Wall clock time and date at job start Tue Mar 31 2020 17:19:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34777 * 119.99919 * 2 1 4 4 O 1.21280 * 120.00085 * 0.02562 * 3 2 1 5 5 C 1.50702 * 119.99459 * 180.02562 * 3 2 1 6 6 C 1.52999 * 110.88655 * 303.87718 * 5 3 2 7 7 C 1.55162 * 111.00106 * 180.02562 * 5 3 2 8 8 C 1.54326 * 102.93974 * 206.38704 * 7 5 3 9 9 N 1.47014 * 107.27255 * 22.18749 * 8 7 5 10 10 C 1.34776 * 125.64670 * 181.02168 * 9 8 7 11 11 O 1.21582 * 119.99924 * 180.02562 * 10 9 8 12 12 N 1.34775 * 120.00145 * 0.03017 * 10 9 8 13 13 C 1.39244 * 120.00097 * 185.14578 * 12 10 9 14 14 C 1.39481 * 119.83284 * 214.20129 * 13 12 10 15 15 C 1.36377 * 120.16744 * 179.71547 * 14 13 12 16 16 C 1.40864 * 119.82860 * 0.57902 * 15 14 13 17 17 C 1.41151 * 120.16713 * 179.67435 * 16 15 14 18 18 H 1.08003 * 120.00596 * 205.37939 * 17 16 15 19 19 C 1.39900 * 119.99893 * 25.38218 * 17 16 15 20 20 N 1.30880 * 119.99652 * 16.81615 * 19 17 16 21 21 Si 1.86800 * 119.99982 * 196.82417 * 19 17 16 22 22 H 1.48502 * 109.47314 * 59.99923 * 21 19 17 23 23 H 1.48504 * 109.47077 * 179.97438 * 21 19 17 24 24 H 1.48502 * 109.46956 * 299.99733 * 21 19 17 25 25 C 1.40869 * 119.67166 * 359.69590 * 16 15 14 26 26 C 1.36374 * 119.82913 * 359.97438 * 25 16 15 27 27 C 1.47423 * 108.70659 * 1.29313 * 9 8 7 28 28 H 1.09002 * 109.47144 * 300.00175 * 1 2 3 29 29 H 1.09006 * 109.46945 * 59.99903 * 1 2 3 30 30 H 1.09004 * 109.47304 * 180.02562 * 1 2 3 31 31 H 0.96997 * 120.00031 * 180.02562 * 2 1 3 32 32 H 1.09001 * 109.47203 * 296.12002 * 6 5 3 33 33 H 1.08996 * 109.46931 * 56.12093 * 6 5 3 34 34 H 1.09001 * 109.47150 * 176.12677 * 6 5 3 35 35 H 1.08999 * 110.72408 * 88.01533 * 7 5 3 36 36 H 1.09003 * 110.71748 * 324.74846 * 7 5 3 37 37 H 1.09000 * 109.87653 * 262.77261 * 8 7 5 38 38 H 1.09003 * 109.88063 * 141.61011 * 8 7 5 39 39 H 0.96996 * 119.99763 * 5.14914 * 12 10 9 40 40 H 1.07997 * 119.91835 * 359.97438 * 14 13 12 41 41 H 1.07995 * 120.08382 * 180.29004 * 15 14 13 42 42 H 0.97001 * 119.99247 * 180.02562 * 20 19 17 43 43 H 1.08003 * 120.09067 * 180.02562 * 25 16 15 44 44 H 1.07998 * 119.91853 * 179.97438 * 26 25 16 45 45 H 1.09000 * 110.36912 * 94.47962 * 27 9 8 46 46 H 1.08999 * 110.36580 * 216.80740 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5325 2.2175 0.0005 5 6 3.6459 1.1671 -0.0006 6 6 4.1918 0.3700 1.1858 7 6 4.2021 2.6156 0.0002 8 6 5.5835 2.4557 -0.6689 9 7 5.5434 1.2192 -1.4631 10 6 6.5641 0.7159 -2.1852 11 8 6.4170 -0.3187 -2.8066 12 7 7.7478 1.3595 -2.2184 13 6 8.7674 0.8995 -3.0476 14 6 10.0970 1.0163 -2.6427 15 6 11.1007 0.5628 -3.4469 16 6 10.7925 -0.0137 -4.6946 17 6 11.8261 -0.4792 -5.5357 18 1 11.6704 -0.5342 -6.6030 19 6 13.0523 -0.8695 -4.9866 20 7 13.1454 -1.1201 -3.7054 21 14 14.5565 -1.0326 -6.0821 22 1 14.8491 0.2764 -6.7194 23 1 15.7213 -1.4556 -5.2638 24 1 14.2950 -2.0478 -7.1340 25 6 9.4475 -0.1230 -5.0992 26 6 8.4543 0.3289 -4.2812 27 6 4.1998 0.6242 -1.3441 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.9500 -0.8400 -0.0004 32 1 3.8990 0.8567 2.1161 33 1 3.7860 -0.6413 1.1615 34 1 5.2792 0.3268 1.1250 35 1 4.3078 2.9877 1.0192 36 1 3.5628 3.2744 -0.5876 37 1 6.3585 2.3813 0.0940 38 1 5.7813 3.3078 -1.3193 39 1 7.8894 2.1431 -1.6646 40 1 10.3321 1.4633 -1.6881 41 1 12.1294 0.6497 -3.1300 42 1 13.9957 -1.3903 -3.3248 43 1 9.2035 -0.5643 -6.0542 44 1 7.4227 0.2462 -4.5901 45 1 3.5689 0.9430 -2.1738 46 1 4.2678 -0.4632 -1.3141 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000280618986.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:19:45 Heat of formation + Delta-G solvation = -37.731742 kcal Electronic energy + Delta-G solvation = -27857.106662 eV Core-core repulsion = 23939.472808 eV Total energy + Delta-G solvation = -3917.633854 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.96912 -39.71969 -38.01105 -36.88414 -35.01194 -34.42238 -33.28627 -32.49089 -29.90048 -29.54898 -28.88718 -27.29416 -26.99773 -24.95510 -23.57620 -22.19636 -21.45229 -20.72994 -19.90975 -19.39135 -18.22545 -17.33763 -17.13740 -16.42407 -16.22954 -15.73677 -15.53582 -15.18478 -14.83527 -14.53425 -14.23356 -13.94695 -13.89746 -13.41762 -13.09283 -12.95502 -12.73995 -12.72638 -12.66009 -12.62529 -12.28910 -12.07690 -11.81250 -11.78122 -11.30092 -11.27745 -11.09873 -11.08165 -11.01194 -10.72230 -10.15711 -10.04301 -9.56666 -9.52332 -9.50849 -9.16781 -8.90663 -8.58516 -7.51090 -6.93248 -6.70813 -4.26623 2.22468 2.63233 2.73455 2.97187 3.07611 3.10149 3.12858 3.18282 3.67675 3.91700 3.95086 4.15435 4.45544 4.46226 4.60308 4.66542 4.86564 4.88519 4.96937 5.12530 5.21905 5.37538 5.40171 5.45978 5.49867 5.55615 5.67449 5.72543 5.75960 5.87300 5.99758 6.14198 6.23789 6.45082 6.80759 6.90323 7.05913 7.06865 7.15145 7.29972 7.38403 7.64020 7.82826 7.89171 7.97436 8.07107 8.31330 8.45688 8.62930 8.91567 8.93430 9.11583 10.21064 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.034176 B = 0.002112 C = 0.002075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.102704 B =13251.496053 C =13493.457618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.733 5.733 3 C 0.533 3.467 4 O -0.534 6.534 5 C -0.100 4.100 6 C -0.133 4.133 7 C -0.105 4.105 8 C 0.099 3.901 9 N -0.639 5.639 10 C 0.714 3.286 11 O -0.574 6.574 12 N -0.662 5.662 13 C 0.012 3.988 14 C -0.115 4.115 15 C -0.152 4.152 16 C 0.104 3.896 17 C -0.459 4.459 18 H 0.077 0.923 19 C 0.074 3.926 20 N -0.795 5.795 21 Si 0.909 3.091 22 H -0.264 1.264 23 H -0.279 1.279 24 H -0.266 1.266 25 C -0.214 4.214 26 C -0.076 4.076 27 C 0.146 3.854 28 H 0.059 0.941 29 H 0.060 0.940 30 H 0.076 0.924 31 H 0.404 0.596 32 H 0.065 0.935 33 H 0.062 0.938 34 H 0.074 0.926 35 H 0.087 0.913 36 H 0.091 0.909 37 H 0.068 0.932 38 H 0.070 0.930 39 H 0.391 0.609 40 H 0.089 0.911 41 H 0.121 0.879 42 H 0.280 0.720 43 H 0.094 0.906 44 H 0.101 0.899 45 H 0.067 0.933 46 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.378 4.132 11.374 21.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.385 5.385 3 C 0.319 3.681 4 O -0.410 6.410 5 C -0.104 4.104 6 C -0.191 4.191 7 C -0.143 4.143 8 C -0.025 4.025 9 N -0.380 5.380 10 C 0.416 3.584 11 O -0.451 6.451 12 N -0.307 5.307 13 C -0.080 4.080 14 C -0.135 4.135 15 C -0.172 4.172 16 C 0.101 3.899 17 C -0.488 4.488 18 H 0.095 0.905 19 C -0.143 4.143 20 N -0.420 5.420 21 Si 0.734 3.266 22 H -0.189 1.189 23 H -0.204 1.204 24 H -0.190 1.190 25 C -0.234 4.234 26 C -0.096 4.096 27 C 0.022 3.978 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.095 0.905 31 H 0.238 0.762 32 H 0.084 0.916 33 H 0.081 0.919 34 H 0.093 0.907 35 H 0.105 0.895 36 H 0.109 0.891 37 H 0.086 0.914 38 H 0.088 0.912 39 H 0.224 0.776 40 H 0.107 0.893 41 H 0.139 0.861 42 H 0.091 0.909 43 H 0.113 0.887 44 H 0.119 0.881 45 H 0.085 0.915 46 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -17.709 4.006 11.031 21.244 hybrid contribution 0.942 -0.217 -0.017 0.967 sum -16.766 3.789 11.013 20.415 Atomic orbital electron populations 1.21564 0.79410 1.02393 1.02386 1.45826 1.07894 1.08877 1.75868 1.20177 0.89059 0.83621 0.75281 1.90705 1.70035 1.31298 1.48956 1.22061 0.91467 0.99045 0.97856 1.21742 1.02570 0.99110 0.95651 1.22574 0.94953 0.94369 1.02385 1.22027 0.98025 0.87667 0.94756 1.47474 1.11638 1.26360 1.52533 1.15497 0.79887 0.83067 0.79911 1.90932 1.82054 1.23914 1.48170 1.42101 1.11718 1.31065 1.45844 1.16960 0.85730 1.13242 0.92109 1.20187 0.91461 1.03323 0.98544 1.20876 0.98034 1.01840 0.96446 1.17648 0.91473 0.88569 0.92172 1.19509 0.96315 1.37857 0.95138 0.90453 1.25917 1.00348 0.92773 0.95301 1.69844 1.26960 1.32330 1.12878 0.86357 0.79962 0.79727 0.80595 1.18858 1.20405 1.19030 1.20647 0.92691 1.09339 1.00745 1.20245 0.98142 0.99008 0.92255 1.21905 0.82853 0.99097 0.93957 0.92187 0.92093 0.90516 0.76162 0.91628 0.91898 0.90695 0.89454 0.89054 0.91417 0.91202 0.77580 0.89263 0.86082 0.90877 0.88736 0.88103 0.91514 0.89713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.50 10.70 59.85 0.64 1.14 16 2 N -0.73 -5.13 5.60 -67.07 -0.38 -5.51 16 3 C 0.53 5.19 6.57 -10.98 -0.07 5.12 16 4 O -0.53 -7.03 15.71 5.56 0.09 -6.94 16 5 C -0.10 -0.89 0.80 -153.39 -0.12 -1.01 16 6 C -0.13 -0.97 8.49 37.16 0.32 -0.66 16 7 C -0.10 -0.91 5.58 -24.89 -0.14 -1.05 16 8 C 0.10 0.96 5.84 -3.07 -0.02 0.95 16 9 N -0.64 -8.58 3.31 -176.10 -0.58 -9.16 16 10 C 0.71 13.13 8.21 -86.92 -0.71 12.41 16 11 O -0.57 -13.01 14.32 5.29 0.08 -12.93 16 12 N -0.66 -12.10 5.26 -14.10 -0.07 -12.17 16 13 C 0.01 0.28 6.27 -83.57 -0.52 -0.25 16 14 C -0.11 -2.64 9.89 -39.79 -0.39 -3.04 16 15 C -0.15 -3.92 8.63 -39.26 -0.34 -4.26 16 16 C 0.10 2.81 5.57 -106.80 -0.59 2.22 16 17 C -0.46 -12.25 9.04 -37.85 -0.34 -12.59 16 18 H 0.08 1.98 7.90 -52.48 -0.41 1.57 16 19 C 0.07 1.86 5.15 -17.34 -0.09 1.77 16 20 N -0.79 -20.58 10.95 55.55 0.61 -19.97 16 21 Si 0.91 18.69 29.59 -169.99 -5.03 13.66 16 22 H -0.26 -5.36 7.11 56.52 0.40 -4.96 16 23 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 24 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 25 C -0.21 -5.52 9.74 -39.26 -0.38 -5.90 16 26 C -0.08 -1.87 8.57 -39.79 -0.34 -2.21 16 27 C 0.15 1.65 5.84 -2.41 -0.01 1.64 16 28 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.40 1.98 8.06 -40.82 -0.33 1.65 16 32 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.06 0.38 7.37 -51.93 -0.38 -0.01 16 34 H 0.07 0.64 7.91 -51.93 -0.41 0.23 16 35 H 0.09 0.63 8.04 -51.93 -0.42 0.22 16 36 H 0.09 0.90 7.39 -51.93 -0.38 0.52 16 37 H 0.07 0.58 8.12 -51.93 -0.42 0.16 16 38 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.39 5.74 7.80 -40.82 -0.32 5.42 16 40 H 0.09 1.79 8.06 -52.49 -0.42 1.37 16 41 H 0.12 3.19 6.18 -52.49 -0.32 2.86 16 42 H 0.28 6.61 8.30 -40.82 -0.34 6.27 16 43 H 0.09 2.32 8.06 -52.48 -0.42 1.89 16 44 H 0.10 2.46 6.47 -52.49 -0.34 2.12 16 45 H 0.07 0.79 8.04 -51.93 -0.42 0.37 16 46 H 0.08 0.98 7.95 -51.93 -0.41 0.56 16 LS Contribution 377.30 15.07 5.69 5.69 Total: -1.00 -33.61 377.30 -9.40 -43.01 By element: Atomic # 1 Polarization: 16.71 SS G_CDS: -6.67 Total: 10.04 kcal Atomic # 6 Polarization: -2.59 SS G_CDS: -3.13 Total: -5.72 kcal Atomic # 7 Polarization: -46.39 SS G_CDS: -0.42 Total: -46.81 kcal Atomic # 8 Polarization: -20.04 SS G_CDS: 0.16 Total: -19.87 kcal Atomic # 14 Polarization: 18.69 SS G_CDS: -5.03 Total: 13.66 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -33.61 -9.40 -43.01 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280618986.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.279 kcal (2) G-P(sol) polarization free energy of solvation -33.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds