Wall clock time and date at job start Tue Mar 31 2020 17:19:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.34781 * 120.00234 * 2 1 4 4 O 1.21284 * 119.99768 * 359.97438 * 3 2 1 5 5 C 1.50693 * 120.00293 * 180.02562 * 3 2 1 6 6 C 1.53001 * 110.78245 * 61.78264 * 5 3 2 7 7 C 1.55162 * 110.72015 * 185.02608 * 5 3 2 8 8 C 1.55126 * 101.48960 * 82.69255 * 7 5 3 9 9 N 1.47417 * 104.72267 * 37.29450 * 8 7 5 10 10 C 1.34780 * 125.65049 * 155.81924 * 9 8 7 11 11 O 1.21579 * 120.00463 * 179.69586 * 10 9 8 12 12 N 1.34772 * 119.99589 * 359.69013 * 10 9 8 13 13 C 1.39245 * 120.00018 * 184.99540 * 12 10 9 14 14 C 1.39481 * 119.83389 * 211.52143 * 13 12 10 15 15 C 1.36373 * 120.16623 * 179.97438 * 14 13 12 16 16 C 1.40868 * 119.82986 * 0.02685 * 15 14 13 17 17 C 1.41163 * 120.16192 * 179.97438 * 16 15 14 18 18 H 1.08001 * 120.00114 * 330.42300 * 17 16 15 19 19 C 1.39896 * 119.99632 * 150.42222 * 17 16 15 20 20 N 1.30877 * 120.00278 * 333.85315 * 19 17 16 21 21 Si 1.86801 * 119.99539 * 153.85129 * 19 17 16 22 22 H 1.48503 * 109.47131 * 60.00470 * 21 19 17 23 23 H 1.48503 * 109.46904 * 180.02562 * 21 19 17 24 24 H 1.48496 * 109.47439 * 300.00035 * 21 19 17 25 25 C 1.40870 * 119.67297 * 0.24637 * 16 15 14 26 26 C 1.36371 * 119.82801 * 359.44683 * 25 16 15 27 27 C 1.47029 * 108.70387 * 335.55506 * 9 8 7 28 28 H 1.08999 * 109.47084 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47612 * 300.00554 * 1 2 3 30 30 H 1.09002 * 109.47118 * 60.00285 * 1 2 3 31 31 H 0.96998 * 120.00672 * 179.97438 * 2 1 3 32 32 H 1.09001 * 109.47032 * 298.21040 * 6 5 3 33 33 H 1.08997 * 109.47090 * 58.21759 * 6 5 3 34 34 H 1.09005 * 109.46564 * 178.21571 * 6 5 3 35 35 H 1.09002 * 111.00307 * 200.93368 * 7 5 3 36 36 H 1.09007 * 111.00063 * 324.74069 * 7 5 3 37 37 H 1.09001 * 110.49479 * 278.45547 * 8 7 5 38 38 H 1.08996 * 110.34615 * 156.06103 * 8 7 5 39 39 H 0.97003 * 120.00328 * 4.99430 * 12 10 9 40 40 H 1.07995 * 119.91838 * 359.97438 * 14 13 12 41 41 H 1.08001 * 120.08717 * 179.97438 * 15 14 13 42 42 H 0.97005 * 119.99912 * 354.20056 * 20 19 17 43 43 H 1.08004 * 120.08286 * 179.72619 * 25 16 15 44 44 H 1.07996 * 119.91980 * 180.29249 * 26 25 16 45 45 H 1.09006 * 109.87876 * 120.70197 * 27 9 8 46 46 H 1.09001 * 109.88014 * 241.71095 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5325 2.2176 -0.0005 5 6 3.6458 1.1672 -0.0006 6 6 4.1882 0.4912 -1.2614 7 6 4.1948 2.6129 0.1267 8 6 4.1239 2.8365 1.6601 9 7 4.4882 1.5337 2.2459 10 6 5.0019 1.3421 3.4771 11 8 5.2608 0.2175 3.8597 12 7 5.2288 2.3973 4.2842 13 6 5.8551 2.2114 5.5139 14 6 5.5363 3.0425 6.5877 15 6 6.1452 2.8661 7.7952 16 6 7.0985 1.8416 7.9562 17 6 7.7334 1.6531 9.2028 18 1 7.8870 2.4938 9.8632 19 6 8.1637 0.3773 9.5827 20 7 7.5737 -0.6844 9.0953 21 14 9.5804 0.1893 10.7856 22 1 9.2297 0.8469 12.0701 23 1 9.8404 -1.2535 11.0225 24 1 10.7976 0.8248 10.2203 25 6 7.4194 1.0099 6.8654 26 6 6.7977 1.1944 5.6658 27 6 4.1923 0.4773 1.2671 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.9500 -0.8400 0.0004 32 1 3.8629 -0.5489 -1.2845 33 1 3.8107 1.0097 -2.1427 34 1 5.2775 0.5311 -1.2550 35 1 5.2219 2.6739 -0.2333 36 1 3.5556 3.3213 -0.4004 37 1 3.1139 3.1175 1.9585 38 1 4.8372 3.6022 1.9648 39 1 4.9558 3.2864 4.0086 40 1 4.8056 3.8278 6.4626 41 1 5.8977 3.5107 8.6256 42 1 6.7858 -0.5884 8.5377 43 1 8.1526 0.2252 6.9803 44 1 7.0391 0.5546 4.8299 45 1 5.1031 -0.0714 1.0271 46 1 3.4447 -0.2047 1.6723 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000280618983.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:19:40 Heat of formation + Delta-G solvation = -65.996174 kcal Electronic energy + Delta-G solvation = -28138.112977 eV Core-core repulsion = 24219.253485 eV Total energy + Delta-G solvation = -3918.859491 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.08049 -41.06394 -39.52960 -38.26718 -36.40619 -35.76524 -34.94535 -33.94888 -31.60206 -30.80360 -30.54118 -27.98259 -27.79045 -26.31817 -24.53053 -23.38471 -23.32803 -22.78051 -20.93483 -20.67828 -19.82768 -19.45546 -18.58099 -17.66315 -17.06722 -17.00065 -16.49875 -16.31777 -16.24929 -15.95264 -15.64280 -15.14835 -14.70452 -14.61190 -14.46957 -14.38806 -14.27986 -13.91791 -13.88190 -13.68013 -13.49677 -13.22875 -13.20792 -13.14085 -12.94889 -12.69623 -12.39601 -12.17930 -11.96892 -11.93911 -11.84223 -11.61971 -11.22085 -11.00139 -10.88083 -10.63854 -10.19494 -9.82648 -9.68823 -9.21529 -8.87490 -6.36371 0.75789 0.94147 1.45015 1.51099 1.52774 1.62078 1.80873 2.06219 2.18090 2.36098 2.71656 2.94705 3.21036 3.40965 3.53672 3.63024 3.91971 4.17703 4.21425 4.25511 4.33546 4.40420 4.46719 4.53504 4.57914 4.65077 4.73559 4.79245 4.88155 4.89131 4.90201 4.96913 5.01426 5.05037 5.18761 5.24336 5.27623 5.36998 5.42789 5.58528 5.75914 5.82107 5.93930 6.04670 6.25563 6.36593 6.43254 6.77716 6.89075 6.96367 7.13857 7.51466 8.05993 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.024878 B = 0.002326 C = 0.002289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.201233 B =12034.003542 C =12230.580491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.725 5.725 3 C 0.524 3.476 4 O -0.571 6.571 5 C -0.086 4.086 6 C -0.130 4.130 7 C -0.101 4.101 8 C 0.091 3.909 9 N -0.634 5.634 10 C 0.709 3.291 11 O -0.621 6.621 12 N -0.655 5.655 13 C 0.025 3.975 14 C -0.093 4.093 15 C -0.219 4.219 16 C 0.063 3.937 17 C -0.560 4.560 18 H 0.077 0.923 19 C 0.000 4.000 20 N -0.823 5.823 21 Si 1.118 2.882 22 H -0.254 1.254 23 H -0.275 1.275 24 H -0.263 1.263 25 C -0.219 4.219 26 C -0.084 4.084 27 C 0.136 3.864 28 H 0.107 0.893 29 H 0.042 0.958 30 H 0.059 0.941 31 H 0.415 0.585 32 H 0.080 0.920 33 H 0.076 0.924 34 H 0.084 0.916 35 H 0.106 0.894 36 H 0.101 0.899 37 H 0.063 0.937 38 H 0.092 0.908 39 H 0.412 0.588 40 H 0.134 0.866 41 H 0.111 0.889 42 H 0.278 0.722 43 H 0.081 0.919 44 H 0.100 0.900 45 H 0.085 0.915 46 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.206 2.899 -22.345 24.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.376 5.376 3 C 0.311 3.689 4 O -0.450 6.450 5 C -0.090 4.090 6 C -0.187 4.187 7 C -0.139 4.139 8 C -0.031 4.031 9 N -0.373 5.373 10 C 0.412 3.588 11 O -0.502 6.502 12 N -0.303 5.303 13 C -0.068 4.068 14 C -0.113 4.113 15 C -0.239 4.239 16 C 0.060 3.940 17 C -0.588 4.588 18 H 0.095 0.905 19 C -0.215 4.215 20 N -0.446 5.446 21 Si 0.935 3.065 22 H -0.178 1.178 23 H -0.199 1.199 24 H -0.188 1.188 25 C -0.239 4.239 26 C -0.104 4.104 27 C 0.013 3.987 28 H 0.126 0.874 29 H 0.061 0.939 30 H 0.077 0.923 31 H 0.252 0.748 32 H 0.099 0.901 33 H 0.095 0.905 34 H 0.103 0.897 35 H 0.124 0.876 36 H 0.119 0.881 37 H 0.081 0.919 38 H 0.110 0.890 39 H 0.249 0.751 40 H 0.152 0.848 41 H 0.129 0.871 42 H 0.089 0.911 43 H 0.099 0.901 44 H 0.118 0.882 45 H 0.103 0.897 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -8.555 1.650 -21.323 23.034 hybrid contribution -1.231 0.915 -0.616 1.653 sum -9.785 2.565 -21.939 24.159 Atomic orbital electron populations 1.21665 0.78713 1.04176 1.01437 1.45796 1.08497 1.08805 1.74543 1.20557 0.89933 0.83717 0.74728 1.90679 1.70822 1.32575 1.50916 1.21827 0.90914 0.99144 0.97129 1.21792 1.02681 1.00991 0.93238 1.22815 1.03260 0.94148 0.93710 1.22576 1.00744 0.85012 0.94733 1.47533 1.66816 1.10114 1.12816 1.15632 0.78625 0.84291 0.80278 1.90907 1.60130 1.24078 1.75070 1.41875 1.61973 1.09442 1.17011 1.16999 1.00917 1.02998 0.85932 1.20408 0.99877 0.99880 0.91170 1.20817 1.01443 1.04152 0.97471 1.18022 0.90618 0.92089 0.93246 1.20659 1.37255 0.97723 1.03187 0.90458 1.28494 1.02021 0.91137 0.99846 1.70591 1.16083 1.33228 1.24678 0.83015 0.72229 0.77251 0.74040 1.17813 1.19946 1.18770 1.20688 1.04692 1.04871 0.93630 1.20451 0.95416 0.97568 0.96966 1.21933 1.00977 0.89549 0.86286 0.87427 0.93909 0.92270 0.74845 0.90125 0.90529 0.89699 0.87559 0.88108 0.91866 0.89017 0.75113 0.84784 0.87097 0.91070 0.90089 0.88240 0.89713 0.92195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.00 10.70 127.77 1.37 2.37 16 2 N -0.72 -9.79 5.36 -484.54 -2.60 -12.39 16 3 C 0.52 9.80 6.30 87.65 0.55 10.35 16 4 O -0.57 -14.80 15.41 -3.04 -0.05 -14.84 16 5 C -0.09 -1.28 0.76 -51.74 -0.04 -1.32 16 6 C -0.13 -1.06 8.42 71.98 0.61 -0.45 16 7 C -0.10 -1.50 5.76 32.06 0.18 -1.32 16 8 C 0.09 1.82 6.29 86.93 0.55 2.37 16 9 N -0.63 -17.10 3.32 -829.33 -2.76 -19.86 16 10 C 0.71 26.55 8.23 179.05 1.47 28.02 16 11 O -0.62 -29.32 14.18 -3.96 -0.06 -29.37 16 12 N -0.66 -23.56 5.27 -316.78 -1.67 -25.22 16 13 C 0.03 1.14 6.33 38.57 0.24 1.39 16 14 C -0.09 -4.00 9.89 22.13 0.22 -3.79 16 15 C -0.22 -10.74 9.74 22.48 0.22 -10.52 16 16 C 0.06 3.52 5.19 -21.27 -0.11 3.41 16 17 C -0.56 -31.18 8.94 23.39 0.21 -30.97 16 18 H 0.08 4.12 7.97 -2.91 -0.02 4.10 16 19 C 0.00 0.01 4.88 85.24 0.42 0.42 16 20 N -0.82 -47.69 12.49 21.82 0.27 -47.41 16 21 Si 1.12 44.95 30.00 68.60 2.06 47.01 16 22 H -0.25 -9.22 7.11 99.48 0.71 -8.51 16 23 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 24 H -0.26 -9.97 7.11 99.48 0.71 -9.27 16 25 C -0.22 -12.31 8.00 22.48 0.18 -12.13 16 26 C -0.08 -4.33 8.58 22.14 0.19 -4.14 16 27 C 0.14 2.87 6.00 86.73 0.52 3.39 16 28 H 0.11 0.59 8.14 -2.39 -0.02 0.57 16 29 H 0.04 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.42 3.47 8.34 -92.71 -0.77 2.70 16 32 H 0.08 0.42 7.85 -2.39 -0.02 0.40 16 33 H 0.08 0.55 8.14 -2.39 -0.02 0.54 16 34 H 0.08 0.60 8.13 -2.38 -0.02 0.58 16 35 H 0.11 1.20 8.04 -2.39 -0.02 1.18 16 36 H 0.10 1.53 7.31 -2.38 -0.02 1.51 16 37 H 0.06 1.40 7.96 -2.39 -0.02 1.38 16 38 H 0.09 1.55 7.37 -2.39 -0.02 1.53 16 39 H 0.41 11.41 7.34 -92.71 -0.68 10.73 16 40 H 0.13 4.61 8.06 -2.91 -0.02 4.59 16 41 H 0.11 5.04 8.06 -2.91 -0.02 5.02 16 42 H 0.28 17.06 6.96 -92.70 -0.65 16.42 16 43 H 0.08 4.82 6.86 -2.91 -0.02 4.80 16 44 H 0.10 5.27 6.24 -2.91 -0.02 5.25 16 45 H 0.08 1.73 7.82 -2.38 -0.02 1.71 16 46 H 0.06 1.35 7.43 -2.39 -0.02 1.33 16 Total: -1.00 -78.99 375.65 1.67 -77.32 By element: Atomic # 1 Polarization: 38.02 SS G_CDS: -0.31 Total: 37.71 kcal Atomic # 6 Polarization: -19.71 SS G_CDS: 6.78 Total: -12.93 kcal Atomic # 7 Polarization: -98.13 SS G_CDS: -6.75 Total: -104.88 kcal Atomic # 8 Polarization: -44.12 SS G_CDS: -0.10 Total: -44.22 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.06 Total: 47.01 kcal Total: -78.99 1.67 -77.32 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280618983.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.319 kcal (2) G-P(sol) polarization free energy of solvation -78.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds