C -0.53 -14.30 8.94 -37.85 -0.34 -14.64 16 18 H 0.07 1.96 7.97 -52.49 -0.42 1.54 16 19 C 0.04 1.00 4.88 -17.34 -0.08 0.91 16 20 N -0.80 -22.08 12.49 55.55 0.69 -21.39 16 21 Si 1.06 22.13 30.00 -169.99 -5.10 17.03 16 22 H -0.28 -5.43 7.11 56.52 0.40 -5.03 16 23 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 24 H -0.28 -5.51 7.11 56.52 0.40 -5.11 16 25 C -0.20 -5.47 8.00 -39.26 -0.31 -5.78 16 26 C -0.07 -1.78 8.58 -39.79 -0.34 -2.12 16 27 C 0.14 1.62 6.00 -3.06 -0.02 1.60 16 28 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.40 2.13 8.34 -40.82 -0.34 1.79 16 32 H 0.06 0.28 7.85 -51.93 -0.41 -0.13 16 33 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.08 0.40 8.13 -51.93 -0.42 -0.02 16 35 H 0.09 0.64 8.04 -51.93 -0.42 0.23 16 36 H 0.10 0.86 7.31 -51.93 -0.38 0.48 16 37 H 0.07 0.85 7.96 -51.93 -0.41 0.43 16 38 H 0.08 0.75 7.37 -51.93 -0.38 0.37 16 39 H 0.39 5.96 7.34 -40.82 -0.30 5.66 16 40 H 0.09 1.75 8.06 -52.49 -0.42 1.32 16 41 H 0.10 2.25 8.06 -52.49 -0.42 1.83 16 42 H 0.30 8.65 6.96 -40.82 -0.28 8.37 16 43 H 0.10 2.90 6.86 -52.48 -0.36 2.54 16 44 H 0.11 2.74 6.24 -52.49 -0.33 2.41 16 45 H 0.08 0.87 7.82 -51.93 -0.41 0.47 16 46 H 0.07 0.78 7.43 -51.93 -0.39 0.39 16 LS Contribution 375.65 15.07 5.66 5.66 Total: -1.00 -34.58 375.65 -9.24 -43.82 By element: Atomic # 1 Polarization: 18.72 SS G_CDS: -6.58 Total: 12.15 kcal Atomic # 6 Polarization: -5.64 SS G_CDS: -3.06 Total: -8.70 kcal Atomic # 7 Polarization: -49.23 SS G_CDS: -0.33 Total: -49.56 kcal Atomic # 8 Polarization: -20.56 SS G_CDS: 0.16 Total: -20.40 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.10 Total: 17.03 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -34.58 -9.24 -43.82 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280618983.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.358 kcal (2) G-P(sol) polarization free energy of solvation -34.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds