Wall clock time and date at job start Tue Mar 31 2020 17:23:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.29822 * 118.55834 * 2 1 4 4 C 1.50141 * 123.28945 * 180.37452 * 3 2 1 5 5 N 1.46848 * 110.26950 * 342.95231 * 4 3 2 6 6 C 1.46906 * 110.99897 * 287.53448 * 5 4 3 7 7 C 1.53001 * 109.47194 * 293.95426 * 6 5 4 8 8 N 1.46498 * 109.47077 * 180.02562 * 7 6 5 9 9 S 1.65595 * 120.00063 * 165.00440 * 8 7 6 10 10 O 1.42095 * 106.40282 * 178.53695 * 9 8 7 11 11 O 1.42100 * 106.40181 * 311.45901 * 9 8 7 12 12 N 1.65601 * 107.21794 * 64.99696 * 9 8 7 13 13 C 1.46492 * 120.00121 * 269.99740 * 12 9 8 14 14 C 1.46507 * 119.99968 * 90.00300 * 12 9 8 15 15 H 1.09000 * 109.46948 * 359.97438 * 14 12 9 16 16 C 1.52999 * 109.47033 * 240.00031 * 14 12 9 17 17 C 1.50698 * 109.46902 * 119.99714 * 14 12 9 18 18 H 1.07996 * 120.00446 * 0.02562 * 17 14 12 19 19 C 1.37885 * 119.99667 * 179.97438 * 17 14 12 20 20 N 1.31514 * 119.99590 * 0.02562 * 19 17 14 21 21 Si 1.86800 * 119.99985 * 180.02562 * 19 17 14 22 22 H 1.48494 * 109.47136 * 89.99905 * 21 19 17 23 23 H 1.48496 * 109.46946 * 209.99886 * 21 19 17 24 24 H 1.48497 * 109.47220 * 329.99874 * 21 19 17 25 25 C 1.47229 * 110.21944 * 50.91442 * 5 4 3 26 26 C 1.50306 * 118.55068 * 179.97438 * 2 1 3 27 27 H 1.09001 * 109.46729 * 270.02122 * 1 2 3 28 28 H 1.08995 * 109.47157 * 30.01379 * 1 2 3 29 29 H 1.08994 * 109.47275 * 150.02224 * 1 2 3 30 30 H 1.07998 * 118.35227 * 0.40083 * 3 2 1 31 31 H 1.08997 * 109.33411 * 103.19329 * 4 3 2 32 32 H 1.09001 * 109.33888 * 222.87234 * 4 3 2 33 33 H 1.08996 * 109.47109 * 53.95646 * 6 5 4 34 34 H 1.09007 * 109.46805 * 173.96012 * 6 5 4 35 35 H 1.09004 * 109.47446 * 300.00351 * 7 6 5 36 36 H 1.08997 * 109.46752 * 60.00413 * 7 6 5 37 37 H 0.97002 * 119.99998 * 345.00048 * 8 7 6 38 38 H 1.09001 * 109.47088 * 90.00296 * 13 12 9 39 39 H 1.09004 * 109.47810 * 210.00159 * 13 12 9 40 40 H 1.08998 * 109.47724 * 330.00712 * 13 12 9 41 41 H 1.09008 * 109.46681 * 299.99644 * 16 14 12 42 42 H 1.08993 * 109.47142 * 59.99446 * 16 14 12 43 43 H 1.09002 * 109.46927 * 180.02562 * 16 14 12 44 44 H 0.97008 * 119.99309 * 179.97438 * 20 19 17 45 45 H 1.09004 * 109.63075 * 171.51137 * 25 5 4 46 46 H 1.09001 * 109.63801 * 50.89967 * 25 5 4 47 47 H 1.09004 * 109.43300 * 283.57594 * 26 2 1 48 48 H 1.08997 * 109.43380 * 43.42211 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1276 1.1403 0.0000 4 6 3.6239 1.2641 -0.0082 5 7 4.2418 -0.0077 0.3881 6 6 4.0641 -0.2540 1.8255 7 6 4.8439 0.7936 2.6226 8 7 4.6672 0.5477 4.0559 9 16 5.6733 1.2759 5.1512 10 8 5.2276 0.8693 6.4377 11 8 6.9980 1.0611 4.6839 12 7 5.4028 2.9069 5.0565 13 6 6.1818 3.7257 4.1244 14 6 4.3844 3.5310 5.9049 15 1 3.9130 2.7697 6.5265 16 6 3.3254 4.1972 5.0243 17 6 5.0314 4.5690 6.7852 18 1 6.0946 4.7465 6.7190 19 6 4.2656 5.2930 7.6744 20 7 2.9708 5.0772 7.7546 21 14 5.0674 6.5803 8.7651 22 1 5.0570 7.8930 8.0711 23 1 4.3132 6.6882 10.0397 24 1 6.4692 6.1828 9.0515 25 6 3.6860 -1.1137 -0.4090 26 6 2.2254 -1.3203 0.0006 27 1 -0.3633 0.0004 1.0277 28 1 -0.3633 0.8898 -0.5140 29 1 -0.3633 -0.8901 -0.5135 30 1 1.5380 2.0451 0.0066 31 1 3.9584 1.5309 -1.0107 32 1 3.9255 2.0429 0.6923 33 1 3.0057 -0.1883 2.0772 34 1 4.4354 -1.2487 2.0722 35 1 5.9025 0.7280 2.3708 36 1 4.4727 1.7883 2.3758 37 1 3.9608 -0.0417 4.3634 38 1 5.6693 3.7693 3.1634 39 1 6.2867 4.7335 4.5262 40 1 7.1689 3.2836 3.9898 41 1 3.7966 4.9585 4.4025 42 1 2.8576 3.4464 4.3876 43 1 2.5680 4.6620 5.6556 44 1 2.4321 5.5863 8.3804 45 1 4.2527 -2.0247 -0.2166 46 1 3.7376 -0.8636 -1.4687 47 1 2.1868 -1.7537 1.0000 48 1 1.7429 -1.9960 -0.7056 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337795050.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:23:15 Heat of formation + Delta-G solvation = -55.575163 kcal Electronic energy + Delta-G solvation = -27987.444647 eV Core-core repulsion = 24204.480996 eV Total energy + Delta-G solvation = -3782.963651 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.172 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.05057 -36.66026 -36.15385 -35.68559 -35.19412 -33.85265 -32.56343 -31.22336 -29.26146 -29.08207 -26.92746 -25.48095 -25.15929 -24.20219 -23.30254 -21.44141 -20.76517 -18.84342 -17.71364 -17.11265 -16.77215 -16.61614 -16.11513 -15.96721 -15.27666 -15.19386 -14.84453 -14.49551 -14.29627 -14.05976 -13.68011 -13.42070 -13.16749 -12.90038 -12.80007 -12.59047 -12.18308 -12.15411 -12.04674 -11.99289 -11.83613 -11.79139 -11.48323 -11.32512 -11.27302 -11.20279 -11.09653 -10.90492 -10.88456 -10.80105 -10.44343 -10.22060 -10.04500 -9.29764 -9.22745 -8.96823 -8.54669 -8.44986 -7.95959 -6.06900 -4.13232 1.24720 1.93325 3.28739 3.35807 3.38927 3.42540 3.83164 4.17105 4.40916 4.44435 4.60087 4.70695 4.82035 4.88229 5.01366 5.08015 5.23621 5.24974 5.25987 5.30010 5.39912 5.45260 5.47225 5.53488 5.58616 5.65342 5.68397 5.75490 5.81794 5.90379 6.08256 6.13644 6.31081 6.38435 6.65657 6.67892 6.76348 6.79231 6.84704 6.87406 7.04447 7.17759 7.50765 7.64056 7.80185 8.05736 8.28453 8.88857 9.52352 10.98797 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.016290 B = 0.003362 C = 0.003046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1718.441365 B = 8325.660999 C = 9191.685294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.128 4.128 3 C -0.189 4.189 4 C 0.073 3.927 5 N -0.525 5.525 6 C 0.044 3.956 7 C 0.125 3.875 8 N -1.133 6.133 9 S 2.782 3.218 10 O -0.975 6.975 11 O -0.996 6.996 12 N -0.988 5.988 13 C 0.096 3.904 14 C 0.268 3.732 15 H 0.058 0.942 16 C -0.145 4.145 17 C -0.520 4.520 18 H 0.063 0.937 19 C 0.063 3.937 20 N -0.890 5.890 21 Si 0.898 3.102 22 H -0.281 1.281 23 H -0.286 1.286 24 H -0.273 1.273 25 C 0.054 3.946 26 C -0.122 4.122 27 H 0.066 0.934 28 H 0.062 0.938 29 H 0.060 0.940 30 H 0.109 0.891 31 H 0.089 0.911 32 H 0.091 0.909 33 H 0.049 0.951 34 H 0.080 0.920 35 H 0.083 0.917 36 H 0.063 0.937 37 H 0.410 0.590 38 H 0.036 0.964 39 H 0.083 0.917 40 H 0.063 0.937 41 H 0.032 0.968 42 H 0.009 0.991 43 H 0.091 0.909 44 H 0.263 0.737 45 H 0.081 0.919 46 H 0.078 0.922 47 H 0.076 0.924 48 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.141 -10.063 -18.072 20.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.129 4.129 3 C -0.209 4.209 4 C -0.055 4.055 5 N -0.248 5.248 6 C -0.085 4.085 7 C -0.002 4.002 8 N -0.892 5.892 9 S 2.790 3.210 10 O -0.959 6.959 11 O -0.979 6.979 12 N -0.831 5.831 13 C -0.051 4.051 14 C 0.165 3.835 15 H 0.076 0.924 16 C -0.205 4.205 17 C -0.560 4.560 18 H 0.081 0.919 19 C -0.139 4.139 20 N -0.529 5.529 21 Si 0.726 3.274 22 H -0.207 1.207 23 H -0.211 1.211 24 H -0.198 1.198 25 C -0.074 4.074 26 C -0.160 4.160 27 H 0.084 0.916 28 H 0.081 0.919 29 H 0.079 0.921 30 H 0.127 0.873 31 H 0.107 0.893 32 H 0.109 0.891 33 H 0.067 0.933 34 H 0.099 0.901 35 H 0.102 0.898 36 H 0.081 0.919 37 H 0.242 0.758 38 H 0.054 0.946 39 H 0.101 0.899 40 H 0.081 0.919 41 H 0.051 0.949 42 H 0.028 0.972 43 H 0.110 0.890 44 H 0.073 0.927 45 H 0.099 0.901 46 H 0.097 0.903 47 H 0.094 0.906 48 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -1.983 -10.296 -17.558 20.451 hybrid contribution -1.378 0.726 0.633 1.681 sum -3.361 -9.570 -16.925 19.732 Atomic orbital electron populations 1.20901 0.92336 1.02186 1.02147 1.20942 0.95883 0.94727 1.01320 1.22766 0.97897 0.97855 1.02347 1.21235 0.89263 0.92622 1.02350 1.62648 1.55657 1.02610 1.03858 1.22310 0.99223 0.99636 0.87341 1.21129 1.01378 0.98329 0.79354 1.56172 1.51818 1.63721 1.17507 1.01860 0.73232 0.73189 0.72702 1.93613 1.82424 1.82180 1.37694 1.93526 1.36372 1.85505 1.82528 1.57643 1.50376 1.23823 1.51275 1.21320 0.94098 0.98264 0.91393 1.18716 0.84029 0.93758 0.86955 0.92428 1.22098 1.00805 0.98761 0.98822 1.21344 0.94861 1.19742 1.20030 0.91878 1.24910 0.94877 0.97224 0.96882 1.69866 1.04860 1.41301 1.36863 0.86492 0.79534 0.81439 0.79922 1.20674 1.21146 1.19809 1.22273 0.92216 0.94739 0.98216 1.21084 0.96993 0.95397 1.02564 0.91554 0.91932 0.92119 0.87313 0.89344 0.89083 0.93306 0.90132 0.89843 0.91893 0.75778 0.94581 0.89860 0.91854 0.94880 0.97208 0.89019 0.92736 0.90073 0.90303 0.90599 0.90599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.94 9.91 36.01 0.36 -0.58 16 2 C -0.13 -1.15 5.25 -100.93 -0.53 -1.68 16 3 C -0.19 -1.80 8.95 -35.97 -0.32 -2.12 16 4 C 0.07 0.69 5.84 -5.27 -0.03 0.66 16 5 N -0.53 -5.15 5.03 -236.11 -1.19 -6.34 16 6 C 0.04 0.47 4.20 -3.82 -0.02 0.45 16 7 C 0.13 1.60 6.20 -4.04 -0.03 1.57 16 8 N -1.13 -16.76 6.05 -10.61 -0.06 -16.82 16 9 S 2.78 54.58 6.14 -107.50 -0.66 53.92 16 10 O -0.98 -22.80 16.70 -57.17 -0.95 -23.76 16 11 O -1.00 -20.76 16.21 -57.17 -0.93 -21.68 16 12 N -0.99 -20.40 3.12 -115.85 -0.36 -20.76 16 13 C 0.10 1.69 9.65 59.84 0.58 2.27 16 14 C 0.27 6.55 2.62 -69.08 -0.18 6.37 16 15 H 0.06 1.56 6.91 -51.93 -0.36 1.21 16 16 C -0.15 -3.28 8.97 37.16 0.33 -2.94 16 17 C -0.52 -13.97 7.99 -34.44 -0.28 -14.25 16 18 H 0.06 1.68 7.33 -52.49 -0.38 1.30 16 19 C 0.06 1.72 5.30 -17.82 -0.09 1.62 16 20 N -0.89 -24.74 11.32 55.43 0.63 -24.11 16 21 Si 0.90 21.11 29.54 -169.99 -5.02 16.09 16 22 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 23 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 24 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 25 C 0.05 0.43 6.03 -3.60 -0.02 0.41 16 26 C -0.12 -0.96 5.23 -28.03 -0.15 -1.10 16 27 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.06 0.47 7.94 -51.93 -0.41 0.06 16 29 H 0.06 0.41 8.08 -51.93 -0.42 -0.01 16 30 H 0.11 1.01 7.87 -52.49 -0.41 0.60 16 31 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.09 0.90 6.00 -51.93 -0.31 0.59 16 33 H 0.05 0.53 6.00 -51.93 -0.31 0.22 16 34 H 0.08 0.81 8.09 -51.93 -0.42 0.39 16 35 H 0.08 1.12 7.75 -51.93 -0.40 0.71 16 36 H 0.06 0.79 6.32 -51.93 -0.33 0.46 16 37 H 0.41 5.33 8.65 -34.47 -0.30 5.03 16 38 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 39 H 0.08 1.54 7.02 -51.93 -0.36 1.18 16 40 H 0.06 1.06 7.02 -51.93 -0.36 0.69 16 41 H 0.03 0.70 7.67 -51.92 -0.40 0.30 16 42 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 43 H 0.09 2.30 6.07 -51.93 -0.32 1.99 16 44 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 45 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 46 H 0.08 0.59 8.08 -51.93 -0.42 0.17 16 47 H 0.08 0.62 7.13 -51.93 -0.37 0.25 16 48 H 0.08 0.50 8.13 -51.93 -0.42 0.08 16 LS Contribution 382.68 15.07 5.77 5.77 Total: -1.00 -31.98 382.68 -11.12 -43.10 By element: Atomic # 1 Polarization: 11.90 SS G_CDS: -7.96 Total: 3.94 kcal Atomic # 6 Polarization: -8.96 SS G_CDS: -0.37 Total: -9.33 kcal Atomic # 7 Polarization: -67.05 SS G_CDS: -0.99 Total: -68.04 kcal Atomic # 8 Polarization: -43.56 SS G_CDS: -1.88 Total: -45.44 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Atomic # 16 Polarization: 54.58 SS G_CDS: -0.66 Total: 53.92 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -31.98 -11.12 -43.10 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337795050.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.477 kcal (2) G-P(sol) polarization free energy of solvation -31.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds